Wall clock time and date at job start Tue Mar 31 2020 22:54:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46499 * 109.45844 * 2 1 4 4 C 1.34769 * 120.00063 * 60.00000 * 3 2 1 5 5 O 1.21564 * 120.00251 * 0.02562 * 4 3 2 6 6 C 1.47766 * 119.99802 * 180.02562 * 4 3 2 7 7 C 1.40629 * 119.80755 * 359.97438 * 6 4 3 8 8 C 1.35706 * 120.92280 * 180.02562 * 7 6 4 9 9 C 1.40753 * 120.11369 * 359.95751 * 8 7 6 10 10 N 1.33653 * 120.83536 * 179.97438 * 9 8 7 11 11 C 1.31120 * 121.39482 * 180.02562 * 10 9 8 12 12 C 1.39313 * 121.77093 * 0.02562 * 11 10 9 13 13 C 1.36582 * 119.90123 * 359.97438 * 12 11 10 14 14 C 1.40888 * 118.16200 * 359.76651 * 13 12 11 15 15 C 1.38557 * 119.80523 * 180.02562 * 6 4 3 16 16 C 1.53036 * 109.46012 * 119.97396 * 2 1 3 17 17 C 1.53166 * 109.32431 * 181.38602 * 16 2 1 18 18 N 1.46925 * 108.76859 * 305.35051 * 17 16 2 19 19 C 1.36937 * 120.63415 * 233.63462 * 18 17 16 20 20 H 1.07993 * 120.00127 * 151.80903 * 19 18 17 21 21 C 1.38807 * 119.99637 * 331.80212 * 19 18 17 22 22 N 1.31614 * 120.00675 * 343.09550 * 21 19 18 23 23 Si 1.86810 * 119.99763 * 163.08844 * 21 19 18 24 24 H 1.48508 * 109.46496 * 60.00609 * 23 21 19 25 25 H 1.48491 * 109.47038 * 180.02562 * 23 21 19 26 26 H 1.48496 * 109.47154 * 300.00839 * 23 21 19 27 27 C 1.46933 * 118.73655 * 53.60996 * 18 17 16 28 28 C 1.53039 * 109.45677 * 240.02659 * 2 1 3 29 29 H 1.08993 * 109.47464 * 60.00307 * 1 2 3 30 30 H 1.09004 * 109.47046 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.47132 * 299.99699 * 1 2 3 32 32 H 0.97003 * 119.99807 * 240.00198 * 3 2 1 33 33 H 1.08001 * 119.54094 * 0.02562 * 7 6 4 34 34 H 1.08001 * 119.93800 * 179.97438 * 8 7 6 35 35 H 1.08001 * 119.11305 * 180.02562 * 11 10 9 36 36 H 1.07996 * 120.05236 * 180.02562 * 12 11 10 37 37 H 1.08000 * 120.91703 * 179.97438 * 13 12 11 38 38 H 1.08003 * 120.29533 * 359.97438 * 15 6 4 39 39 H 1.09000 * 109.49862 * 301.32319 * 16 2 1 40 40 H 1.08995 * 109.50182 * 61.42386 * 16 2 1 41 41 H 1.09003 * 109.59036 * 185.57300 * 17 16 2 42 42 H 1.08997 * 109.71038 * 65.20607 * 17 16 2 43 43 H 0.96997 * 120.00442 * 179.97438 * 22 21 19 44 44 H 1.08992 * 109.58507 * 186.60091 * 27 18 17 45 45 H 1.09002 * 109.69967 * 66.24678 * 27 18 17 46 46 H 1.09003 * 109.50183 * 298.57878 * 28 2 1 47 47 H 1.09007 * 109.49725 * 58.64167 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0180 1.3813 0.0000 4 6 1.6923 2.2111 1.0108 5 8 0.9939 1.8133 1.9228 6 6 2.1841 3.6045 1.0104 7 6 2.9922 4.0603 -0.0464 8 6 3.4567 5.3352 -0.0693 9 6 3.1317 6.2241 0.9726 10 7 3.5817 7.4825 0.9648 11 6 3.2861 8.3196 1.9298 12 6 2.4911 7.9426 3.0100 13 6 1.9976 6.6711 3.0811 14 6 2.3128 5.7762 2.0396 15 6 1.8472 4.4540 2.0519 16 6 2.0399 -0.7209 1.2499 17 6 3.5711 -0.6889 1.2644 18 7 4.0676 -1.2493 0.0002 19 6 4.9753 -2.2747 0.0003 20 1 5.0026 -2.9718 -0.8240 21 6 5.8604 -2.4179 1.0600 22 7 6.0656 -1.4143 1.8864 23 14 6.7602 -4.0353 1.3133 24 1 7.5838 -4.3363 0.1147 25 1 7.6396 -3.9310 2.5052 26 1 5.7722 -5.1241 1.5212 27 6 3.5713 -0.6891 -1.2641 28 6 2.0398 -0.7209 -1.2500 29 1 -0.3634 0.5137 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 2.5756 1.6987 -0.7275 33 1 3.2468 3.3864 -0.8510 34 1 4.0766 5.6684 -0.8885 35 1 3.6693 9.3284 1.8861 36 1 2.2646 8.6550 3.7894 37 1 1.3800 6.3612 3.9112 38 1 1.2268 4.1023 2.8629 39 1 1.6574 -0.2209 2.1398 40 1 1.6977 -1.7557 1.2382 41 1 3.9413 -1.2849 2.0986 42 1 3.9163 0.3397 1.3686 43 1 6.6838 -1.5145 2.6271 44 1 3.9416 -1.2851 -2.0982 45 1 3.9144 0.3402 -1.3697 46 1 1.6976 -1.7558 -1.2383 47 1 1.6568 -0.2212 -2.1398 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001045543785.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:54:39 Heat of formation + Delta-G solvation = 24.646933 kcal Electronic energy + Delta-G solvation = -29553.942414 eV Core-core repulsion = 25701.243414 eV Total energy + Delta-G solvation = -3852.699000 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.02105 -41.26385 -39.09025 -37.64271 -36.14531 -34.52719 -33.76342 -32.77228 -31.61890 -31.21360 -31.01454 -29.07677 -26.11721 -25.78200 -24.86237 -23.94921 -23.33829 -22.76339 -22.08956 -20.26841 -19.46266 -18.94734 -18.60911 -17.76126 -16.95358 -16.82631 -16.34931 -16.07733 -15.69027 -15.51903 -15.36131 -15.27636 -15.14811 -14.94889 -14.85815 -14.57965 -14.39535 -14.02402 -13.98685 -13.31418 -13.20522 -13.10791 -12.96930 -12.85901 -12.66849 -12.56350 -12.48462 -12.46339 -12.26594 -11.97332 -11.75750 -11.60682 -11.37857 -11.31230 -10.59105 -10.52487 -10.51775 -10.04681 -9.80241 -9.33607 -8.65679 -7.86302 -5.31961 -0.79606 -0.34760 0.87821 1.43140 1.45163 1.48325 1.54435 2.16248 2.36391 2.51140 3.08285 3.26645 3.28572 3.54791 3.59048 3.72102 3.73187 3.88158 3.97879 4.00717 4.05542 4.08221 4.13734 4.29275 4.49545 4.51720 4.67702 4.71368 4.74639 4.80606 4.87633 4.88754 4.94191 4.98029 5.01597 5.05271 5.14347 5.16735 5.22488 5.27616 5.35312 5.39037 5.48141 5.50638 5.62839 5.67103 5.75185 5.77909 6.38964 6.61485 6.87905 7.15138 7.25443 7.87804 8.39275 9.19147 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.013881 B = 0.003046 C = 0.002770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2016.650342 B = 9189.579716 C =10106.931307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.186 3.814 3 N -0.699 5.699 4 C 0.558 3.442 5 O -0.566 6.566 6 C -0.147 4.147 7 C -0.074 4.074 8 C -0.104 4.104 9 C 0.122 3.878 10 N -0.508 5.508 11 C 0.138 3.862 12 C -0.170 4.170 13 C -0.054 4.054 14 C -0.130 4.130 15 C -0.031 4.031 16 C -0.139 4.139 17 C 0.194 3.806 18 N -0.607 5.607 19 C -0.261 4.261 20 H 0.070 0.930 21 C -0.052 4.052 22 N -0.935 5.935 23 Si 0.964 3.036 24 H -0.272 1.272 25 H -0.298 1.298 26 H -0.280 1.280 27 C 0.139 3.861 28 C -0.124 4.124 29 H 0.070 0.930 30 H 0.070 0.930 31 H 0.056 0.944 32 H 0.405 0.595 33 H 0.148 0.852 34 H 0.153 0.847 35 H 0.195 0.805 36 H 0.179 0.821 37 H 0.165 0.835 38 H 0.145 0.855 39 H 0.058 0.942 40 H 0.056 0.944 41 H 0.040 0.960 42 H -0.009 1.009 43 H 0.247 0.753 44 H 0.061 0.939 45 H 0.021 0.979 46 H 0.075 0.925 47 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.155 18.329 -2.976 21.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.101 3.899 3 N -0.350 5.350 4 C 0.346 3.654 5 O -0.448 6.448 6 C -0.150 4.150 7 C -0.094 4.094 8 C -0.123 4.123 9 C 0.002 3.998 10 N -0.217 5.217 11 C -0.034 4.034 12 C -0.190 4.190 13 C -0.080 4.080 14 C -0.132 4.132 15 C -0.051 4.051 16 C -0.179 4.179 17 C 0.068 3.932 18 N -0.330 5.330 19 C -0.391 4.391 20 H 0.088 0.912 21 C -0.248 4.248 22 N -0.581 5.581 23 Si 0.793 3.207 24 H -0.198 1.198 25 H -0.224 1.224 26 H -0.206 1.206 27 C 0.014 3.986 28 C -0.164 4.164 29 H 0.089 0.911 30 H 0.089 0.911 31 H 0.075 0.925 32 H 0.243 0.757 33 H 0.165 0.835 34 H 0.171 0.829 35 H 0.211 0.789 36 H 0.196 0.804 37 H 0.182 0.818 38 H 0.162 0.838 39 H 0.077 0.923 40 H 0.075 0.925 41 H 0.058 0.942 42 H 0.009 0.991 43 H 0.056 0.944 44 H 0.079 0.921 45 H 0.039 0.961 46 H 0.094 0.906 47 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -10.999 18.173 -3.021 21.456 hybrid contribution 0.696 -1.156 0.963 1.658 sum -10.303 17.017 -2.058 19.999 Atomic orbital electron populations 1.22116 0.93350 1.02741 1.02650 1.20242 0.94027 0.80022 0.95641 1.45959 1.52611 1.11656 1.24787 1.18381 0.79702 0.85546 0.81784 1.90670 1.39890 1.77529 1.36666 1.20030 1.02933 0.93840 0.98220 1.21085 0.94822 0.96194 0.97342 1.20866 1.00626 0.92263 0.98535 1.19244 0.94523 0.91874 0.94205 1.68115 1.22745 1.02554 1.28249 1.23763 0.91627 0.99907 0.88100 1.22331 0.98585 0.97308 1.00742 1.21942 0.96432 0.93166 0.96459 1.19002 1.01165 0.95264 0.97775 1.21538 0.95520 0.91259 0.96737 1.22375 0.97678 0.99404 0.98436 1.20304 0.89611 0.94388 0.88932 1.44269 1.48243 1.39574 1.00958 1.19500 1.09435 1.03611 1.06565 0.91209 1.25803 0.98632 1.00213 1.00130 1.70197 1.38383 1.30900 1.18627 0.85386 0.78088 0.80206 0.77051 1.19789 1.22431 1.20589 1.21086 0.92768 0.96325 0.88445 1.22225 0.96729 1.01103 0.96297 0.91075 0.91111 0.92529 0.75704 0.83454 0.82904 0.78867 0.80365 0.81779 0.83762 0.92339 0.92487 0.94175 0.99094 0.94433 0.92093 0.96069 0.90591 0.88417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.22 8.40 71.98 0.60 -3.61 16 2 C 0.19 6.03 0.66 3.63 0.00 6.03 16 3 N -0.70 -21.56 4.05 -425.72 -1.73 -23.28 16 4 C 0.56 18.67 7.18 86.76 0.62 19.29 16 5 O -0.57 -21.98 12.52 -3.92 -0.05 -22.03 16 6 C -0.15 -4.28 5.87 -20.10 -0.12 -4.40 16 7 C -0.07 -1.86 9.44 22.27 0.21 -1.65 16 8 C -0.10 -2.54 9.95 22.30 0.22 -2.32 16 9 C 0.12 3.12 6.61 40.35 0.27 3.39 16 10 N -0.51 -11.76 10.33 -188.45 -1.95 -13.70 16 11 C 0.14 2.12 11.15 85.06 0.95 3.06 16 12 C -0.17 -2.12 10.03 22.14 0.22 -1.89 16 13 C -0.05 -0.91 9.89 22.53 0.22 -0.69 16 14 C -0.13 -3.12 5.74 -21.29 -0.12 -3.24 16 15 C -0.03 -0.83 9.35 22.82 0.21 -0.61 16 16 C -0.14 -5.76 4.66 30.66 0.14 -5.61 16 17 C 0.19 9.76 5.04 86.35 0.44 10.20 16 18 N -0.61 -30.00 2.99 -699.16 -2.09 -32.09 16 19 C -0.26 -14.29 9.58 84.03 0.81 -13.48 16 20 H 0.07 3.67 7.88 -2.91 -0.02 3.65 16 21 C -0.05 -2.98 4.92 84.86 0.42 -2.56 16 22 N -0.93 -56.83 11.20 21.65 0.24 -56.59 16 23 Si 0.96 45.56 29.59 68.60 2.03 47.59 16 24 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 25 H -0.30 -14.29 7.11 99.48 0.71 -13.58 16 26 H -0.28 -12.88 7.11 99.48 0.71 -12.18 16 27 C 0.14 5.26 6.24 86.36 0.54 5.80 16 28 C -0.12 -3.70 4.96 30.67 0.15 -3.55 16 29 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 30 H 0.07 1.82 8.14 -2.38 -0.02 1.81 16 31 H 0.06 1.82 6.16 -2.38 -0.01 1.81 16 32 H 0.41 10.86 5.25 -92.71 -0.49 10.38 16 33 H 0.15 3.07 6.35 -2.91 -0.02 3.05 16 34 H 0.15 3.16 8.06 -2.91 -0.02 3.13 16 35 H 0.19 1.44 8.06 -2.91 -0.02 1.42 16 36 H 0.18 0.76 8.06 -2.91 -0.02 0.74 16 37 H 0.16 1.89 8.06 -2.91 -0.02 1.86 16 38 H 0.14 3.74 7.62 -2.91 -0.02 3.72 16 39 H 0.06 2.57 6.20 -2.39 -0.01 2.55 16 40 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 41 H 0.04 2.35 6.06 -2.39 -0.01 2.34 16 42 H -0.01 -0.49 7.74 -2.39 -0.02 -0.51 16 43 H 0.25 14.69 8.31 -92.71 -0.77 13.92 16 44 H 0.06 2.24 7.93 -2.39 -0.02 2.22 16 45 H 0.02 0.78 6.94 -2.39 -0.02 0.76 16 46 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 47 H 0.10 2.18 8.14 -2.38 -0.02 2.16 16 Total: -1.00 -74.76 371.06 2.76 -72.01 By element: Atomic # 1 Polarization: 23.44 SS G_CDS: 0.51 Total: 23.95 kcal Atomic # 6 Polarization: -1.64 SS G_CDS: 5.79 Total: 4.15 kcal Atomic # 7 Polarization: -120.14 SS G_CDS: -5.52 Total: -125.67 kcal Atomic # 8 Polarization: -21.98 SS G_CDS: -0.05 Total: -22.03 kcal Atomic # 14 Polarization: 45.56 SS G_CDS: 2.03 Total: 47.59 kcal Total: -74.76 2.76 -72.01 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045543785.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.652 kcal (2) G-P(sol) polarization free energy of solvation -74.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.005 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds