Wall clock time and date at job start Tue Mar 31 2020 22:54:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46499 * 109.45844 * 2 1 4 4 C 1.34769 * 120.00063 * 60.00000 * 3 2 1 5 5 O 1.21564 * 120.00251 * 0.02562 * 4 3 2 6 6 C 1.47766 * 119.99802 * 180.02562 * 4 3 2 7 7 C 1.40629 * 119.80755 * 359.97438 * 6 4 3 8 8 C 1.35706 * 120.92280 * 180.02562 * 7 6 4 9 9 C 1.40753 * 120.11369 * 359.95751 * 8 7 6 10 10 N 1.33653 * 120.83536 * 179.97438 * 9 8 7 11 11 C 1.31120 * 121.39482 * 180.02562 * 10 9 8 12 12 C 1.39313 * 121.77093 * 0.02562 * 11 10 9 13 13 C 1.36582 * 119.90123 * 359.97438 * 12 11 10 14 14 C 1.40888 * 118.16200 * 359.76651 * 13 12 11 15 15 C 1.38557 * 119.80523 * 180.02562 * 6 4 3 16 16 C 1.53036 * 109.46012 * 119.97396 * 2 1 3 17 17 C 1.53166 * 109.32431 * 181.38602 * 16 2 1 18 18 N 1.46925 * 108.76859 * 305.35051 * 17 16 2 19 19 C 1.36937 * 120.63415 * 233.63462 * 18 17 16 20 20 H 1.07993 * 120.00127 * 151.80903 * 19 18 17 21 21 C 1.38807 * 119.99637 * 331.80212 * 19 18 17 22 22 N 1.31614 * 120.00675 * 343.09550 * 21 19 18 23 23 Si 1.86810 * 119.99763 * 163.08844 * 21 19 18 24 24 H 1.48508 * 109.46496 * 60.00609 * 23 21 19 25 25 H 1.48491 * 109.47038 * 180.02562 * 23 21 19 26 26 H 1.48496 * 109.47154 * 300.00839 * 23 21 19 27 27 C 1.46933 * 118.73655 * 53.60996 * 18 17 16 28 28 C 1.53039 * 109.45677 * 240.02659 * 2 1 3 29 29 H 1.08993 * 109.47464 * 60.00307 * 1 2 3 30 30 H 1.09004 * 109.47046 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.47132 * 299.99699 * 1 2 3 32 32 H 0.97003 * 119.99807 * 240.00198 * 3 2 1 33 33 H 1.08001 * 119.54094 * 0.02562 * 7 6 4 34 34 H 1.08001 * 119.93800 * 179.97438 * 8 7 6 35 35 H 1.08001 * 119.11305 * 180.02562 * 11 10 9 36 36 H 1.07996 * 120.05236 * 180.02562 * 12 11 10 37 37 H 1.08000 * 120.91703 * 179.97438 * 13 12 11 38 38 H 1.08003 * 120.29533 * 359.97438 * 15 6 4 39 39 H 1.09000 * 109.49862 * 301.32319 * 16 2 1 40 40 H 1.08995 * 109.50182 * 61.42386 * 16 2 1 41 41 H 1.09003 * 109.59036 * 185.57300 * 17 16 2 42 42 H 1.08997 * 109.71038 * 65.20607 * 17 16 2 43 43 H 0.96997 * 120.00442 * 179.97438 * 22 21 19 44 44 H 1.08992 * 109.58507 * 186.60091 * 27 18 17 45 45 H 1.09002 * 109.69967 * 66.24678 * 27 18 17 46 46 H 1.09003 * 109.50183 * 298.57878 * 28 2 1 47 47 H 1.09007 * 109.49725 * 58.64167 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0180 1.3813 0.0000 4 6 1.6923 2.2111 1.0108 5 8 0.9939 1.8133 1.9228 6 6 2.1841 3.6045 1.0104 7 6 2.9922 4.0603 -0.0464 8 6 3.4567 5.3352 -0.0693 9 6 3.1317 6.2241 0.9726 10 7 3.5817 7.4825 0.9648 11 6 3.2861 8.3196 1.9298 12 6 2.4911 7.9426 3.0100 13 6 1.9976 6.6711 3.0811 14 6 2.3128 5.7762 2.0396 15 6 1.8472 4.4540 2.0519 16 6 2.0399 -0.7209 1.2499 17 6 3.5711 -0.6889 1.2644 18 7 4.0676 -1.2493 0.0002 19 6 4.9753 -2.2747 0.0003 20 1 5.0026 -2.9718 -0.8240 21 6 5.8604 -2.4179 1.0600 22 7 6.0656 -1.4143 1.8864 23 14 6.7602 -4.0353 1.3133 24 1 7.5838 -4.3363 0.1147 25 1 7.6396 -3.9310 2.5052 26 1 5.7722 -5.1241 1.5212 27 6 3.5713 -0.6891 -1.2641 28 6 2.0398 -0.7209 -1.2500 29 1 -0.3634 0.5137 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 2.5756 1.6987 -0.7275 33 1 3.2468 3.3864 -0.8510 34 1 4.0766 5.6684 -0.8885 35 1 3.6693 9.3284 1.8861 36 1 2.2646 8.6550 3.7894 37 1 1.3800 6.3612 3.9112 38 1 1.2268 4.1023 2.8629 39 1 1.6574 -0.2209 2.1398 40 1 1.6977 -1.7557 1.2382 41 1 3.9413 -1.2849 2.0986 42 1 3.9163 0.3397 1.3686 43 1 6.6838 -1.5145 2.6271 44 1 3.9416 -1.2851 -2.0982 45 1 3.9144 0.3402 -1.3697 46 1 1.6976 -1.7558 -1.2383 47 1 1.6568 -0.2212 -2.1398 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001045543785.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:54:40 Heat of formation + Delta-G solvation = 44.218740 kcal Electronic energy + Delta-G solvation = -29553.093717 eV Core-core repulsion = 25701.243414 eV Total energy + Delta-G solvation = -3851.850303 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.07358 -40.04823 -37.73665 -36.56921 -34.45353 -33.69607 -32.26262 -31.20659 -30.30567 -30.00804 -29.88145 -27.43155 -25.06878 -24.06181 -24.00831 -22.42731 -22.25218 -21.46844 -20.64230 -18.82664 -18.35481 -17.90637 -17.05207 -16.72157 -15.99101 -15.03061 -14.91482 -14.79541 -14.58187 -14.37965 -14.27247 -13.98747 -13.80723 -13.57050 -13.40761 -13.28719 -13.24567 -13.05873 -12.40936 -12.22145 -11.94364 -11.70238 -11.61353 -11.56948 -11.39787 -11.11621 -10.92840 -10.80023 -10.70883 -10.40703 -10.24839 -9.98125 -9.79086 -9.72710 -9.56958 -9.16412 -9.00340 -8.63292 -8.44486 -8.40546 -6.65363 -5.77081 -3.20561 0.08021 0.49881 1.75279 2.37291 3.35258 3.38760 3.45009 3.45450 3.46026 3.98813 4.04568 4.38324 4.47418 4.50182 4.62980 4.71908 4.84966 4.96603 4.99915 5.25267 5.27795 5.35488 5.41027 5.52352 5.56057 5.60061 5.70450 5.75673 5.84185 5.94658 5.99611 6.09537 6.11972 6.15721 6.19672 6.28689 6.36581 6.45399 6.51810 6.57518 6.65981 6.73273 6.81065 6.92076 7.07487 7.42338 7.66598 7.71655 7.80328 7.85938 8.46352 8.49967 9.22548 9.85936 10.42576 11.30725 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.013881 B = 0.003046 C = 0.002770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2016.650342 B = 9189.579716 C =10106.931307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.184 3.816 3 N -0.702 5.702 4 C 0.560 3.440 5 O -0.535 6.535 6 C -0.124 4.124 7 C -0.070 4.070 8 C -0.099 4.099 9 C 0.141 3.859 10 N -0.478 5.478 11 C 0.136 3.864 12 C -0.184 4.184 13 C -0.045 4.045 14 C -0.113 4.113 15 C -0.029 4.029 16 C -0.151 4.151 17 C 0.178 3.822 18 N -0.590 5.590 19 C -0.256 4.256 20 H 0.064 0.936 21 C 0.004 3.996 22 N -0.900 5.900 23 Si 0.902 3.098 24 H -0.283 1.283 25 H -0.291 1.291 26 H -0.284 1.284 27 C 0.146 3.854 28 C -0.138 4.138 29 H 0.046 0.954 30 H 0.059 0.941 31 H 0.073 0.927 32 H 0.397 0.603 33 H 0.134 0.866 34 H 0.141 0.859 35 H 0.159 0.841 36 H 0.138 0.862 37 H 0.142 0.858 38 H 0.145 0.855 39 H 0.071 0.929 40 H 0.060 0.940 41 H 0.084 0.916 42 H 0.016 0.984 43 H 0.254 0.746 44 H 0.056 0.944 45 H 0.012 0.988 46 H 0.076 0.924 47 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.213 16.808 -1.856 19.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.099 3.901 3 N -0.353 5.353 4 C 0.347 3.653 5 O -0.414 6.414 6 C -0.127 4.127 7 C -0.091 4.091 8 C -0.117 4.117 9 C 0.020 3.980 10 N -0.186 5.186 11 C -0.037 4.037 12 C -0.203 4.203 13 C -0.071 4.071 14 C -0.115 4.115 15 C -0.049 4.049 16 C -0.191 4.191 17 C 0.052 3.948 18 N -0.313 5.313 19 C -0.385 4.385 20 H 0.082 0.918 21 C -0.195 4.195 22 N -0.544 5.544 23 Si 0.731 3.269 24 H -0.209 1.209 25 H -0.217 1.217 26 H -0.210 1.210 27 C 0.019 3.981 28 C -0.178 4.178 29 H 0.065 0.935 30 H 0.078 0.922 31 H 0.092 0.908 32 H 0.233 0.767 33 H 0.152 0.848 34 H 0.158 0.842 35 H 0.176 0.824 36 H 0.156 0.844 37 H 0.159 0.841 38 H 0.163 0.837 39 H 0.090 0.910 40 H 0.079 0.921 41 H 0.102 0.898 42 H 0.034 0.966 43 H 0.064 0.936 44 H 0.074 0.926 45 H 0.030 0.970 46 H 0.094 0.906 47 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -10.043 16.647 -1.848 19.530 hybrid contribution 0.393 -0.875 0.562 1.112 sum -9.650 15.772 -1.286 18.535 Atomic orbital electron populations 1.22230 0.95331 1.01946 1.02348 1.20305 0.92628 0.79818 0.97343 1.46026 1.52581 1.12191 1.24543 1.18022 0.80315 0.84679 0.82288 1.90696 1.38394 1.76732 1.35600 1.20107 1.01108 0.94814 0.96668 1.21010 0.94952 0.95734 0.97377 1.20667 1.00584 0.92366 0.98093 1.18996 0.94097 0.91147 0.93779 1.68067 1.21448 1.02518 1.26521 1.23014 0.92778 0.98997 0.88881 1.21881 1.00512 0.97386 1.00560 1.21572 0.96096 0.92880 0.96594 1.18812 1.00735 0.95240 0.96713 1.21434 0.95739 0.90673 0.97086 1.22580 1.00831 0.99120 0.96575 1.20680 0.87209 0.96962 0.89953 1.44051 1.48344 1.39541 0.99365 1.19117 1.09781 1.02895 1.06728 0.91806 1.25044 0.97187 0.97333 0.99924 1.70025 1.37328 1.29001 1.18055 0.86391 0.79291 0.83868 0.77315 1.20923 1.21665 1.21045 1.20857 0.90425 0.96152 0.90694 1.22349 0.99704 1.00603 0.95107 0.93458 0.92165 0.90768 0.76746 0.84812 0.84160 0.82353 0.84395 0.84065 0.83686 0.91017 0.92136 0.89827 0.96563 0.93614 0.92586 0.96997 0.90585 0.92592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.39 8.40 37.16 0.31 -2.08 16 2 C 0.18 3.07 0.66 -131.78 -0.09 2.98 16 3 N -0.70 -10.96 4.05 -48.53 -0.20 -11.16 16 4 C 0.56 9.17 7.18 -12.37 -0.09 9.08 16 5 O -0.54 -10.03 12.52 5.31 0.07 -9.96 16 6 C -0.12 -1.75 5.87 -104.98 -0.62 -2.37 16 7 C -0.07 -0.87 9.44 -39.59 -0.37 -1.24 16 8 C -0.10 -1.20 9.95 -39.54 -0.39 -1.59 16 9 C 0.14 1.82 6.61 -84.78 -0.56 1.26 16 10 N -0.48 -5.84 10.33 -10.92 -0.11 -5.95 16 11 C 0.14 1.23 11.15 -17.46 -0.19 1.04 16 12 C -0.18 -1.44 10.03 -39.78 -0.40 -1.84 16 13 C -0.05 -0.42 9.89 -39.18 -0.39 -0.81 16 14 C -0.11 -1.38 5.74 -106.82 -0.61 -1.99 16 15 C -0.03 -0.39 9.35 -38.73 -0.36 -0.75 16 16 C -0.15 -3.06 4.66 -26.63 -0.12 -3.18 16 17 C 0.18 4.30 5.04 -3.72 -0.02 4.28 16 18 N -0.59 -14.43 2.99 -172.34 -0.52 -14.95 16 19 C -0.26 -6.94 9.58 -15.06 -0.14 -7.08 16 20 H 0.06 1.69 7.88 -52.49 -0.41 1.28 16 21 C 0.00 0.11 4.92 -17.43 -0.09 0.03 16 22 N -0.90 -26.31 11.20 55.49 0.62 -25.69 16 23 Si 0.90 21.76 29.59 -169.99 -5.03 16.73 16 24 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 25 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 26 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 27 C 0.15 2.85 6.24 -3.71 -0.02 2.82 16 28 C -0.14 -2.22 4.96 -26.61 -0.13 -2.36 16 29 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 30 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.07 1.22 6.16 -51.93 -0.32 0.90 16 32 H 0.40 5.50 5.25 -40.82 -0.21 5.28 16 33 H 0.13 1.41 6.35 -52.49 -0.33 1.08 16 34 H 0.14 1.46 8.06 -52.49 -0.42 1.04 16 35 H 0.16 0.90 8.06 -52.49 -0.42 0.48 16 36 H 0.14 0.64 8.06 -52.49 -0.42 0.22 16 37 H 0.14 0.96 8.06 -52.49 -0.42 0.54 16 38 H 0.15 1.80 7.62 -52.48 -0.40 1.40 16 39 H 0.07 1.51 6.20 -51.93 -0.32 1.18 16 40 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 41 H 0.08 2.32 6.06 -51.93 -0.31 2.01 16 42 H 0.02 0.42 7.74 -51.93 -0.40 0.02 16 43 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 44 H 0.06 1.08 7.93 -51.93 -0.41 0.67 16 45 H 0.01 0.23 6.94 -51.93 -0.36 -0.13 16 46 H 0.08 1.27 8.14 -51.93 -0.42 0.84 16 47 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 LS Contribution 371.06 15.07 5.59 5.59 Total: -1.00 -32.84 371.06 -10.30 -43.14 By element: Atomic # 1 Polarization: 12.48 SS G_CDS: -6.43 Total: 6.05 kcal Atomic # 6 Polarization: 0.49 SS G_CDS: -4.29 Total: -3.80 kcal Atomic # 7 Polarization: -57.54 SS G_CDS: -0.20 Total: -57.74 kcal Atomic # 8 Polarization: -10.03 SS G_CDS: 0.07 Total: -9.96 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.03 Total: 16.73 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -32.84 -10.30 -43.14 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045543785.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.359 kcal (2) G-P(sol) polarization free energy of solvation -32.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.140 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds