Wall clock time and date at job start Tue Mar 31 2020 22:54:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 N 1.46500 * 109.46028 * 2 1 4 4 C 1.34785 * 119.99649 * 60.00449 * 3 2 1 5 5 O 1.21540 * 119.99894 * 359.97438 * 4 3 2 6 6 C 1.47890 * 119.99666 * 179.97438 * 4 3 2 7 7 C 1.40596 * 119.72899 * 0.02562 * 6 4 3 8 8 C 1.35852 * 120.94979 * 180.02562 * 7 6 4 9 9 C 1.40493 * 119.87802 * 0.02562 * 8 7 6 10 10 C 1.40491 * 121.83475 * 179.97438 * 9 8 7 11 11 N 1.31212 * 119.93764 * 180.02562 * 10 9 8 12 12 C 1.32566 * 122.80326 * 359.97438 * 11 10 9 13 13 C 1.36218 * 121.84461 * 0.02562 * 12 11 10 14 14 C 1.40753 * 118.67943 * 359.66291 * 13 12 11 15 15 C 1.38527 * 119.72722 * 179.97438 * 6 4 3 16 16 C 1.53035 * 109.46112 * 119.97705 * 2 1 3 17 17 C 1.53163 * 109.32827 * 181.38490 * 16 2 1 18 18 N 1.46924 * 108.76609 * 305.35302 * 17 16 2 19 19 C 1.36937 * 120.63335 * 233.62933 * 18 17 16 20 20 H 1.07991 * 119.99992 * 152.60247 * 19 18 17 21 21 C 1.38814 * 119.99582 * 332.60722 * 19 18 17 22 22 N 1.31622 * 120.00214 * 159.36217 * 21 19 18 23 23 Si 1.86802 * 120.00193 * 339.35592 * 21 19 18 24 24 H 1.48502 * 109.47074 * 92.90504 * 23 21 19 25 25 H 1.48500 * 109.47084 * 212.90552 * 23 21 19 26 26 H 1.48497 * 109.46968 * 332.90609 * 23 21 19 27 27 C 1.46927 * 118.73871 * 53.61445 * 18 17 16 28 28 C 1.53044 * 109.45662 * 240.03007 * 2 1 3 29 29 H 1.09002 * 109.46621 * 59.99595 * 1 2 3 30 30 H 1.08992 * 109.47283 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.46775 * 299.99892 * 1 2 3 32 32 H 0.97001 * 120.00581 * 240.00160 * 3 2 1 33 33 H 1.07996 * 119.52499 * 0.02759 * 7 6 4 34 34 H 1.07999 * 120.06055 * 179.97438 * 8 7 6 35 35 H 1.07997 * 120.03243 * 359.97438 * 10 9 8 36 36 H 1.07995 * 119.07235 * 180.02562 * 12 11 10 37 37 H 1.08005 * 120.65614 * 179.97438 * 13 12 11 38 38 H 1.08003 * 120.36663 * 0.02562 * 15 6 4 39 39 H 1.09004 * 109.49928 * 301.32540 * 16 2 1 40 40 H 1.09006 * 109.49956 * 61.41595 * 16 2 1 41 41 H 1.09004 * 109.59304 * 185.56912 * 17 16 2 42 42 H 1.08998 * 109.70715 * 65.21219 * 17 16 2 43 43 H 0.96996 * 120.00741 * 179.97438 * 22 21 19 44 44 H 1.09004 * 109.58839 * 186.60311 * 27 18 17 45 45 H 1.09001 * 109.70816 * 66.24274 * 27 18 17 46 46 H 1.08996 * 109.49764 * 298.57986 * 28 2 1 47 47 H 1.09004 * 109.49831 * 58.64853 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 1.6924 2.2111 1.0110 5 8 0.9934 1.8135 1.9223 6 6 2.1856 3.6053 1.0113 7 6 2.9934 4.0594 -0.0461 8 6 3.4603 5.3349 -0.0707 9 6 3.1364 6.2190 0.9720 10 6 3.5972 7.5460 0.9885 11 7 3.2722 8.3398 1.9815 12 6 2.5132 7.9480 2.9953 13 6 2.0161 6.6822 3.0737 14 6 2.3160 5.7736 2.0415 15 6 1.8469 4.4535 2.0528 16 6 2.0399 -0.7210 1.2499 17 6 3.5712 -0.6890 1.2644 18 7 4.0676 -1.2494 0.0002 19 6 4.9753 -2.2747 0.0002 20 1 5.0111 -2.9641 -0.8302 21 6 5.8493 -2.4278 1.0677 22 7 6.4253 -3.5912 1.2851 23 14 6.2081 -0.9828 2.1958 24 1 5.2788 -1.0160 3.3536 25 1 7.6084 -1.0705 2.6824 26 1 6.0224 0.2868 1.4482 27 6 3.5714 -0.6889 -1.2641 28 6 2.0399 -0.7209 -1.2501 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 2.5757 1.6988 -0.7275 33 1 3.2462 3.3845 -0.8504 34 1 4.0802 5.6684 -0.8898 35 1 4.2191 7.9123 0.1851 36 1 2.2826 8.6522 3.7809 37 1 1.3999 6.3834 3.9088 38 1 1.2259 4.1019 2.8634 39 1 1.6575 -0.2210 2.1398 40 1 1.6976 -1.7558 1.2381 41 1 3.9413 -1.2850 2.0986 42 1 3.9164 0.3396 1.3688 43 1 7.0363 -3.6982 2.0308 44 1 3.9417 -1.2850 -2.0983 45 1 3.9145 0.3403 -1.3697 46 1 1.6976 -1.7556 -1.2383 47 1 1.6570 -0.2210 -2.1399 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001045610938.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:54:55 Heat of formation + Delta-G solvation = 48.323833 kcal Electronic energy + Delta-G solvation = -29720.184026 eV Core-core repulsion = 25868.511734 eV Total energy + Delta-G solvation = -3851.672293 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.22892 -40.28073 -38.07194 -36.97513 -34.70112 -33.34356 -32.56075 -31.61261 -30.60586 -30.49450 -29.93187 -27.76042 -25.30069 -24.09351 -23.95156 -22.86825 -22.67048 -21.65220 -20.83440 -19.08419 -18.54834 -17.89504 -17.05286 -16.69039 -16.40712 -15.33951 -15.25952 -15.19652 -14.96404 -14.45844 -14.33178 -14.15319 -13.96188 -13.91138 -13.71239 -13.56059 -13.30097 -13.02415 -12.69357 -12.46660 -12.26567 -12.11360 -11.97866 -11.78586 -11.42108 -11.41055 -11.30788 -10.85688 -10.59959 -10.56858 -10.30691 -10.07543 -9.86990 -9.78054 -9.54305 -9.41328 -9.35413 -8.91225 -8.59237 -8.41590 -6.99875 -5.97339 -3.33208 -0.07782 0.38743 1.54252 2.32667 3.14910 3.26765 3.32877 3.47178 3.49092 3.80067 4.06597 4.18818 4.36169 4.43491 4.51412 4.55813 4.69202 4.83553 4.88136 4.93887 5.06236 5.19125 5.25795 5.27367 5.35482 5.39950 5.42576 5.60193 5.70172 5.72869 5.81565 5.93696 5.94858 5.97397 5.98770 6.05625 6.12316 6.26495 6.27263 6.39941 6.46126 6.49050 6.51597 6.60349 6.67021 6.77958 6.93921 7.61753 7.62057 7.93839 8.26569 8.30203 8.91504 9.70005 10.07546 11.18575 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.013327 B = 0.003438 C = 0.003073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2100.560684 B = 8141.760967 C = 9109.811923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.183 3.817 3 N -0.706 5.706 4 C 0.556 3.444 5 O -0.531 6.531 6 C -0.108 4.108 7 C -0.092 4.092 8 C -0.090 4.090 9 C -0.099 4.099 10 C 0.144 3.856 11 N -0.485 5.485 12 C 0.071 3.929 13 C -0.144 4.144 14 C -0.034 4.034 15 C -0.046 4.046 16 C -0.144 4.144 17 C 0.132 3.868 18 N -0.604 5.604 19 C -0.261 4.261 20 H 0.086 0.914 21 C 0.025 3.975 22 N -0.907 5.907 23 Si 0.882 3.118 24 H -0.289 1.289 25 H -0.304 1.304 26 H -0.273 1.273 27 C 0.149 3.851 28 C -0.139 4.139 29 H 0.049 0.951 30 H 0.063 0.937 31 H 0.074 0.926 32 H 0.398 0.602 33 H 0.132 0.868 34 H 0.140 0.860 35 H 0.165 0.835 36 H 0.154 0.846 37 H 0.141 0.859 38 H 0.147 0.853 39 H 0.076 0.924 40 H 0.072 0.928 41 H 0.070 0.930 42 H 0.021 0.979 43 H 0.263 0.737 44 H 0.066 0.934 45 H 0.016 0.984 46 H 0.081 0.919 47 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.699 20.105 -3.385 23.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.098 3.902 3 N -0.357 5.357 4 C 0.343 3.657 5 O -0.409 6.409 6 C -0.112 4.112 7 C -0.111 4.111 8 C -0.110 4.110 9 C -0.101 4.101 10 C -0.028 4.028 11 N -0.193 5.193 12 C -0.072 4.072 13 C -0.163 4.163 14 C -0.039 4.039 15 C -0.065 4.065 16 C -0.184 4.184 17 C 0.006 3.994 18 N -0.328 5.328 19 C -0.389 4.389 20 H 0.103 0.897 21 C -0.174 4.174 22 N -0.550 5.550 23 Si 0.713 3.287 24 H -0.217 1.217 25 H -0.232 1.232 26 H -0.198 1.198 27 C 0.022 3.978 28 C -0.178 4.178 29 H 0.068 0.932 30 H 0.082 0.918 31 H 0.093 0.907 32 H 0.234 0.766 33 H 0.150 0.850 34 H 0.158 0.842 35 H 0.183 0.817 36 H 0.172 0.828 37 H 0.159 0.841 38 H 0.165 0.835 39 H 0.094 0.906 40 H 0.090 0.910 41 H 0.088 0.912 42 H 0.039 0.961 43 H 0.072 0.928 44 H 0.085 0.915 45 H 0.034 0.966 46 H 0.100 0.900 47 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -10.833 20.551 -2.524 23.368 hybrid contribution 0.347 -0.043 0.399 0.531 sum -10.485 20.509 -2.125 23.132 Atomic orbital electron populations 1.22216 0.94766 1.02293 1.02557 1.20326 0.93142 0.79627 0.97065 1.46102 1.52741 1.12280 1.24616 1.18138 0.80437 0.84792 0.82374 1.90707 1.37980 1.76639 1.35602 1.20174 1.00062 0.94615 0.96373 1.21029 0.96126 0.96311 0.97622 1.20886 0.99395 0.93007 0.97734 1.19164 0.98890 0.96194 0.95852 1.23259 0.95381 0.88419 0.95755 1.67395 1.12217 1.37942 1.01754 1.22196 0.94260 0.94686 0.96072 1.22003 1.01097 0.94461 0.98781 1.18150 0.96896 0.94263 0.94619 1.21434 0.96675 0.90919 0.97465 1.22411 0.98422 1.00306 0.97255 1.21241 0.91672 0.96533 0.89932 1.44351 1.48899 1.40263 0.99297 1.18906 1.09771 1.02706 1.07513 0.89664 1.25256 0.97394 0.96564 0.98157 1.69830 1.32595 1.21945 1.30665 0.86970 0.76197 0.84774 0.80771 1.21687 1.23183 1.19780 1.20882 0.90663 0.96235 0.89971 1.22351 0.99262 1.01083 0.95143 0.93177 0.91839 0.90694 0.76608 0.85031 0.84225 0.81748 0.82838 0.84108 0.83537 0.90585 0.90959 0.91185 0.96072 0.92754 0.91530 0.96580 0.90023 0.92074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.17 8.40 37.16 0.31 -1.86 16 2 C 0.18 2.78 0.66 -131.77 -0.09 2.69 16 3 N -0.71 -9.83 4.05 -48.48 -0.20 -10.03 16 4 C 0.56 8.24 7.19 -12.30 -0.09 8.15 16 5 O -0.53 -9.20 12.52 5.33 0.07 -9.13 16 6 C -0.11 -1.35 5.87 -104.95 -0.62 -1.97 16 7 C -0.09 -0.94 9.44 -39.55 -0.37 -1.32 16 8 C -0.09 -0.80 9.77 -39.59 -0.39 -1.19 16 9 C -0.10 -1.00 5.75 -106.78 -0.61 -1.61 16 10 C 0.14 1.31 11.04 -16.97 -0.19 1.13 16 11 N -0.49 -5.08 10.29 -13.15 -0.14 -5.22 16 12 C 0.07 0.65 11.07 -17.96 -0.20 0.45 16 13 C -0.14 -1.33 9.88 -39.36 -0.39 -1.72 16 14 C -0.03 -0.37 5.74 -106.83 -0.61 -0.99 16 15 C -0.05 -0.55 9.38 -38.78 -0.36 -0.91 16 16 C -0.14 -2.69 4.66 -26.63 -0.12 -2.82 16 17 C 0.13 2.92 3.95 -3.73 -0.01 2.90 16 18 N -0.60 -13.85 2.77 -172.33 -0.48 -14.32 16 19 C -0.26 -7.15 10.04 -15.06 -0.15 -7.30 16 20 H 0.09 2.48 8.05 -52.49 -0.42 2.05 16 21 C 0.03 0.73 5.23 -17.43 -0.09 0.64 16 22 N -0.91 -27.80 13.97 55.49 0.78 -27.03 16 23 Si 0.88 22.81 24.34 -169.99 -4.14 18.67 16 24 H -0.29 -7.40 6.62 56.52 0.37 -7.03 16 25 H -0.30 -7.97 7.11 56.52 0.40 -7.56 16 26 H -0.27 -6.90 6.63 56.52 0.38 -6.52 16 27 C 0.15 2.65 6.24 -3.71 -0.02 2.63 16 28 C -0.14 -2.03 4.96 -26.61 -0.13 -2.16 16 29 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.07 1.13 6.16 -51.93 -0.32 0.81 16 32 H 0.40 4.72 5.25 -40.82 -0.21 4.51 16 33 H 0.13 1.11 6.34 -52.49 -0.33 0.77 16 34 H 0.14 0.81 8.06 -52.49 -0.42 0.38 16 35 H 0.17 0.98 8.06 -52.49 -0.42 0.56 16 36 H 0.15 1.00 8.06 -52.49 -0.42 0.57 16 37 H 0.14 0.97 8.06 -52.48 -0.42 0.55 16 38 H 0.15 1.69 7.62 -52.48 -0.40 1.29 16 39 H 0.08 1.46 6.20 -51.93 -0.32 1.14 16 40 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 41 H 0.07 1.75 4.50 -51.93 -0.23 1.52 16 42 H 0.02 0.48 6.67 -51.93 -0.35 0.13 16 43 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 44 H 0.07 1.19 7.93 -51.93 -0.41 0.77 16 45 H 0.02 0.27 6.94 -51.93 -0.36 -0.09 16 46 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 47 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 LS Contribution 364.48 15.07 5.49 5.49 Total: -1.00 -33.86 364.48 -9.11 -42.97 By element: Atomic # 1 Polarization: 10.20 SS G_CDS: -6.36 Total: 3.84 kcal Atomic # 6 Polarization: -1.11 SS G_CDS: -4.14 Total: -5.25 kcal Atomic # 7 Polarization: -56.56 SS G_CDS: -0.03 Total: -56.59 kcal Atomic # 8 Polarization: -9.20 SS G_CDS: 0.07 Total: -9.13 kcal Atomic # 14 Polarization: 22.81 SS G_CDS: -4.14 Total: 18.67 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -33.86 -9.11 -42.97 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045610938.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.295 kcal (2) G-P(sol) polarization free energy of solvation -33.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.971 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds