Wall clock time and date at job start Tue Mar 31 2020 22:25:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30824 * 119.22816 * 2 1 4 4 C 1.33796 * 121.72075 * 179.97438 * 3 2 1 5 5 C 1.40535 * 120.82914 * 180.02562 * 4 3 2 6 6 C 1.36128 * 119.81436 * 179.97438 * 5 4 3 7 7 C 1.39344 * 121.09435 * 359.97438 * 6 5 4 8 8 C 1.36133 * 120.83967 * 0.02562 * 7 6 5 9 9 C 1.40556 * 119.61523 * 359.97438 * 8 7 6 10 10 C 1.40500 * 121.21899 * 180.30528 * 9 8 7 11 11 C 1.39047 * 117.95775 * 180.21271 * 10 9 8 12 12 C 1.47755 * 120.26450 * 179.74484 * 11 10 9 13 13 O 1.21572 * 119.99964 * 173.68317 * 12 11 10 14 14 N 1.34772 * 120.00461 * 353.68198 * 12 11 10 15 15 C 1.46498 * 120.00425 * 179.97438 * 14 12 11 16 16 C 1.53008 * 110.91340 * 62.44700 * 15 14 12 17 17 C 1.55441 * 111.01797 * 186.50254 * 15 14 12 18 18 C 1.54322 * 102.96914 * 82.52332 * 17 15 14 19 19 N 1.47018 * 107.26851 * 22.19535 * 18 17 15 20 20 C 1.36935 * 125.64772 * 181.03476 * 19 18 17 21 21 H 1.08006 * 120.00407 * 180.02562 * 20 19 18 22 22 C 1.38814 * 120.00161 * 0.02809 * 20 19 18 23 23 N 1.31618 * 119.99879 * 359.97438 * 22 20 19 24 24 Si 1.86803 * 120.00253 * 180.02562 * 22 20 19 25 25 H 1.48504 * 109.46787 * 359.97438 * 24 22 20 26 26 H 1.48493 * 109.47138 * 119.99729 * 24 22 20 27 27 H 1.48499 * 109.46791 * 240.00095 * 24 22 20 28 28 C 1.47429 * 108.70576 * 1.06018 * 19 18 17 29 29 H 1.09007 * 109.46557 * 263.32824 * 1 2 3 30 30 H 1.08998 * 109.47032 * 23.32831 * 1 2 3 31 31 H 1.08994 * 109.47054 * 143.33088 * 1 2 3 32 32 H 1.07999 * 120.09086 * 0.02562 * 5 4 3 33 33 H 1.08001 * 119.44997 * 179.97438 * 6 5 4 34 34 H 1.08000 * 119.57899 * 179.97438 * 7 6 5 35 35 H 1.08000 * 120.19707 * 180.02562 * 8 7 6 36 36 H 1.07998 * 121.01822 * 359.97438 * 10 9 8 37 37 H 0.97000 * 120.00155 * 0.02562 * 14 12 11 38 38 H 1.08999 * 109.47175 * 297.55425 * 16 15 14 39 39 H 1.09006 * 109.46998 * 57.55497 * 16 15 14 40 40 H 1.09000 * 109.46844 * 177.55045 * 16 15 14 41 41 H 1.09001 * 110.70609 * 324.15231 * 17 15 14 42 42 H 1.08997 * 110.86205 * 200.97499 * 17 15 14 43 43 H 1.08997 * 109.88497 * 262.78047 * 18 17 15 44 44 H 1.08998 * 109.88064 * 141.61155 * 18 17 15 45 45 H 0.96996 * 120.00276 * 179.97438 * 23 22 20 46 46 H 1.09001 * 110.36671 * 94.71069 * 28 19 18 47 47 H 1.09006 * 110.36328 * 216.92433 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1458 1.1417 0.0000 4 6 3.4825 1.1999 0.0005 5 6 4.1495 2.4368 0.0010 6 6 5.5104 2.4719 0.0021 7 6 6.2605 1.2977 0.0032 8 6 5.6512 0.0803 0.0027 9 6 4.2476 0.0061 0.0016 10 6 3.5839 -1.2322 0.0075 11 6 2.1934 -1.2266 0.0015 12 6 1.4436 -2.4997 0.0016 13 8 0.2329 -2.4921 0.1122 14 7 2.1016 -3.6695 -0.1210 15 6 1.3582 -4.9318 -0.1203 16 6 0.3993 -5.0015 -1.3106 17 6 2.3255 -6.1485 -0.1084 18 6 2.6842 -6.2912 1.3858 19 7 1.6130 -5.6420 2.1556 20 6 1.5644 -5.5326 3.5197 21 1 0.7302 -5.0352 3.9923 22 6 2.5872 -6.0610 4.2954 23 7 3.6035 -6.6676 3.7196 24 14 2.5205 -5.9125 6.1563 25 1 1.2830 -5.1929 6.5513 26 1 2.5197 -7.2685 6.7614 27 1 3.7060 -5.1573 6.6353 28 6 0.5996 -5.1288 1.2159 29 1 -0.3633 -0.1194 1.0208 30 1 -0.3633 0.9436 -0.4069 31 1 -0.3633 -0.8242 -0.6137 32 1 3.5841 3.3569 0.0015 33 1 6.0169 3.4258 0.0021 34 1 7.3391 1.3540 0.0036 35 1 6.2429 -0.8233 0.0040 36 1 4.1367 -2.1600 0.0126 37 1 3.0676 -3.6757 -0.2088 38 1 -0.3378 -4.2026 -1.2307 39 1 0.9615 -4.8859 -2.2373 40 1 -0.1088 -5.9659 -1.3118 41 1 3.2162 -5.9385 -0.7005 42 1 1.8251 -7.0458 -0.4723 43 1 3.6358 -5.7993 1.5872 44 1 2.7458 -7.3461 1.6531 45 1 4.3185 -7.0365 4.2615 46 1 -0.2048 -5.8539 1.0922 47 1 0.2012 -4.1779 1.5697 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001046349718.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:25:52 Heat of formation + Delta-G solvation = 51.242751 kcal Electronic energy + Delta-G solvation = -29687.238359 eV Core-core repulsion = 25835.692640 eV Total energy + Delta-G solvation = -3851.545719 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.15307 -39.75730 -37.77671 -36.78563 -34.28535 -33.63158 -31.95549 -31.86437 -30.50702 -29.64454 -28.68991 -27.77172 -25.69777 -24.88472 -23.64949 -22.70173 -22.25121 -21.36602 -20.23663 -19.15264 -18.43730 -17.59618 -16.88966 -16.68191 -15.70500 -15.49990 -15.21462 -14.75675 -14.67618 -14.58706 -14.24945 -13.87487 -13.70482 -13.54241 -13.30614 -12.98507 -12.95988 -12.76195 -12.26880 -12.03415 -11.96147 -11.86576 -11.76488 -11.64347 -11.60839 -11.41704 -10.92103 -10.89435 -10.63296 -10.39307 -10.37596 -10.05932 -10.02393 -9.79348 -9.66773 -9.13700 -8.87382 -8.64792 -8.53927 -8.41032 -6.80901 -5.71988 -3.03497 0.09391 0.54418 1.72499 2.52269 3.28668 3.37342 3.39729 3.46015 3.48092 3.98557 4.09431 4.38214 4.48917 4.50795 4.58139 4.61844 4.91669 4.93937 5.03304 5.14301 5.28272 5.35778 5.45937 5.50394 5.59005 5.60823 5.69456 5.73974 5.77223 5.87738 5.95160 5.97925 6.07777 6.12508 6.13544 6.20769 6.24923 6.31711 6.35966 6.44264 6.52579 6.64125 6.68849 6.81549 7.09038 7.53052 7.53848 7.74855 7.79970 7.86426 8.25013 8.46791 9.22944 9.82953 10.48558 11.40182 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010277 B = 0.003711 C = 0.003224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2724.004387 B = 7542.827812 C = 8683.485701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C 0.214 3.786 3 N -0.486 5.486 4 C 0.149 3.851 5 C -0.103 4.103 6 C -0.092 4.092 7 C -0.128 4.128 8 C -0.082 4.082 9 C -0.119 4.119 10 C -0.012 4.012 11 C -0.180 4.180 12 C 0.566 3.434 13 O -0.525 6.525 14 N -0.695 5.695 15 C 0.156 3.844 16 C -0.148 4.148 17 C -0.147 4.147 18 C 0.177 3.823 19 N -0.603 5.603 20 C -0.220 4.220 21 H 0.077 0.923 22 C -0.009 4.009 23 N -0.925 5.925 24 Si 0.909 3.091 25 H -0.280 1.280 26 H -0.291 1.291 27 H -0.292 1.292 28 C 0.131 3.869 29 H 0.085 0.915 30 H 0.066 0.934 31 H 0.106 0.894 32 H 0.135 0.865 33 H 0.129 0.871 34 H 0.128 0.872 35 H 0.133 0.867 36 H 0.145 0.855 37 H 0.395 0.605 38 H 0.072 0.928 39 H 0.050 0.950 40 H 0.064 0.936 41 H 0.063 0.937 42 H 0.074 0.926 43 H 0.044 0.956 44 H 0.044 0.956 45 H 0.250 0.750 46 H 0.026 0.974 47 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.618 13.207 -13.140 18.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.061 3.939 3 N -0.195 5.195 4 C 0.027 3.973 5 C -0.121 4.121 6 C -0.112 4.112 7 C -0.146 4.146 8 C -0.101 4.101 9 C -0.121 4.121 10 C -0.039 4.039 11 C -0.185 4.185 12 C 0.352 3.648 13 O -0.404 6.404 14 N -0.344 5.344 15 C 0.070 3.930 16 C -0.207 4.207 17 C -0.185 4.185 18 C 0.053 3.947 19 N -0.329 5.329 20 C -0.348 4.348 21 H 0.095 0.905 22 C -0.205 4.205 23 N -0.573 5.573 24 Si 0.740 3.260 25 H -0.205 1.205 26 H -0.218 1.218 27 H -0.219 1.219 28 C 0.004 3.996 29 H 0.104 0.896 30 H 0.085 0.915 31 H 0.125 0.875 32 H 0.153 0.847 33 H 0.147 0.853 34 H 0.146 0.854 35 H 0.151 0.849 36 H 0.163 0.837 37 H 0.230 0.770 38 H 0.091 0.909 39 H 0.069 0.931 40 H 0.083 0.917 41 H 0.081 0.919 42 H 0.093 0.907 43 H 0.063 0.937 44 H 0.062 0.938 45 H 0.060 0.940 46 H 0.044 0.956 47 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 2.480 13.962 -12.863 19.145 hybrid contribution 1.307 -0.818 1.150 1.924 sum 3.787 13.143 -11.712 18.007 Atomic orbital electron populations 1.21118 0.87242 1.03712 1.04639 1.21607 0.97704 0.86194 0.88369 1.67906 1.08154 1.28189 1.15288 1.19003 0.89236 0.92971 0.96071 1.20797 0.94192 0.96365 1.00773 1.20953 0.93696 0.98768 0.97821 1.20904 1.00398 0.92275 1.01006 1.21088 0.92518 0.98796 0.97695 1.18775 0.94969 0.93625 1.04701 1.22049 0.93402 0.97732 0.90708 1.20923 0.94045 0.95673 1.07839 1.17774 0.87218 0.82974 0.76790 1.90683 1.13328 1.86805 1.49549 1.45724 1.10308 1.05270 1.73131 1.21577 0.92729 0.82324 0.96376 1.21988 0.99543 1.02833 0.96331 1.23285 0.98012 0.96158 1.01077 1.21148 0.91832 0.97880 0.83884 1.44445 1.20951 1.65903 1.01609 1.19115 1.04842 1.30732 0.80150 0.90526 1.24746 0.97034 1.00785 0.97940 1.69949 1.11108 1.43082 1.33169 0.86078 0.77281 0.77245 0.85442 1.20517 1.21759 1.21881 1.21894 0.91736 0.97845 0.88102 0.89636 0.91513 0.87535 0.84679 0.85285 0.85402 0.84895 0.83740 0.77025 0.90916 0.93133 0.91744 0.91873 0.90747 0.93745 0.93794 0.93953 0.95622 0.92475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.51 8.83 36.01 0.32 -1.19 16 2 C 0.21 3.24 6.82 -82.15 -0.56 2.68 16 3 N -0.49 -7.30 10.20 -6.93 -0.07 -7.37 16 4 C 0.15 2.04 6.61 -84.79 -0.56 1.48 16 5 C -0.10 -1.13 9.97 -39.47 -0.39 -1.52 16 6 C -0.09 -0.81 9.94 -39.93 -0.40 -1.21 16 7 C -0.13 -1.12 9.96 -39.93 -0.40 -1.51 16 8 C -0.08 -0.84 9.77 -39.46 -0.39 -1.22 16 9 C -0.12 -1.52 5.74 -106.81 -0.61 -2.13 16 10 C -0.01 -0.16 9.38 -38.43 -0.36 -0.52 16 11 C -0.18 -2.69 5.88 -104.83 -0.62 -3.31 16 12 C 0.57 9.32 7.09 -12.37 -0.09 9.23 16 13 O -0.53 -9.51 10.10 5.30 0.05 -9.46 16 14 N -0.69 -10.97 5.12 -46.44 -0.24 -11.20 16 15 C 0.16 2.65 0.83 -129.51 -0.11 2.55 16 16 C -0.15 -2.14 8.60 37.16 0.32 -1.82 16 17 C -0.15 -2.50 6.00 -24.74 -0.15 -2.65 16 18 C 0.18 4.08 5.36 -3.07 -0.02 4.07 16 19 N -0.60 -15.19 3.39 -170.07 -0.58 -15.77 16 20 C -0.22 -6.18 10.28 -15.06 -0.15 -6.34 16 21 H 0.08 2.15 7.83 -52.48 -0.41 1.74 16 22 C -0.01 -0.27 5.49 -17.43 -0.10 -0.36 16 23 N -0.92 -26.69 10.31 55.49 0.57 -26.12 16 24 Si 0.91 22.38 29.55 -169.99 -5.02 17.36 16 25 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 26 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 27 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 28 C 0.13 2.80 6.10 -2.53 -0.02 2.79 16 29 H 0.09 1.21 8.14 -51.92 -0.42 0.79 16 30 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.11 1.52 5.80 -51.93 -0.30 1.22 16 32 H 0.14 1.29 8.06 -52.49 -0.42 0.86 16 33 H 0.13 0.75 8.06 -52.49 -0.42 0.33 16 34 H 0.13 0.78 8.06 -52.49 -0.42 0.36 16 35 H 0.13 1.07 8.06 -52.49 -0.42 0.65 16 36 H 0.14 1.58 6.53 -52.49 -0.34 1.23 16 37 H 0.39 5.47 6.61 -40.82 -0.27 5.21 16 38 H 0.07 1.13 6.53 -51.93 -0.34 0.79 16 39 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.06 0.87 8.12 -51.93 -0.42 0.45 16 41 H 0.06 0.92 8.05 -51.93 -0.42 0.50 16 42 H 0.07 1.18 8.03 -51.93 -0.42 0.77 16 43 H 0.04 1.12 7.38 -51.93 -0.38 0.73 16 44 H 0.04 1.14 7.51 -51.93 -0.39 0.75 16 45 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 46 H 0.03 0.55 8.04 -51.93 -0.42 0.14 16 47 H 0.06 1.32 6.31 -51.93 -0.33 0.99 16 LS Contribution 374.35 15.07 5.64 5.64 Total: -1.00 -32.66 374.35 -10.45 -43.11 By element: Atomic # 1 Polarization: 11.36 SS G_CDS: -6.53 Total: 4.82 kcal Atomic # 6 Polarization: 3.26 SS G_CDS: -4.27 Total: -1.01 kcal Atomic # 7 Polarization: -60.15 SS G_CDS: -0.31 Total: -60.47 kcal Atomic # 8 Polarization: -9.51 SS G_CDS: 0.05 Total: -9.46 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -5.02 Total: 17.36 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -32.66 -10.45 -43.11 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046349718.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.353 kcal (2) G-P(sol) polarization free energy of solvation -32.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.111 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds