Wall clock time and date at job start Tue Mar 31 2020 22:55:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46501 * 109.45938 * 2 1 4 4 C 1.34770 * 120.00445 * 60.02373 * 3 2 1 5 5 O 1.21592 * 119.99795 * 0.02562 * 4 3 2 6 6 C 1.47560 * 120.00585 * 179.97438 * 4 3 2 7 7 C 1.38707 * 120.43152 * 354.35596 * 6 4 3 8 8 C 1.39004 * 120.75587 * 179.97438 * 7 6 4 9 9 C 1.36346 * 121.18769 * 359.97438 * 8 7 6 10 10 C 1.40363 * 119.92803 * 359.97438 * 9 8 7 11 11 C 1.40682 * 122.10201 * 179.97438 * 10 9 8 12 12 C 1.36260 * 118.66491 * 180.30583 * 11 10 9 13 13 N 1.32511 * 121.83913 * 359.42147 * 12 11 10 14 14 C 1.31305 * 122.72110 * 0.60021 * 13 12 11 15 15 C 1.40137 * 119.91959 * 359.70495 * 14 13 12 16 16 C 1.53039 * 109.44728 * 119.96375 * 2 1 3 17 17 C 1.53195 * 109.31102 * 181.37968 * 16 2 1 18 18 N 1.46926 * 108.77576 * 305.36429 * 17 16 2 19 19 C 1.36939 * 120.63091 * 233.63371 * 18 17 16 20 20 H 1.07997 * 119.99774 * 28.29910 * 19 18 17 21 21 C 1.38814 * 119.99677 * 208.30203 * 19 18 17 22 22 N 1.31616 * 120.00109 * 16.60130 * 21 19 18 23 23 Si 1.86802 * 119.99818 * 196.59811 * 21 19 18 24 24 H 1.48496 * 109.47165 * 59.99981 * 23 21 19 25 25 H 1.48500 * 109.46895 * 180.02562 * 23 21 19 26 26 H 1.48502 * 109.46899 * 300.00122 * 23 21 19 27 27 C 1.46928 * 118.73936 * 53.61055 * 18 17 16 28 28 C 1.53041 * 109.45798 * 240.02617 * 2 1 3 29 29 H 1.09008 * 109.46742 * 60.00106 * 1 2 3 30 30 H 1.09002 * 109.47078 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.46974 * 300.00041 * 1 2 3 32 32 H 0.97004 * 119.99578 * 240.02645 * 3 2 1 33 33 H 1.08005 * 119.62620 * 359.97438 * 7 6 4 34 34 H 1.07997 * 119.40686 * 179.97438 * 8 7 6 35 35 H 1.07998 * 120.03501 * 179.97438 * 9 8 7 36 36 H 1.07996 * 120.66590 * 0.02936 * 11 10 9 37 37 H 1.08006 * 119.07849 * 179.72514 * 12 11 10 38 38 H 1.08008 * 120.04299 * 179.73107 * 14 13 12 39 39 H 1.08998 * 109.49914 * 301.33092 * 16 2 1 40 40 H 1.08999 * 109.49813 * 61.43010 * 16 2 1 41 41 H 1.08997 * 109.58549 * 185.58121 * 17 16 2 42 42 H 1.08998 * 109.70491 * 65.21953 * 17 16 2 43 43 H 0.96998 * 120.00420 * 179.97438 * 22 21 19 44 44 H 1.08994 * 109.58658 * 186.60523 * 27 18 17 45 45 H 1.08996 * 109.70718 * 66.24336 * 27 18 17 46 46 H 1.08995 * 109.49957 * 298.57796 * 28 2 1 47 47 H 1.08998 * 109.49904 * 58.64653 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0181 1.3813 0.0000 4 6 1.6928 2.2110 1.0110 5 8 0.9946 1.8130 1.9234 6 6 2.1848 3.6022 1.0113 7 6 3.0761 4.0324 0.0394 8 6 3.5435 5.3415 0.0330 9 6 3.1418 6.2393 0.9773 10 6 2.2400 5.8462 1.9785 11 6 1.7957 6.7342 2.9750 12 6 0.9242 6.2764 3.9172 13 7 0.4800 5.0280 3.9106 14 6 0.8526 4.1468 3.0114 15 6 1.7516 4.5157 2.0017 16 6 2.0396 -0.7207 1.2502 17 6 3.5711 -0.6888 1.2645 18 7 4.0677 -1.2493 0.0004 19 6 4.9753 -2.2747 0.0006 20 1 5.0010 -2.9729 0.8241 21 6 5.8624 -2.4164 -1.0577 22 7 6.0646 -1.4136 -1.8858 23 14 6.7693 -4.0305 -1.3063 24 1 5.7860 -5.1239 -1.5134 25 1 7.6508 -3.9247 -2.4967 26 1 7.5924 -4.3258 -0.1061 27 6 3.5715 -0.6890 -1.2640 28 6 2.0399 -0.7209 -1.2500 29 1 -0.3633 0.5139 -0.8901 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8899 32 1 2.5754 1.6988 -0.7278 33 1 3.4107 3.3424 -0.7211 34 1 4.2373 5.6531 -0.7338 35 1 3.5171 7.2517 0.9549 36 1 2.1419 7.7570 2.9956 37 1 0.5823 6.9513 4.6880 38 1 0.4663 3.1388 3.0495 39 1 1.6569 -0.2206 2.1399 40 1 1.6974 -1.7556 1.2384 41 1 3.9412 -1.2848 2.0987 42 1 3.9163 0.3398 1.3688 43 1 6.6848 -1.5125 -2.6250 44 1 3.9417 -1.2851 -2.0980 45 1 3.9145 0.3401 -1.3697 46 1 1.6976 -1.7557 -1.2382 47 1 1.6570 -0.2212 -2.1398 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001045606669.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:55:05 Heat of formation + Delta-G solvation = 31.765081 kcal Electronic energy + Delta-G solvation = -29981.200743 eV Core-core repulsion = 26128.810409 eV Total energy + Delta-G solvation = -3852.390334 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -42.19274 -41.09847 -38.96029 -38.14261 -36.15864 -34.20712 -33.58080 -32.49986 -32.16062 -31.60226 -30.36436 -29.06600 -25.99732 -25.68936 -24.54785 -24.40804 -23.94982 -22.67039 -21.75314 -20.30725 -19.15432 -18.85304 -18.51574 -17.60743 -17.20936 -16.82856 -16.48766 -16.27042 -15.88811 -15.68103 -15.45492 -15.25795 -15.09875 -14.79852 -14.71184 -14.48939 -14.44751 -14.04904 -13.68994 -13.29316 -13.18026 -13.04149 -13.01644 -12.95654 -12.81666 -12.61703 -12.52037 -12.47508 -12.20897 -11.98885 -11.76473 -11.33275 -11.31832 -11.14425 -10.61718 -10.51830 -10.28899 -10.16649 -10.01696 -9.07670 -8.64311 -7.87010 -5.31193 -0.89523 -0.11673 0.61076 1.47943 1.49288 1.56038 1.75578 2.12648 2.26707 2.51918 3.10223 3.27830 3.47111 3.55080 3.70725 3.71146 3.76759 3.84255 3.91997 3.96924 4.03538 4.13647 4.20266 4.40506 4.48040 4.59088 4.64050 4.70658 4.75211 4.79301 4.81208 4.89327 4.91934 4.92502 4.98382 5.08307 5.17769 5.20233 5.23112 5.30331 5.34390 5.38337 5.49301 5.63841 5.65804 5.69229 5.76820 5.81199 6.40517 6.57776 7.02373 7.17302 7.23098 7.86802 8.38884 9.18568 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.016940 B = 0.003134 C = 0.002907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1652.448896 B = 8931.766997 C = 9628.411898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.188 3.812 3 N -0.697 5.697 4 C 0.560 3.440 5 O -0.556 6.556 6 C -0.128 4.128 7 C -0.069 4.069 8 C -0.109 4.109 9 C -0.074 4.074 10 C -0.051 4.051 11 C -0.144 4.144 12 C 0.053 3.947 13 N -0.514 5.514 14 C 0.117 3.883 15 C -0.094 4.094 16 C -0.132 4.132 17 C 0.153 3.847 18 N -0.605 5.605 19 C -0.267 4.267 20 H 0.058 0.942 21 C -0.042 4.042 22 N -0.927 5.927 23 Si 0.962 3.038 24 H -0.280 1.280 25 H -0.291 1.291 26 H -0.281 1.281 27 C 0.179 3.821 28 C -0.132 4.132 29 H 0.064 0.936 30 H 0.070 0.930 31 H 0.063 0.937 32 H 0.405 0.595 33 H 0.142 0.858 34 H 0.168 0.832 35 H 0.175 0.825 36 H 0.179 0.821 37 H 0.179 0.821 38 H 0.181 0.819 39 H 0.072 0.928 40 H 0.063 0.937 41 H 0.038 0.962 42 H 0.005 0.995 43 H 0.251 0.749 44 H 0.057 0.943 45 H 0.009 0.991 46 H 0.069 0.931 47 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.562 17.851 1.575 19.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.102 3.898 3 N -0.347 5.347 4 C 0.349 3.651 5 O -0.438 6.438 6 C -0.133 4.133 7 C -0.088 4.088 8 C -0.128 4.128 9 C -0.092 4.092 10 C -0.057 4.057 11 C -0.163 4.163 12 C -0.091 4.091 13 N -0.222 5.222 14 C -0.052 4.052 15 C -0.096 4.096 16 C -0.171 4.171 17 C 0.028 3.972 18 N -0.329 5.329 19 C -0.397 4.397 20 H 0.075 0.925 21 C -0.238 4.238 22 N -0.573 5.573 23 Si 0.791 3.209 24 H -0.206 1.206 25 H -0.217 1.217 26 H -0.207 1.207 27 C 0.053 3.947 28 C -0.172 4.172 29 H 0.083 0.917 30 H 0.089 0.911 31 H 0.082 0.918 32 H 0.242 0.758 33 H 0.159 0.841 34 H 0.185 0.815 35 H 0.192 0.808 36 H 0.196 0.804 37 H 0.196 0.804 38 H 0.197 0.803 39 H 0.091 0.909 40 H 0.082 0.918 41 H 0.057 0.943 42 H 0.023 0.977 43 H 0.060 0.940 44 H 0.076 0.924 45 H 0.027 0.973 46 H 0.088 0.912 47 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -9.523 17.417 2.776 20.044 hybrid contribution 1.613 -0.814 -1.018 2.074 sum -7.910 16.604 1.758 18.475 Atomic orbital electron populations 1.22125 0.93316 1.02787 1.02686 1.20230 0.94005 0.79929 0.95618 1.46021 1.52389 1.11717 1.24609 1.18281 0.79742 0.85280 0.81844 1.90480 1.39962 1.77006 1.36356 1.19896 1.01919 0.93111 0.98354 1.21796 0.93246 0.97675 0.96061 1.21323 0.99735 0.91920 0.99854 1.21609 0.93999 1.01762 0.91800 1.18556 0.97503 0.92298 0.97306 1.22301 0.98219 1.01660 0.94110 1.22818 0.95133 0.92138 0.98967 1.67588 1.25163 1.04105 1.25391 1.24341 0.92150 1.00235 0.88467 1.18973 0.99310 0.94457 0.96901 1.22250 0.96416 1.00033 0.98444 1.20828 0.92876 0.95002 0.88537 1.44238 1.48277 1.39494 1.00843 1.19405 1.10119 1.03519 1.06679 0.92471 1.25666 0.98092 1.00132 0.99882 1.70116 1.38175 1.30443 1.18529 0.85427 0.78145 0.80400 0.76943 1.20567 1.21704 1.20723 1.20598 0.89557 0.95699 0.88807 1.22350 0.97956 1.00572 0.96285 0.91705 0.91111 0.91848 0.75770 0.84071 0.81472 0.80775 0.80362 0.80426 0.80315 0.90912 0.91820 0.94289 0.97667 0.93980 0.92416 0.97259 0.91219 0.89847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.20 8.40 71.98 0.60 -3.59 16 2 C 0.19 5.97 0.66 3.63 0.00 5.97 16 3 N -0.70 -20.81 4.05 -425.90 -1.73 -22.54 16 4 C 0.56 17.51 7.15 86.70 0.62 18.13 16 5 O -0.56 -19.67 9.69 -4.01 -0.04 -19.70 16 6 C -0.13 -3.51 5.90 -19.89 -0.12 -3.63 16 7 C -0.07 -1.48 9.51 22.57 0.21 -1.27 16 8 C -0.11 -1.73 9.93 22.01 0.22 -1.51 16 9 C -0.07 -1.10 9.79 22.35 0.22 -0.88 16 10 C -0.05 -1.09 5.75 -21.30 -0.12 -1.21 16 11 C -0.14 -2.46 9.88 22.41 0.22 -2.24 16 12 C 0.05 1.11 11.07 84.13 0.93 2.04 16 13 N -0.51 -14.91 10.30 -195.72 -2.02 -16.92 16 14 C 0.12 3.64 10.49 85.23 0.89 4.53 16 15 C -0.09 -2.61 5.76 -21.14 -0.12 -2.73 16 16 C -0.13 -4.84 4.67 30.67 0.14 -4.70 16 17 C 0.15 6.68 6.25 86.36 0.54 7.22 16 18 N -0.60 -29.60 2.99 -699.09 -2.09 -31.69 16 19 C -0.27 -14.57 9.58 84.03 0.81 -13.76 16 20 H 0.06 3.12 7.88 -2.91 -0.02 3.10 16 21 C -0.04 -2.26 4.92 84.86 0.42 -1.84 16 22 N -0.93 -52.06 11.19 21.65 0.24 -51.82 16 23 Si 0.96 44.06 29.59 68.60 2.03 46.09 16 24 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 25 H -0.29 -13.25 7.11 99.48 0.71 -12.54 16 26 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 27 C 0.18 7.84 5.03 86.37 0.43 8.27 16 28 C -0.13 -4.46 4.96 30.68 0.15 -4.30 16 29 H 0.06 1.59 8.14 -2.38 -0.02 1.58 16 30 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 31 H 0.06 1.94 6.16 -2.39 -0.01 1.93 16 32 H 0.40 11.13 5.34 -92.71 -0.49 10.63 16 33 H 0.14 2.77 6.42 -2.91 -0.02 2.75 16 34 H 0.17 1.55 8.06 -2.91 -0.02 1.53 16 35 H 0.17 1.17 8.06 -2.91 -0.02 1.15 16 36 H 0.18 1.46 8.06 -2.91 -0.02 1.44 16 37 H 0.18 2.51 8.06 -2.91 -0.02 2.49 16 38 H 0.18 6.15 4.98 -2.93 -0.01 6.14 16 39 H 0.07 2.73 6.20 -2.39 -0.01 2.72 16 40 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 41 H 0.04 1.74 7.93 -2.39 -0.02 1.72 16 42 H 0.01 0.24 7.74 -2.39 -0.02 0.22 16 43 H 0.25 13.70 8.31 -92.71 -0.77 12.92 16 44 H 0.06 2.91 6.06 -2.39 -0.01 2.90 16 45 H 0.01 0.41 6.94 -2.39 -0.02 0.40 16 46 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 47 H 0.08 2.35 8.14 -2.39 -0.02 2.33 16 Total: -1.00 -68.90 365.73 2.97 -65.94 By element: Atomic # 1 Polarization: 25.63 SS G_CDS: 0.51 Total: 26.14 kcal Atomic # 6 Polarization: -1.56 SS G_CDS: 6.06 Total: 4.50 kcal Atomic # 7 Polarization: -117.37 SS G_CDS: -5.59 Total: -122.97 kcal Atomic # 8 Polarization: -19.67 SS G_CDS: -0.04 Total: -19.70 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 2.03 Total: 46.09 kcal Total: -68.90 2.97 -65.94 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045606669.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.702 kcal (2) G-P(sol) polarization free energy of solvation -68.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.937 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds