Wall clock time and date at job start Tue Mar 31 2020 22:25:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.39233 * 119.14917 * 2 1 4 4 C 1.36633 * 119.90524 * 180.02562 * 3 2 1 5 5 C 1.40806 * 118.15384 * 0.02562 * 4 3 2 6 6 C 1.40471 * 121.26347 * 180.02562 * 5 4 3 7 7 C 1.36319 * 120.08270 * 179.97438 * 6 5 4 8 8 C 1.38906 * 121.06148 * 0.02562 * 7 6 5 9 9 C 1.38703 * 120.72321 * 359.97438 * 8 7 6 10 10 C 1.47439 * 120.33564 * 179.97438 * 9 8 7 11 11 O 1.21604 * 120.00543 * 180.02562 * 10 9 8 12 12 N 1.34774 * 119.99544 * 0.02562 * 10 9 8 13 13 C 1.46501 * 119.99732 * 179.97438 * 12 10 9 14 14 C 1.52995 * 110.78169 * 298.21030 * 13 12 10 15 15 C 1.55405 * 110.69436 * 174.82160 * 13 12 10 16 16 C 1.54914 * 101.66697 * 277.04903 * 15 13 12 17 17 N 1.47426 * 104.82992 * 323.07703 * 16 15 13 18 18 C 1.36936 * 125.64583 * 204.09666 * 17 16 15 19 19 H 1.07997 * 119.99931 * 180.02562 * 18 17 16 20 20 C 1.38819 * 120.00094 * 0.03301 * 18 17 16 21 21 N 1.31618 * 119.99956 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 119.99883 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47048 * 0.02562 * 22 20 18 24 24 H 1.48504 * 109.46969 * 120.00174 * 22 20 18 25 25 H 1.48497 * 109.47276 * 240.00208 * 22 20 18 26 26 C 1.47018 * 108.70517 * 24.12623 * 17 16 15 27 27 C 1.41550 * 118.93775 * 0.24329 * 5 4 3 28 28 N 1.31228 * 119.15658 * 180.02562 * 2 1 3 29 29 H 1.09004 * 109.46976 * 90.00091 * 1 2 3 30 30 H 1.09000 * 109.46779 * 209.99630 * 1 2 3 31 31 H 1.09001 * 109.47579 * 329.99734 * 1 2 3 32 32 H 1.08001 * 120.05090 * 0.04691 * 3 2 1 33 33 H 1.07994 * 120.92626 * 179.97438 * 4 3 2 34 34 H 1.07999 * 119.95903 * 359.97438 * 6 5 4 35 35 H 1.08004 * 119.46781 * 179.97438 * 7 6 5 36 36 H 1.08002 * 119.63710 * 179.97438 * 8 7 6 37 37 H 0.97000 * 120.00280 * 359.97438 * 12 10 9 38 38 H 1.08999 * 109.47083 * 181.78659 * 14 13 12 39 39 H 1.09002 * 109.47293 * 301.78668 * 14 13 12 40 40 H 1.09000 * 109.47062 * 61.78763 * 14 13 12 41 41 H 1.09000 * 110.89538 * 158.97708 * 15 13 12 42 42 H 1.09000 * 111.06973 * 35.19551 * 15 13 12 43 43 H 1.08999 * 110.37121 * 204.23438 * 16 15 13 44 44 H 1.09003 * 110.36718 * 81.91343 * 16 15 13 45 45 H 0.96998 * 120.00119 * 179.97438 * 21 20 18 46 46 H 1.09002 * 109.88241 * 118.36067 * 26 17 16 47 47 H 1.09000 * 109.88049 * 239.37196 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1852 1.2160 0.0000 4 6 3.5514 1.2340 -0.0005 5 6 4.2321 0.0014 -0.0016 6 6 5.6356 -0.0563 -0.0017 7 6 6.2699 -1.2629 -0.0022 8 6 5.5501 -2.4509 -0.0032 9 6 4.1632 -2.4392 -0.0032 10 6 3.4077 -3.7053 -0.0049 11 8 2.1918 -3.6880 -0.0053 12 7 4.0649 -4.8820 -0.0059 13 6 3.3143 -6.1401 -0.0070 14 6 2.4555 -6.2610 1.2534 15 6 4.2763 -7.3534 -0.1393 16 6 4.4990 -7.4110 -1.6713 17 7 3.1947 -7.0500 -2.2560 18 6 2.7570 -7.3975 -3.5061 19 1 1.7807 -7.0822 -3.8434 20 6 3.5680 -8.1554 -4.3398 21 7 4.7576 -8.5403 -3.9285 22 14 2.9711 -8.6288 -6.0454 23 1 1.6104 -8.0760 -6.2647 24 1 3.8991 -8.0775 -7.0653 25 1 2.9295 -10.1086 -6.1622 26 6 2.4422 -6.2545 -1.2751 27 6 3.4788 -1.1970 -0.0074 28 7 2.1463 -1.1460 -0.0005 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3634 0.8899 0.5139 32 1 1.6322 2.1437 0.0008 33 1 4.0941 2.1677 -0.0010 34 1 6.2129 0.8565 -0.0013 35 1 7.3494 -1.2957 -0.0027 36 1 6.0763 -3.3941 -0.0041 37 1 5.0348 -4.8959 -0.0060 38 1 1.9317 -7.2168 1.2459 39 1 3.0940 -6.2034 2.1350 40 1 1.7290 -5.4487 1.2773 41 1 3.8024 -8.2664 0.2212 42 1 5.2139 -7.1691 0.3851 43 1 4.7856 -8.4177 -1.9754 44 1 5.2613 -6.6919 -1.9711 45 1 5.3241 -9.0701 -4.5108 46 1 2.2420 -5.2618 -1.6781 47 1 1.5032 -6.7534 -1.0354 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001046408297.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:25:55 Heat of formation + Delta-G solvation = 57.322511 kcal Electronic energy + Delta-G solvation = -29554.920233 eV Core-core repulsion = 25703.638152 eV Total energy + Delta-G solvation = -3851.282081 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.10262 -39.57229 -37.53269 -36.86996 -33.92626 -33.56746 -32.19867 -31.81616 -30.47747 -29.42698 -28.58036 -27.98260 -25.60279 -24.19010 -23.90586 -23.17029 -22.55382 -20.60902 -20.18801 -19.03461 -18.08384 -17.86181 -16.81526 -16.43300 -15.95845 -15.37558 -15.00084 -14.89026 -14.62054 -14.26124 -14.23862 -13.99815 -13.61793 -13.29877 -13.06966 -13.01247 -12.94815 -12.63468 -12.30282 -12.17102 -12.14045 -11.91770 -11.63212 -11.54719 -11.46377 -11.43462 -10.88180 -10.83098 -10.59494 -10.30294 -10.27810 -10.00508 -9.89070 -9.64644 -9.49880 -8.91851 -8.84086 -8.59120 -8.51921 -8.31490 -6.73798 -5.59521 -2.99027 0.05224 0.66960 1.66622 2.64179 3.41228 3.43943 3.49679 3.50049 3.52588 4.07338 4.12358 4.38494 4.49516 4.55537 4.62501 4.68369 4.86801 4.93263 5.10556 5.15837 5.25671 5.37841 5.46969 5.53503 5.54923 5.59476 5.64765 5.71262 5.76310 5.81582 5.88645 5.95553 6.03924 6.11599 6.17159 6.24877 6.30366 6.35331 6.44376 6.53079 6.61150 6.64493 6.80801 6.95344 7.27571 7.51510 7.70589 7.86717 7.94020 8.04227 8.41464 8.72833 9.29664 9.90418 10.55769 11.45036 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.012812 B = 0.003146 C = 0.003072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2184.999750 B = 8897.047533 C = 9113.261200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.156 3.844 3 C -0.173 4.173 4 C -0.058 4.058 5 C -0.117 4.117 6 C -0.076 4.076 7 C -0.126 4.126 8 C -0.064 4.064 9 C -0.101 4.101 10 C 0.553 3.447 11 O -0.494 6.494 12 N -0.709 5.709 13 C 0.162 3.838 14 C -0.148 4.148 15 C -0.146 4.146 16 C 0.153 3.847 17 N -0.604 5.604 18 C -0.213 4.213 19 H 0.077 0.923 20 C -0.014 4.014 21 N -0.925 5.925 22 Si 0.913 3.087 23 H -0.280 1.280 24 H -0.292 1.292 25 H -0.291 1.291 26 C 0.137 3.863 27 C 0.168 3.832 28 N -0.434 5.434 29 H 0.081 0.919 30 H 0.082 0.918 31 H 0.073 0.927 32 H 0.136 0.864 33 H 0.139 0.861 34 H 0.132 0.868 35 H 0.134 0.866 36 H 0.135 0.865 37 H 0.392 0.608 38 H 0.063 0.937 39 H 0.048 0.952 40 H 0.071 0.929 41 H 0.076 0.924 42 H 0.061 0.939 43 H 0.108 0.892 44 H 0.009 0.991 45 H 0.250 0.750 46 H 0.036 0.964 47 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.191 19.264 12.904 23.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.003 3.997 3 C -0.193 4.193 4 C -0.084 4.084 5 C -0.119 4.119 6 C -0.095 4.095 7 C -0.144 4.144 8 C -0.085 4.085 9 C -0.105 4.105 10 C 0.338 3.662 11 O -0.368 6.368 12 N -0.361 5.361 13 C 0.076 3.924 14 C -0.206 4.206 15 C -0.185 4.185 16 C 0.029 3.971 17 N -0.330 5.330 18 C -0.342 4.342 19 H 0.095 0.905 20 C -0.209 4.209 21 N -0.575 5.575 22 Si 0.744 3.256 23 H -0.206 1.206 24 H -0.219 1.219 25 H -0.218 1.218 26 C 0.010 3.990 27 C 0.045 3.955 28 N -0.142 5.142 29 H 0.099 0.901 30 H 0.101 0.899 31 H 0.092 0.908 32 H 0.154 0.846 33 H 0.157 0.843 34 H 0.150 0.850 35 H 0.151 0.849 36 H 0.153 0.847 37 H 0.227 0.773 38 H 0.082 0.918 39 H 0.067 0.933 40 H 0.090 0.910 41 H 0.094 0.906 42 H 0.080 0.920 43 H 0.125 0.875 44 H 0.027 0.973 45 H 0.060 0.940 46 H 0.053 0.947 47 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges 0.934 18.281 12.712 22.286 hybrid contribution 0.942 0.693 -1.036 1.562 sum 1.876 18.974 11.676 22.358 Atomic orbital electron populations 1.20779 0.88604 1.03584 1.03408 1.21711 0.97561 0.88057 0.92369 1.21768 0.95056 0.99369 1.03097 1.21420 0.94483 0.96942 0.95581 1.18820 0.94796 0.94011 1.04305 1.21107 0.92559 0.98598 0.97192 1.20828 1.00592 0.91931 1.01010 1.21495 0.92685 0.99212 0.95092 1.20076 0.93179 0.92896 1.04381 1.17800 0.87697 0.82798 0.77898 1.90811 1.12502 1.86733 1.46783 1.45923 1.09637 1.05172 1.75416 1.21348 0.92720 0.82726 0.95572 1.22017 1.00048 1.02719 0.95863 1.23399 0.97497 0.96073 1.01545 1.21924 0.87142 1.02805 0.85279 1.44514 1.14987 1.60355 1.13176 1.19158 0.99994 1.26103 0.88935 0.90532 1.24744 0.96462 1.00994 0.98705 1.69785 1.09622 1.42558 1.35546 0.86007 0.77755 0.77875 0.83994 1.20555 1.21887 1.21791 1.21598 0.93521 0.95470 0.88395 1.18587 0.89374 0.91332 0.96233 1.68183 1.07707 1.27586 1.10699 0.90077 0.89871 0.90812 0.84615 0.84337 0.85043 0.84853 0.84696 0.77274 0.91834 0.93258 0.90982 0.90572 0.92014 0.87475 0.97289 0.93950 0.94651 0.95277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.07 10.14 36.01 0.37 -0.70 16 2 C 0.16 2.01 6.78 -82.48 -0.56 1.45 16 3 C -0.17 -1.70 9.64 -39.79 -0.38 -2.08 16 4 C -0.06 -0.56 9.90 -39.19 -0.39 -0.95 16 5 C -0.12 -1.42 5.74 -106.82 -0.61 -2.03 16 6 C -0.08 -0.72 9.75 -39.43 -0.38 -1.10 16 7 C -0.13 -1.20 9.93 -40.03 -0.40 -1.59 16 8 C -0.06 -0.76 9.52 -39.16 -0.37 -1.14 16 9 C -0.10 -1.59 5.91 -104.61 -0.62 -2.21 16 10 C 0.55 10.15 6.99 -12.51 -0.09 10.06 16 11 O -0.49 -10.57 12.14 5.27 0.06 -10.51 16 12 N -0.71 -12.09 5.10 -46.84 -0.24 -12.33 16 13 C 0.16 3.05 0.81 -129.85 -0.11 2.94 16 14 C -0.15 -2.47 8.42 37.15 0.31 -2.16 16 15 C -0.15 -2.73 6.10 -24.44 -0.15 -2.88 16 16 C 0.15 3.72 5.87 -2.53 -0.01 3.71 16 17 N -0.60 -16.18 3.39 -170.07 -0.58 -16.76 16 18 C -0.21 -6.23 10.27 -15.06 -0.15 -6.38 16 19 H 0.08 2.21 7.83 -52.49 -0.41 1.80 16 20 C -0.01 -0.41 5.49 -17.43 -0.10 -0.51 16 21 N -0.93 -27.27 10.09 55.49 0.56 -26.71 16 22 Si 0.91 22.78 29.55 -169.99 -5.02 17.75 16 23 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 24 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 25 H -0.29 -7.23 7.11 56.52 0.40 -6.82 16 26 C 0.14 3.21 6.12 -3.07 -0.02 3.19 16 27 C 0.17 2.64 6.61 -84.58 -0.56 2.08 16 28 N -0.43 -7.26 8.33 -7.01 -0.06 -7.32 16 29 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 30 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 31 H 0.07 0.51 8.07 -51.93 -0.42 0.09 16 32 H 0.14 0.87 8.06 -52.49 -0.42 0.44 16 33 H 0.14 0.82 8.06 -52.49 -0.42 0.40 16 34 H 0.13 0.80 8.06 -52.49 -0.42 0.38 16 35 H 0.13 0.86 8.06 -52.48 -0.42 0.44 16 36 H 0.14 1.33 6.37 -52.49 -0.33 1.00 16 37 H 0.39 5.66 6.49 -40.82 -0.27 5.40 16 38 H 0.06 1.01 8.13 -51.93 -0.42 0.59 16 39 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.07 1.31 6.46 -51.93 -0.34 0.98 16 41 H 0.08 1.40 8.04 -51.93 -0.42 0.98 16 42 H 0.06 0.96 8.04 -51.93 -0.42 0.55 16 43 H 0.11 2.92 5.87 -51.93 -0.30 2.61 16 44 H 0.01 0.23 8.14 -51.93 -0.42 -0.19 16 45 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 46 H 0.04 0.92 6.47 -51.93 -0.34 0.58 16 47 H 0.03 0.70 7.82 -51.93 -0.41 0.29 16 LS Contribution 376.64 15.07 5.68 5.68 Total: -1.00 -35.99 376.64 -10.41 -46.40 By element: Atomic # 1 Polarization: 10.67 SS G_CDS: -6.59 Total: 4.08 kcal Atomic # 6 Polarization: 3.93 SS G_CDS: -4.22 Total: -0.29 kcal Atomic # 7 Polarization: -62.80 SS G_CDS: -0.31 Total: -63.12 kcal Atomic # 8 Polarization: -10.57 SS G_CDS: 0.06 Total: -10.51 kcal Atomic # 14 Polarization: 22.78 SS G_CDS: -5.02 Total: 17.75 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -35.99 -10.41 -46.40 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046408297.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.726 kcal (2) G-P(sol) polarization free energy of solvation -35.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.403 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds