Wall clock time and date at job start Tue Mar 31 2020 22:55:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46499 * 109.46099 * 2 1 4 4 C 1.34776 * 120.00281 * 60.02281 * 3 2 1 5 5 O 1.21603 * 119.99920 * 359.97438 * 4 3 2 6 6 C 1.47439 * 120.00192 * 180.02562 * 4 3 2 7 7 C 1.38949 * 121.17022 * 0.02562 * 6 4 3 8 8 N 1.32201 * 121.31893 * 180.27420 * 7 6 4 9 9 C 1.31193 * 123.69150 * 359.45710 * 8 7 6 10 10 C 1.40381 * 120.91916 * 0.54023 * 9 8 7 11 11 C 1.40389 * 122.14211 * 179.72591 * 10 9 8 12 12 C 1.36227 * 119.48956 * 180.02562 * 11 10 9 13 13 C 1.39294 * 121.10454 * 0.02562 * 12 11 10 14 14 C 1.36444 * 120.94620 * 359.97438 * 13 12 11 15 15 C 1.39694 * 119.43794 * 359.97438 * 14 13 12 16 16 C 1.53039 * 109.44672 * 119.96212 * 2 1 3 17 17 C 1.53188 * 109.31376 * 181.37867 * 16 2 1 18 18 N 1.46924 * 108.77518 * 305.36727 * 17 16 2 19 19 C 1.36944 * 120.63027 * 233.62789 * 18 17 16 20 20 H 1.07999 * 119.99769 * 152.60407 * 19 18 17 21 21 C 1.38811 * 119.99813 * 332.60306 * 19 18 17 22 22 N 1.31616 * 119.99744 * 159.36147 * 21 19 18 23 23 Si 1.86797 * 120.00123 * 339.35738 * 21 19 18 24 24 H 1.48500 * 109.46822 * 92.90677 * 23 21 19 25 25 H 1.48502 * 109.47271 * 212.90280 * 23 21 19 26 26 H 1.48498 * 109.47234 * 332.90374 * 23 21 19 27 27 C 1.46925 * 118.74026 * 53.60957 * 18 17 16 28 28 C 1.53034 * 109.46226 * 240.02443 * 2 1 3 29 29 H 1.08998 * 109.47035 * 60.00088 * 1 2 3 30 30 H 1.08994 * 109.47404 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47289 * 300.00411 * 1 2 3 32 32 H 0.97000 * 120.00062 * 240.02734 * 3 2 1 33 33 H 1.07997 * 119.34391 * 359.97438 * 7 6 4 34 34 H 1.08004 * 119.54155 * 180.28446 * 9 8 7 35 35 H 1.08004 * 120.25976 * 0.02562 * 11 10 9 36 36 H 1.08001 * 119.45261 * 179.97438 * 12 11 10 37 37 H 1.08000 * 119.53087 * 179.97438 * 13 12 11 38 38 H 1.08003 * 120.28206 * 180.02562 * 14 13 12 39 39 H 1.08997 * 109.50126 * 301.33053 * 16 2 1 40 40 H 1.08999 * 109.49620 * 61.42753 * 16 2 1 41 41 H 1.09002 * 109.59007 * 185.58047 * 17 16 2 42 42 H 1.08998 * 109.70590 * 65.22309 * 17 16 2 43 43 H 0.97001 * 120.00056 * 179.97438 * 22 21 19 44 44 H 1.09002 * 109.58890 * 186.60824 * 27 18 17 45 45 H 1.08996 * 109.70567 * 66.24983 * 27 18 17 46 46 H 1.09006 * 109.49572 * 298.58309 * 28 2 1 47 47 H 1.09003 * 109.49767 * 58.64281 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0181 1.3813 0.0000 4 6 1.6927 2.2110 1.0110 5 8 0.9937 1.8132 1.9230 6 6 2.1835 3.6013 1.0107 7 6 2.9823 4.0818 -0.0197 8 7 3.4284 5.3263 -0.0202 9 6 3.1551 6.1978 0.9215 10 6 2.3583 5.8445 2.0220 11 6 2.0544 6.7545 3.0469 12 6 1.2762 6.3537 4.0907 13 6 0.7768 5.0551 4.1588 14 6 1.0525 4.1451 3.1802 15 6 1.8467 4.5233 2.0950 16 6 2.0395 -0.7207 1.2502 17 6 3.5710 -0.6889 1.2646 18 7 4.0675 -1.2493 0.0005 19 6 4.9753 -2.2747 0.0007 20 1 5.0112 -2.9642 -0.8297 21 6 5.8492 -2.4277 1.0683 22 7 6.4251 -3.5911 1.2858 23 14 6.2080 -0.9826 2.1962 24 1 5.2786 -1.0157 3.3540 25 1 7.6082 -1.0702 2.6829 26 1 6.0223 0.2869 1.4485 27 6 3.5714 -0.6890 -1.2639 28 6 2.0399 -0.7209 -1.2499 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 2.5754 1.6988 -0.7277 33 1 3.2481 3.4241 -0.8340 34 1 3.5519 7.1998 0.8513 35 1 2.4347 7.7647 3.0083 36 1 1.0431 7.0541 4.8790 37 1 0.1626 4.7644 4.9982 38 1 0.6593 3.1412 3.2436 39 1 1.6569 -0.2206 2.1399 40 1 1.6972 -1.7555 1.2385 41 1 3.9411 -1.2848 2.0989 42 1 3.9162 0.3397 1.3689 43 1 7.0360 -3.6979 2.0315 44 1 3.9417 -1.2852 -2.0980 45 1 3.9146 0.3401 -1.3696 46 1 1.6976 -1.7558 -1.2381 47 1 1.6570 -0.2212 -2.1398 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001045646981.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:55:14 Heat of formation + Delta-G solvation = 31.624099 kcal Electronic energy + Delta-G solvation = -30210.666797 eV Core-core repulsion = 26358.270349 eV Total energy + Delta-G solvation = -3852.396448 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -42.10837 -41.09940 -39.00642 -38.36474 -36.29660 -34.22467 -33.73295 -32.63115 -32.17863 -32.04213 -30.41742 -29.31198 -26.16624 -25.70359 -24.53304 -24.46865 -23.93677 -22.87613 -21.93067 -20.46057 -19.09068 -18.99835 -18.56266 -18.28821 -17.29392 -16.89315 -16.53484 -16.22881 -15.96315 -15.89244 -15.56977 -15.35204 -15.27972 -14.90185 -14.80430 -14.61106 -14.42530 -14.29811 -13.77041 -13.67956 -13.56685 -13.19489 -13.17009 -12.91785 -12.89261 -12.72413 -12.62448 -12.38737 -12.19316 -12.07992 -11.69360 -11.48289 -11.36212 -11.10098 -10.86991 -10.80007 -10.28849 -10.13496 -10.08163 -9.15408 -8.95299 -8.21814 -5.51110 -0.98292 -0.15242 0.65675 1.21711 1.30765 1.38413 1.74477 2.04618 2.20417 2.34534 3.00451 3.04322 3.19735 3.31640 3.48400 3.59493 3.68992 3.74940 3.86048 3.88365 4.00406 4.02981 4.25348 4.29267 4.30444 4.40255 4.46613 4.56190 4.59973 4.65443 4.74959 4.78057 4.80918 4.88342 4.95881 5.01682 5.06299 5.09953 5.13476 5.16929 5.31440 5.37249 5.38934 5.48910 5.53147 5.64524 5.84051 5.89278 6.09864 6.50272 6.79756 6.88049 7.16828 7.58923 8.00690 8.98240 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.012987 B = 0.003842 C = 0.003557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2155.514911 B = 7287.066634 C = 7869.415401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.188 3.812 3 N -0.702 5.702 4 C 0.566 3.434 5 O -0.555 6.555 6 C -0.203 4.203 7 C 0.124 3.876 8 N -0.520 5.520 9 C 0.187 3.813 10 C -0.140 4.140 11 C -0.075 4.075 12 C -0.124 4.124 13 C -0.090 4.090 14 C -0.147 4.147 15 C -0.009 4.009 16 C -0.136 4.136 17 C 0.136 3.864 18 N -0.616 5.616 19 C -0.241 4.241 20 H 0.063 0.937 21 C -0.028 4.028 22 N -0.953 5.953 23 Si 0.936 3.064 24 H -0.291 1.291 25 H -0.308 1.308 26 H -0.267 1.267 27 C 0.140 3.860 28 C -0.126 4.126 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.058 0.942 32 H 0.406 0.594 33 H 0.169 0.831 34 H 0.208 0.792 35 H 0.176 0.824 36 H 0.162 0.838 37 H 0.145 0.855 38 H 0.141 0.859 39 H 0.069 0.931 40 H 0.065 0.935 41 H 0.037 0.963 42 H 0.017 0.983 43 H 0.261 0.739 44 H 0.066 0.934 45 H 0.038 0.962 46 H 0.077 0.923 47 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.855 24.582 -0.378 28.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.102 3.898 3 N -0.354 5.354 4 C 0.354 3.646 5 O -0.435 6.435 6 C -0.208 4.208 7 C -0.020 4.020 8 N -0.228 5.228 9 C 0.016 3.984 10 C -0.142 4.142 11 C -0.095 4.095 12 C -0.142 4.142 13 C -0.110 4.110 14 C -0.165 4.165 15 C -0.015 4.015 16 C -0.175 4.175 17 C 0.011 3.989 18 N -0.341 5.341 19 C -0.370 4.370 20 H 0.081 0.919 21 C -0.223 4.223 22 N -0.600 5.600 23 Si 0.767 3.233 24 H -0.219 1.219 25 H -0.237 1.237 26 H -0.192 1.192 27 C 0.015 3.985 28 C -0.165 4.165 29 H 0.090 0.910 30 H 0.090 0.910 31 H 0.077 0.923 32 H 0.244 0.756 33 H 0.186 0.814 34 H 0.225 0.775 35 H 0.194 0.806 36 H 0.180 0.820 37 H 0.163 0.837 38 H 0.159 0.841 39 H 0.087 0.913 40 H 0.084 0.916 41 H 0.055 0.945 42 H 0.035 0.965 43 H 0.070 0.930 44 H 0.085 0.915 45 H 0.056 0.944 46 H 0.095 0.905 47 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -13.728 24.283 -0.472 27.899 hybrid contribution 0.474 -0.469 1.262 1.427 sum -13.254 23.814 0.790 27.266 Atomic orbital electron populations 1.22102 0.92944 1.02904 1.02852 1.20245 0.94399 0.79714 0.95406 1.46016 1.52922 1.11741 1.24724 1.18002 0.79764 0.84843 0.81951 1.90555 1.39573 1.77128 1.36288 1.21958 1.05341 0.94614 0.98861 1.22980 0.90658 0.92464 0.95921 1.67208 1.23386 1.03294 1.28929 1.24018 0.88721 0.99703 0.85937 1.19338 1.01757 0.93838 0.99256 1.21453 0.96358 1.00050 0.91624 1.21400 0.97191 0.96129 0.99435 1.21520 0.97733 0.93669 0.98035 1.21717 0.98593 1.02272 0.93880 1.19187 0.95792 0.92785 0.93689 1.22285 0.95544 1.00494 0.99221 1.21105 0.94050 0.95220 0.88554 1.44481 1.48348 1.39809 1.01432 1.18944 1.09326 1.02816 1.05937 0.91902 1.25745 0.98298 0.98152 1.00090 1.69934 1.34442 1.23603 1.31995 0.86085 0.75367 0.82525 0.79335 1.21931 1.23713 1.19178 1.21166 0.92940 0.96954 0.87397 1.22236 0.96384 1.01363 0.96524 0.91024 0.91024 0.92267 0.75607 0.81372 0.77516 0.80621 0.81998 0.83685 0.84131 0.91260 0.91593 0.94520 0.96529 0.93020 0.91508 0.94426 0.90479 0.87825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.83 8.40 71.98 0.60 -3.23 16 2 C 0.19 5.51 0.66 3.63 0.00 5.52 16 3 N -0.70 -19.49 4.06 -426.03 -1.73 -21.22 16 4 C 0.57 17.51 7.19 86.67 0.62 18.13 16 5 O -0.55 -19.52 9.95 -4.04 -0.04 -19.56 16 6 C -0.20 -5.69 6.07 -18.60 -0.11 -5.81 16 7 C 0.12 3.04 10.71 84.81 0.91 3.95 16 8 N -0.52 -11.94 10.22 -193.73 -1.98 -13.92 16 9 C 0.19 3.27 11.00 85.31 0.94 4.21 16 10 C -0.14 -2.76 5.74 -21.34 -0.12 -2.88 16 11 C -0.08 -0.96 9.82 22.33 0.22 -0.74 16 12 C -0.12 -1.62 9.94 22.06 0.22 -1.40 16 13 C -0.09 -1.68 9.96 22.10 0.22 -1.46 16 14 C -0.15 -3.84 9.32 22.20 0.21 -3.64 16 15 C -0.01 -0.25 5.91 -19.94 -0.12 -0.37 16 16 C -0.14 -5.12 4.67 30.67 0.14 -4.98 16 17 C 0.14 6.17 3.95 86.36 0.34 6.51 16 18 N -0.62 -28.64 2.77 -699.11 -1.94 -30.58 16 19 C -0.24 -13.60 10.04 84.03 0.84 -12.76 16 20 H 0.06 3.80 8.06 -2.91 -0.02 3.77 16 21 C -0.03 -1.66 5.23 84.86 0.44 -1.22 16 22 N -0.95 -60.85 13.97 21.65 0.30 -60.55 16 23 Si 0.94 49.38 24.34 68.60 1.67 51.05 16 24 H -0.29 -15.27 6.62 99.48 0.66 -14.61 16 25 H -0.31 -16.33 7.11 99.48 0.71 -15.63 16 26 H -0.27 -13.62 6.64 99.48 0.66 -12.96 16 27 C 0.14 4.88 6.24 86.36 0.54 5.42 16 28 C -0.13 -3.44 4.96 30.67 0.15 -3.29 16 29 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 30 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 31 H 0.06 1.74 6.16 -2.39 -0.01 1.73 16 32 H 0.41 9.53 5.37 -92.71 -0.50 9.03 16 33 H 0.17 3.43 6.44 -2.91 -0.02 3.41 16 34 H 0.21 1.63 8.06 -2.91 -0.02 1.61 16 35 H 0.18 0.73 8.06 -2.91 -0.02 0.71 16 36 H 0.16 0.97 8.06 -2.91 -0.02 0.95 16 37 H 0.15 2.04 8.06 -2.91 -0.02 2.02 16 38 H 0.14 4.33 5.24 -2.91 -0.02 4.32 16 39 H 0.07 2.72 6.20 -2.39 -0.01 2.71 16 40 H 0.07 2.54 8.14 -2.39 -0.02 2.52 16 41 H 0.04 1.90 4.50 -2.39 -0.01 1.89 16 42 H 0.02 0.78 6.67 -2.39 -0.02 0.76 16 43 H 0.26 15.93 8.31 -92.71 -0.77 15.15 16 44 H 0.07 2.34 7.93 -2.39 -0.02 2.32 16 45 H 0.04 1.19 6.94 -2.39 -0.02 1.17 16 46 H 0.08 2.23 8.14 -2.38 -0.02 2.22 16 47 H 0.10 2.05 8.14 -2.39 -0.02 2.03 16 Total: -1.00 -77.26 360.22 2.76 -74.51 By element: Atomic # 1 Polarization: 17.88 SS G_CDS: 0.42 Total: 18.30 kcal Atomic # 6 Polarization: -4.08 SS G_CDS: 6.05 Total: 1.97 kcal Atomic # 7 Polarization: -120.92 SS G_CDS: -5.34 Total: -126.27 kcal Atomic # 8 Polarization: -19.52 SS G_CDS: -0.04 Total: -19.56 kcal Atomic # 14 Polarization: 49.38 SS G_CDS: 1.67 Total: 51.05 kcal Total: -77.26 2.76 -74.51 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045646981.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.130 kcal (2) G-P(sol) polarization free energy of solvation -77.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.506 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds