Wall clock time and date at job start Tue Mar 31 2020 22:55:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46501 * 109.45938 * 2 1 4 4 C 1.34770 * 120.00445 * 60.02373 * 3 2 1 5 5 O 1.21592 * 119.99795 * 0.02562 * 4 3 2 6 6 C 1.47560 * 120.00585 * 179.97438 * 4 3 2 7 7 C 1.38707 * 120.43152 * 354.35596 * 6 4 3 8 8 C 1.39004 * 120.75587 * 179.97438 * 7 6 4 9 9 C 1.36346 * 121.18769 * 359.97438 * 8 7 6 10 10 C 1.40363 * 119.92803 * 359.97438 * 9 8 7 11 11 C 1.40682 * 122.10201 * 179.97438 * 10 9 8 12 12 C 1.36260 * 118.66491 * 180.30583 * 11 10 9 13 13 N 1.32511 * 121.83913 * 359.42147 * 12 11 10 14 14 C 1.31305 * 122.72110 * 0.60021 * 13 12 11 15 15 C 1.40137 * 119.91959 * 359.70495 * 14 13 12 16 16 C 1.53039 * 109.44728 * 119.96375 * 2 1 3 17 17 C 1.53195 * 109.31102 * 181.37968 * 16 2 1 18 18 N 1.46926 * 108.77576 * 305.36429 * 17 16 2 19 19 C 1.36939 * 120.63091 * 233.63371 * 18 17 16 20 20 H 1.07997 * 119.99774 * 28.29910 * 19 18 17 21 21 C 1.38814 * 119.99677 * 208.30203 * 19 18 17 22 22 N 1.31616 * 120.00109 * 16.60130 * 21 19 18 23 23 Si 1.86802 * 119.99818 * 196.59811 * 21 19 18 24 24 H 1.48496 * 109.47165 * 59.99981 * 23 21 19 25 25 H 1.48500 * 109.46895 * 180.02562 * 23 21 19 26 26 H 1.48502 * 109.46899 * 300.00122 * 23 21 19 27 27 C 1.46928 * 118.73936 * 53.61055 * 18 17 16 28 28 C 1.53041 * 109.45798 * 240.02617 * 2 1 3 29 29 H 1.09008 * 109.46742 * 60.00106 * 1 2 3 30 30 H 1.09002 * 109.47078 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.46974 * 300.00041 * 1 2 3 32 32 H 0.97004 * 119.99578 * 240.02645 * 3 2 1 33 33 H 1.08005 * 119.62620 * 359.97438 * 7 6 4 34 34 H 1.07997 * 119.40686 * 179.97438 * 8 7 6 35 35 H 1.07998 * 120.03501 * 179.97438 * 9 8 7 36 36 H 1.07996 * 120.66590 * 0.02936 * 11 10 9 37 37 H 1.08006 * 119.07849 * 179.72514 * 12 11 10 38 38 H 1.08008 * 120.04299 * 179.73107 * 14 13 12 39 39 H 1.08998 * 109.49914 * 301.33092 * 16 2 1 40 40 H 1.08999 * 109.49813 * 61.43010 * 16 2 1 41 41 H 1.08997 * 109.58549 * 185.58121 * 17 16 2 42 42 H 1.08998 * 109.70491 * 65.21953 * 17 16 2 43 43 H 0.96998 * 120.00420 * 179.97438 * 22 21 19 44 44 H 1.08994 * 109.58658 * 186.60523 * 27 18 17 45 45 H 1.08996 * 109.70718 * 66.24336 * 27 18 17 46 46 H 1.08995 * 109.49957 * 298.57796 * 28 2 1 47 47 H 1.08998 * 109.49904 * 58.64653 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0181 1.3813 0.0000 4 6 1.6928 2.2110 1.0110 5 8 0.9946 1.8130 1.9234 6 6 2.1848 3.6022 1.0113 7 6 3.0761 4.0324 0.0394 8 6 3.5435 5.3415 0.0330 9 6 3.1418 6.2393 0.9773 10 6 2.2400 5.8462 1.9785 11 6 1.7957 6.7342 2.9750 12 6 0.9242 6.2764 3.9172 13 7 0.4800 5.0280 3.9106 14 6 0.8526 4.1468 3.0114 15 6 1.7516 4.5157 2.0017 16 6 2.0396 -0.7207 1.2502 17 6 3.5711 -0.6888 1.2645 18 7 4.0677 -1.2493 0.0004 19 6 4.9753 -2.2747 0.0006 20 1 5.0010 -2.9729 0.8241 21 6 5.8624 -2.4164 -1.0577 22 7 6.0646 -1.4136 -1.8858 23 14 6.7693 -4.0305 -1.3063 24 1 5.7860 -5.1239 -1.5134 25 1 7.6508 -3.9247 -2.4967 26 1 7.5924 -4.3258 -0.1061 27 6 3.5715 -0.6890 -1.2640 28 6 2.0399 -0.7209 -1.2500 29 1 -0.3633 0.5139 -0.8901 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8899 32 1 2.5754 1.6988 -0.7278 33 1 3.4107 3.3424 -0.7211 34 1 4.2373 5.6531 -0.7338 35 1 3.5171 7.2517 0.9549 36 1 2.1419 7.7570 2.9956 37 1 0.5823 6.9513 4.6880 38 1 0.4663 3.1388 3.0495 39 1 1.6569 -0.2206 2.1399 40 1 1.6974 -1.7556 1.2384 41 1 3.9412 -1.2848 2.0987 42 1 3.9163 0.3398 1.3688 43 1 6.6848 -1.5125 -2.6250 44 1 3.9417 -1.2851 -2.0980 45 1 3.9145 0.3401 -1.3697 46 1 1.6976 -1.7557 -1.2382 47 1 1.6570 -0.2212 -2.1398 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001045606669.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:55:06 Heat of formation + Delta-G solvation = 48.801048 kcal Electronic energy + Delta-G solvation = -29980.462008 eV Core-core repulsion = 26128.810409 eV Total energy + Delta-G solvation = -3851.651599 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.20784 -39.92326 -37.65558 -37.14386 -34.51994 -33.18492 -32.08588 -31.29594 -30.98801 -29.98191 -29.39989 -27.45042 -24.85591 -24.13164 -23.62334 -23.43729 -22.34148 -21.21497 -20.49319 -18.90552 -18.10452 -17.79021 -16.90614 -16.69841 -16.18939 -15.35132 -15.08445 -14.90087 -14.87070 -14.48137 -14.14714 -13.87888 -13.81517 -13.49133 -13.43383 -13.21326 -13.10748 -12.79785 -12.47606 -12.19896 -12.18164 -11.86897 -11.67499 -11.59829 -11.34943 -11.24523 -10.95846 -10.73779 -10.41935 -10.34702 -10.24683 -9.90618 -9.84607 -9.68776 -9.51277 -9.28757 -9.12206 -8.76362 -8.50221 -8.21138 -6.69440 -5.83489 -3.25079 -0.00780 0.75050 1.53545 2.66446 3.25881 3.29939 3.36183 3.41537 3.43457 4.02035 4.35692 4.43050 4.47186 4.55365 4.63561 4.74816 4.79630 4.92983 5.14480 5.22077 5.32456 5.36715 5.46510 5.50820 5.56396 5.57980 5.59419 5.79250 5.87844 5.97761 6.02505 6.02720 6.15867 6.16190 6.24906 6.29424 6.38677 6.47277 6.51585 6.63562 6.65801 6.67945 6.81532 6.91908 7.02339 7.23980 7.52699 7.73374 7.77847 7.95432 8.37602 8.41566 9.17858 9.81006 10.37981 11.25213 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.016940 B = 0.003134 C = 0.002907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1652.448896 B = 8931.766997 C = 9628.411898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.183 3.817 3 N -0.697 5.697 4 C 0.562 3.438 5 O -0.534 6.534 6 C -0.096 4.096 7 C -0.078 4.078 8 C -0.103 4.103 9 C -0.093 4.093 10 C -0.031 4.031 11 C -0.165 4.165 12 C 0.075 3.925 13 N -0.493 5.493 14 C 0.148 3.852 15 C -0.079 4.079 16 C -0.143 4.143 17 C 0.150 3.850 18 N -0.590 5.590 19 C -0.251 4.251 20 H 0.065 0.935 21 C 0.003 3.997 22 N -0.905 5.905 23 Si 0.902 3.098 24 H -0.284 1.284 25 H -0.291 1.291 26 H -0.283 1.283 27 C 0.173 3.827 28 C -0.147 4.147 29 H 0.048 0.952 30 H 0.060 0.940 31 H 0.074 0.926 32 H 0.400 0.600 33 H 0.136 0.864 34 H 0.135 0.865 35 H 0.134 0.866 36 H 0.136 0.864 37 H 0.150 0.850 38 H 0.202 0.798 39 H 0.075 0.925 40 H 0.065 0.935 41 H 0.051 0.949 42 H 0.014 0.986 43 H 0.254 0.746 44 H 0.090 0.910 45 H 0.014 0.986 46 H 0.073 0.927 47 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.809 15.478 2.421 17.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.098 3.902 3 N -0.347 5.347 4 C 0.349 3.651 5 O -0.415 6.415 6 C -0.101 4.101 7 C -0.097 4.097 8 C -0.122 4.122 9 C -0.111 4.111 10 C -0.036 4.036 11 C -0.185 4.185 12 C -0.068 4.068 13 N -0.201 5.201 14 C -0.022 4.022 15 C -0.082 4.082 16 C -0.183 4.183 17 C 0.023 3.977 18 N -0.313 5.313 19 C -0.380 4.380 20 H 0.082 0.918 21 C -0.196 4.196 22 N -0.550 5.550 23 Si 0.732 3.268 24 H -0.210 1.210 25 H -0.217 1.217 26 H -0.209 1.209 27 C 0.046 3.954 28 C -0.187 4.187 29 H 0.067 0.933 30 H 0.079 0.921 31 H 0.093 0.907 32 H 0.237 0.763 33 H 0.153 0.847 34 H 0.153 0.847 35 H 0.152 0.848 36 H 0.154 0.846 37 H 0.167 0.833 38 H 0.218 0.782 39 H 0.093 0.907 40 H 0.083 0.917 41 H 0.069 0.931 42 H 0.032 0.968 43 H 0.064 0.936 44 H 0.108 0.892 45 H 0.032 0.968 46 H 0.092 0.908 47 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -9.751 15.042 3.619 18.288 hybrid contribution 1.634 -0.211 -1.334 2.120 sum -8.117 14.831 2.285 17.061 Atomic orbital electron populations 1.22235 0.95123 1.02091 1.02452 1.20352 0.92782 0.79548 0.97470 1.46106 1.52112 1.12267 1.24262 1.17959 0.80243 0.84489 0.82394 1.90482 1.38988 1.76354 1.35628 1.20026 0.99596 0.93942 0.96536 1.21547 0.94634 0.96396 0.97083 1.20943 0.99399 0.92976 0.98893 1.21140 0.96158 1.00097 0.93697 1.18165 0.96633 0.92959 0.95864 1.21844 1.00320 1.00261 0.96081 1.22295 0.94298 0.92793 0.97415 1.67679 1.24492 1.02714 1.25227 1.24667 0.90213 1.00505 0.86815 1.18866 0.99161 0.93080 0.97112 1.22406 0.98954 0.99775 0.97157 1.20842 0.90873 0.96099 0.89848 1.44025 1.48289 1.39624 0.99380 1.19166 1.09436 1.02777 1.06653 0.91771 1.25019 0.97160 0.97433 0.99963 1.69990 1.37638 1.29080 1.18282 0.86370 0.79330 0.83768 0.77315 1.21037 1.21671 1.20918 1.20728 0.86790 0.96969 0.90880 1.22546 1.01470 1.00156 0.94481 0.93301 0.92058 0.90735 0.76313 0.84670 0.84715 0.84839 0.84597 0.83252 0.78217 0.90670 0.91651 0.93061 0.96779 0.93646 0.89222 0.96827 0.90816 0.92710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.31 8.40 37.16 0.31 -2.00 16 2 C 0.18 2.94 0.66 -131.77 -0.09 2.86 16 3 N -0.70 -10.39 4.05 -48.59 -0.20 -10.58 16 4 C 0.56 8.53 7.15 -12.46 -0.09 8.45 16 5 O -0.53 -8.96 9.69 5.28 0.05 -8.91 16 6 C -0.10 -1.31 5.90 -104.67 -0.62 -1.93 16 7 C -0.08 -0.89 9.51 -39.12 -0.37 -1.26 16 8 C -0.10 -0.98 9.93 -39.98 -0.40 -1.38 16 9 C -0.09 -0.88 9.79 -39.46 -0.39 -1.26 16 10 C -0.03 -0.36 5.75 -106.84 -0.61 -0.98 16 11 C -0.17 -1.68 9.88 -39.37 -0.39 -2.07 16 12 C 0.08 0.85 11.07 -17.97 -0.20 0.65 16 13 N -0.49 -7.01 10.30 -13.21 -0.14 -7.14 16 14 C 0.15 2.18 10.49 -17.06 -0.18 2.00 16 15 C -0.08 -1.10 5.76 -106.59 -0.61 -1.71 16 16 C -0.14 -2.58 4.67 -26.61 -0.12 -2.70 16 17 C 0.15 3.16 6.25 -3.71 -0.02 3.14 16 18 N -0.59 -14.13 2.99 -172.32 -0.52 -14.65 16 19 C -0.25 -6.71 9.58 -15.06 -0.14 -6.85 16 20 H 0.06 1.71 7.88 -52.49 -0.41 1.30 16 21 C 0.00 0.07 4.92 -17.43 -0.09 -0.02 16 22 N -0.91 -25.09 11.19 55.49 0.62 -24.47 16 23 Si 0.90 21.25 29.59 -169.99 -5.03 16.22 16 24 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 25 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 26 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 27 C 0.17 3.74 5.03 -3.70 -0.02 3.72 16 28 C -0.15 -2.53 4.96 -26.61 -0.13 -2.66 16 29 H 0.05 0.64 8.14 -51.92 -0.42 0.22 16 30 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.07 1.14 6.16 -51.93 -0.32 0.82 16 32 H 0.40 5.55 5.34 -40.82 -0.22 5.34 16 33 H 0.14 1.40 6.42 -52.48 -0.34 1.06 16 34 H 0.13 0.93 8.06 -52.49 -0.42 0.51 16 35 H 0.13 0.86 8.06 -52.49 -0.42 0.44 16 36 H 0.14 0.93 8.06 -52.49 -0.42 0.51 16 37 H 0.15 1.23 8.06 -52.48 -0.42 0.81 16 38 H 0.20 3.12 4.98 -52.48 -0.26 2.86 16 39 H 0.07 1.36 6.20 -51.93 -0.32 1.04 16 40 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 41 H 0.05 1.10 7.93 -51.93 -0.41 0.69 16 42 H 0.01 0.31 7.74 -51.93 -0.40 -0.09 16 43 H 0.25 6.85 8.31 -40.82 -0.34 6.51 16 44 H 0.09 2.22 6.06 -51.93 -0.31 1.91 16 45 H 0.01 0.30 6.94 -51.93 -0.36 -0.06 16 46 H 0.07 1.32 8.14 -51.93 -0.42 0.89 16 47 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 LS Contribution 365.73 15.07 5.51 5.51 Total: -1.00 -30.52 365.73 -10.16 -40.67 By element: Atomic # 1 Polarization: 13.66 SS G_CDS: -6.30 Total: 7.36 kcal Atomic # 6 Polarization: 0.15 SS G_CDS: -4.16 Total: -4.01 kcal Atomic # 7 Polarization: -56.62 SS G_CDS: -0.23 Total: -56.85 kcal Atomic # 8 Polarization: -8.96 SS G_CDS: 0.05 Total: -8.91 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.03 Total: 16.22 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -30.52 -10.16 -40.67 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045606669.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.474 kcal (2) G-P(sol) polarization free energy of solvation -30.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.673 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds