Wall clock time and date at job start Tue Mar 31 2020 22:28:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.39322 * 119.11635 * 2 1 4 4 C 1.36575 * 119.90591 * 180.02562 * 3 2 1 5 5 C 1.40886 * 118.16160 * 359.97438 * 4 3 2 6 6 C 1.40179 * 121.22766 * 180.27743 * 5 4 3 7 7 C 1.38558 * 119.40306 * 180.23746 * 6 5 4 8 8 C 1.47761 * 119.80515 * 179.75187 * 7 6 5 9 9 O 1.21566 * 120.00392 * 335.08721 * 8 7 6 10 10 N 1.34780 * 120.00057 * 154.80489 * 8 7 6 11 11 C 1.46498 * 119.99466 * 355.02172 * 10 8 7 12 12 C 1.46499 * 120.00090 * 175.01577 * 10 8 7 13 13 H 1.09001 * 110.63952 * 358.31595 * 12 10 8 14 14 C 1.55159 * 110.71980 * 234.97695 * 12 10 8 15 15 C 1.54903 * 101.58355 * 277.14257 * 14 12 10 16 16 N 1.47425 * 104.83461 * 322.98826 * 15 14 12 17 17 C 1.36932 * 125.65132 * 204.09567 * 16 15 14 18 18 H 1.08001 * 120.00233 * 180.02562 * 17 16 15 19 19 C 1.38810 * 120.00099 * 0.04250 * 17 16 15 20 20 N 1.31624 * 119.99735 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 120.00139 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.47035 * 89.99575 * 21 19 17 23 23 H 1.48500 * 109.47174 * 209.99743 * 21 19 17 24 24 H 1.48502 * 109.47169 * 329.99951 * 21 19 17 25 25 C 1.47029 * 108.69967 * 24.13306 * 16 15 14 26 26 C 1.40629 * 120.38991 * 359.47938 * 7 6 5 27 27 C 1.35703 * 120.91805 * 0.27584 * 26 7 6 28 28 C 1.40756 * 120.11585 * 359.97438 * 27 26 7 29 29 N 1.31116 * 119.11833 * 179.97438 * 2 1 3 30 30 H 1.08994 * 109.47258 * 90.00342 * 1 2 3 31 31 H 1.09000 * 109.46772 * 210.00477 * 1 2 3 32 32 H 1.09004 * 109.47282 * 330.00419 * 1 2 3 33 33 H 1.08001 * 120.04398 * 359.97438 * 3 2 1 34 34 H 1.08005 * 120.91514 * 179.97438 * 4 3 2 35 35 H 1.08000 * 120.30095 * 359.97438 * 6 5 4 36 36 H 1.09001 * 109.47319 * 95.86163 * 11 10 8 37 37 H 1.09005 * 109.46882 * 215.85397 * 11 10 8 38 38 H 1.08998 * 109.47515 * 335.85439 * 11 10 8 39 39 H 1.09005 * 111.00424 * 35.21809 * 14 12 10 40 40 H 1.08995 * 111.00134 * 159.06415 * 14 12 10 41 41 H 1.09006 * 110.36471 * 204.15218 * 15 14 12 42 42 H 1.09002 * 110.46042 * 81.88024 * 15 14 12 43 43 H 0.97004 * 119.99198 * 179.97438 * 20 19 17 44 44 H 1.09007 * 109.87916 * 239.52630 * 25 16 15 45 45 H 1.08993 * 109.88670 * 118.35892 * 25 16 15 46 46 H 1.07998 * 119.54346 * 180.29406 * 26 7 6 47 47 H 1.07998 * 119.93869 * 180.02562 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1849 1.2172 0.0000 4 6 3.5505 1.2360 -0.0005 5 6 4.2325 0.0032 -0.0005 6 6 5.6332 -0.0525 0.0048 7 6 6.2650 -1.2856 -0.0004 8 6 7.7410 -1.3547 -0.0005 9 8 8.3929 -0.4274 -0.4399 10 7 8.3647 -2.4433 0.4919 11 6 7.5856 -3.5097 1.1259 12 6 9.8217 -2.5602 0.3929 13 1 10.2415 -1.7005 -0.1294 14 6 10.2196 -3.8838 -0.3121 15 6 10.1515 -4.8935 0.8607 16 7 10.6517 -4.1481 2.0301 17 6 11.2079 -4.7025 3.1518 18 1 11.5449 -4.0676 3.9578 19 6 11.3388 -6.0807 3.2529 20 7 10.9279 -6.8546 2.2706 21 14 12.0969 -6.8372 4.7834 22 1 11.0303 -7.1148 5.7786 23 1 12.7795 -8.1057 4.4225 24 1 13.0836 -5.8924 5.3658 25 6 10.4536 -2.7106 1.7928 26 6 5.5097 -2.4719 0.0002 27 6 4.1532 -2.4349 0.0002 28 6 3.4805 -1.1985 0.0001 29 7 2.1450 -1.1455 0.0005 30 1 -0.3633 -0.0001 -1.0276 31 1 -0.3633 -0.8900 0.5139 32 1 -0.3634 0.8900 0.5138 33 1 1.6313 2.1445 -0.0004 34 1 4.0926 2.1701 -0.0010 35 1 6.2147 0.8576 0.0085 36 1 7.3819 -4.2937 0.3965 37 1 8.1514 -3.9268 1.9590 38 1 6.6440 -3.1022 1.4939 39 1 9.5030 -4.1419 -1.0919 40 1 11.2298 -3.8225 -0.7167 41 1 10.7894 -5.7539 0.6581 42 1 9.1234 -5.2153 1.0272 43 1 11.0199 -7.8177 2.3412 44 1 11.4131 -2.1942 1.8237 45 1 9.7841 -2.2990 2.5479 46 1 6.0163 -3.4257 0.0009 47 1 3.5889 -3.3557 0.0010 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033519308.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:28:46 Heat of formation + Delta-G solvation = 57.681460 kcal Electronic energy + Delta-G solvation = -28924.164460 eV Core-core repulsion = 25072.897944 eV Total energy + Delta-G solvation = -3851.266516 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.16113 -41.22001 -39.19560 -38.00791 -36.15022 -34.58313 -34.13039 -32.90763 -31.19831 -31.10304 -29.84411 -28.80623 -27.83340 -26.35362 -24.79021 -24.52267 -23.11498 -22.14969 -22.02890 -20.38071 -19.60756 -18.94925 -18.39574 -17.85042 -17.25088 -16.69436 -16.67198 -16.44746 -15.78249 -15.65247 -15.57671 -15.53515 -14.92130 -14.83509 -14.50921 -14.20827 -13.95952 -13.87461 -13.79990 -13.56210 -13.34613 -13.27111 -13.10138 -12.97392 -12.94681 -12.78731 -12.49732 -12.30753 -12.16055 -12.02578 -11.91442 -11.80608 -11.58182 -11.42190 -10.94614 -10.68100 -10.52063 -9.78976 -9.68910 -9.30775 -8.86541 -7.75748 -5.19432 -0.81752 -0.36083 0.84544 1.35031 1.48632 1.49102 1.57857 1.83607 2.14589 2.50384 3.01299 3.14527 3.33914 3.34633 3.53876 3.65613 3.70369 3.84188 3.86437 3.95215 3.99345 4.00429 4.15037 4.25727 4.34468 4.40347 4.52509 4.62328 4.66605 4.68706 4.79884 4.81633 4.85306 4.87018 4.88892 4.93958 4.98903 5.02973 5.09457 5.19213 5.20242 5.23223 5.44445 5.50055 5.55359 5.67391 5.75306 5.84023 6.31375 6.33572 6.89947 6.98378 7.13182 7.78417 8.42126 9.25279 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.020060 B = 0.002422 C = 0.002289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1395.465917 B =11557.827840 C =12228.297326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.159 3.841 3 C -0.172 4.172 4 C -0.047 4.047 5 C -0.135 4.135 6 C -0.024 4.024 7 C -0.147 4.147 8 C 0.558 3.442 9 O -0.576 6.576 10 N -0.587 5.587 11 C 0.067 3.933 12 C 0.137 3.863 13 H 0.105 0.895 14 C -0.139 4.139 15 C 0.150 3.850 16 N -0.618 5.618 17 C -0.237 4.237 18 H 0.075 0.925 19 C -0.060 4.060 20 N -0.943 5.943 21 Si 0.976 3.024 22 H -0.287 1.287 23 H -0.294 1.294 24 H -0.274 1.274 25 C 0.128 3.872 26 C -0.087 4.087 27 C -0.108 4.108 28 C 0.132 3.868 29 N -0.511 5.511 30 H 0.094 0.906 31 H 0.073 0.927 32 H 0.104 0.896 33 H 0.177 0.823 34 H 0.169 0.831 35 H 0.146 0.854 36 H 0.077 0.923 37 H 0.064 0.936 38 H 0.096 0.904 39 H 0.083 0.917 40 H 0.076 0.924 41 H 0.071 0.929 42 H 0.017 0.983 43 H 0.247 0.753 44 H 0.033 0.967 45 H 0.022 0.978 46 H 0.163 0.837 47 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.977 15.104 -6.640 26.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.007 3.993 3 C -0.192 4.192 4 C -0.072 4.072 5 C -0.138 4.138 6 C -0.044 4.044 7 C -0.150 4.150 8 C 0.349 3.651 9 O -0.457 6.457 10 N -0.317 5.317 11 C -0.075 4.075 12 C 0.034 3.966 13 H 0.123 0.877 14 C -0.179 4.179 15 C 0.026 3.974 16 N -0.345 5.345 17 C -0.366 4.366 18 H 0.093 0.907 19 C -0.253 4.253 20 N -0.592 5.592 21 Si 0.805 3.195 22 H -0.214 1.214 23 H -0.220 1.220 24 H -0.199 1.199 25 C 0.002 3.998 26 C -0.107 4.107 27 C -0.126 4.126 28 C 0.010 3.990 29 N -0.221 5.221 30 H 0.112 0.888 31 H 0.092 0.908 32 H 0.123 0.877 33 H 0.194 0.806 34 H 0.186 0.814 35 H 0.164 0.836 36 H 0.096 0.904 37 H 0.083 0.917 38 H 0.115 0.885 39 H 0.101 0.899 40 H 0.094 0.906 41 H 0.089 0.911 42 H 0.035 0.965 43 H 0.057 0.943 44 H 0.051 0.949 45 H 0.040 0.960 46 H 0.180 0.820 47 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -20.942 14.519 -6.759 26.364 hybrid contribution 1.328 -0.101 0.913 1.615 sum -19.614 14.418 -5.846 25.035 Atomic orbital electron populations 1.20927 0.86160 1.04828 1.04428 1.22293 0.98945 0.88229 0.89876 1.22136 0.94740 1.00283 1.02005 1.21929 0.95247 0.97279 0.92792 1.18947 0.93934 0.95436 1.05439 1.21491 0.92862 0.97526 0.92485 1.19797 0.91814 0.95346 1.08078 1.18613 0.87996 0.81397 0.77117 1.90716 1.67849 1.37686 1.49471 1.47679 1.07074 1.19918 1.57063 1.22609 0.96540 0.89948 0.98396 1.21946 0.79274 0.99411 0.96017 0.87739 1.23213 1.01627 0.94783 0.98233 1.21919 0.97408 0.94242 0.83825 1.44733 1.71355 1.00719 1.17698 1.19352 1.31999 0.90605 0.94625 0.90672 1.25510 1.02372 0.96362 1.01041 1.70024 1.53474 1.03205 1.32546 0.85117 0.77931 0.77541 0.78938 1.21409 1.21997 1.19945 1.21684 0.97143 0.86340 0.94629 1.21808 0.94029 0.98935 0.95884 1.20861 0.93623 0.97093 1.01043 1.19241 0.89697 0.93511 0.96501 1.67957 1.08140 1.30330 1.15675 0.88773 0.90831 0.87701 0.80554 0.81351 0.83592 0.90444 0.91716 0.88547 0.89863 0.90573 0.91096 0.96485 0.94280 0.94915 0.96006 0.81995 0.83025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.92 10.14 71.24 0.72 -0.20 16 2 C 0.16 2.55 6.78 42.93 0.29 2.85 16 3 C -0.17 -2.11 9.64 22.14 0.21 -1.90 16 4 C -0.05 -0.72 9.89 22.53 0.22 -0.49 16 5 C -0.14 -2.98 5.74 -21.29 -0.12 -3.10 16 6 C -0.02 -0.58 9.34 22.82 0.21 -0.37 16 7 C -0.15 -3.99 5.49 -20.10 -0.11 -4.10 16 8 C 0.56 18.22 7.48 86.76 0.65 18.87 16 9 O -0.58 -21.83 15.96 -3.92 -0.06 -21.89 16 10 N -0.59 -19.33 2.82 -819.44 -2.31 -21.64 16 11 C 0.07 2.01 6.69 127.77 0.85 2.86 16 12 C 0.14 5.01 3.58 46.18 0.17 5.17 16 13 H 0.10 3.79 7.01 -2.39 -0.02 3.78 16 14 C -0.14 -5.14 6.53 31.98 0.21 -4.93 16 15 C 0.15 6.96 5.02 86.85 0.44 7.40 16 16 N -0.62 -30.80 2.99 -691.98 -2.07 -32.87 16 17 C -0.24 -12.99 10.27 84.03 0.86 -12.13 16 18 H 0.08 4.03 7.83 -2.91 -0.02 4.00 16 19 C -0.06 -3.30 5.49 84.86 0.47 -2.83 16 20 N -0.94 -54.00 10.09 21.65 0.22 -53.78 16 21 Si 0.98 44.92 29.55 68.60 2.03 46.95 16 22 H -0.29 -13.03 7.11 99.48 0.71 -12.32 16 23 H -0.29 -13.56 7.11 99.48 0.71 -12.86 16 24 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 25 C 0.13 5.42 6.20 86.73 0.54 5.96 16 26 C -0.09 -2.05 7.41 22.27 0.16 -1.88 16 27 C -0.11 -2.45 9.95 22.30 0.22 -2.23 16 28 C 0.13 3.17 6.61 40.35 0.27 3.44 16 29 N -0.51 -11.57 10.23 -176.58 -1.81 -13.38 16 30 H 0.09 0.62 8.14 -2.39 -0.02 0.60 16 31 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 32 H 0.10 0.34 8.07 -2.39 -0.02 0.32 16 33 H 0.18 0.75 8.06 -2.91 -0.02 0.72 16 34 H 0.17 1.54 8.06 -2.91 -0.02 1.52 16 35 H 0.15 3.28 7.82 -2.91 -0.02 3.26 16 36 H 0.08 2.09 6.70 -2.39 -0.02 2.07 16 37 H 0.06 2.44 5.65 -2.38 -0.01 2.42 16 38 H 0.10 2.47 5.10 -2.39 -0.01 2.46 16 39 H 0.08 2.72 8.14 -2.38 -0.02 2.70 16 40 H 0.08 2.76 8.14 -2.39 -0.02 2.74 16 41 H 0.07 3.82 5.87 -2.38 -0.01 3.81 16 42 H 0.02 0.80 5.49 -2.39 -0.01 0.79 16 43 H 0.25 13.82 8.31 -92.71 -0.77 13.05 16 44 H 0.03 1.39 8.14 -2.38 -0.02 1.37 16 45 H 0.02 0.95 8.04 -2.39 -0.02 0.93 16 46 H 0.16 3.47 4.39 -2.91 -0.01 3.46 16 47 H 0.15 2.96 8.06 -2.91 -0.02 2.94 16 Total: -1.00 -70.43 370.37 3.26 -67.17 By element: Atomic # 1 Polarization: 16.04 SS G_CDS: 1.00 Total: 17.04 kcal Atomic # 6 Polarization: 6.13 SS G_CDS: 6.26 Total: 12.40 kcal Atomic # 7 Polarization: -115.70 SS G_CDS: -5.97 Total: -121.66 kcal Atomic # 8 Polarization: -21.83 SS G_CDS: -0.06 Total: -21.89 kcal Atomic # 14 Polarization: 44.92 SS G_CDS: 2.03 Total: 46.95 kcal Total: -70.43 3.26 -67.17 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033519308.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.854 kcal (2) G-P(sol) polarization free energy of solvation -70.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.172 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds