Wall clock time and date at job start Tue Mar 31 2020 22:25:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.39233 * 119.14917 * 2 1 4 4 C 1.36633 * 119.90524 * 180.02562 * 3 2 1 5 5 C 1.40806 * 118.15384 * 0.02562 * 4 3 2 6 6 C 1.40471 * 121.26347 * 180.02562 * 5 4 3 7 7 C 1.36319 * 120.08270 * 179.97438 * 6 5 4 8 8 C 1.38906 * 121.06148 * 0.02562 * 7 6 5 9 9 C 1.38703 * 120.72321 * 359.97438 * 8 7 6 10 10 C 1.47439 * 120.33564 * 179.97438 * 9 8 7 11 11 O 1.21604 * 120.00543 * 180.02562 * 10 9 8 12 12 N 1.34774 * 119.99544 * 0.02562 * 10 9 8 13 13 C 1.46501 * 119.99732 * 179.97438 * 12 10 9 14 14 C 1.52995 * 110.78169 * 298.21030 * 13 12 10 15 15 C 1.55405 * 110.69436 * 174.82160 * 13 12 10 16 16 C 1.54914 * 101.66697 * 277.04903 * 15 13 12 17 17 N 1.47426 * 104.82992 * 323.07703 * 16 15 13 18 18 C 1.36936 * 125.64583 * 204.09666 * 17 16 15 19 19 H 1.07997 * 119.99931 * 180.02562 * 18 17 16 20 20 C 1.38819 * 120.00094 * 0.03301 * 18 17 16 21 21 N 1.31618 * 119.99956 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 119.99883 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47048 * 0.02562 * 22 20 18 24 24 H 1.48504 * 109.46969 * 120.00174 * 22 20 18 25 25 H 1.48497 * 109.47276 * 240.00208 * 22 20 18 26 26 C 1.47018 * 108.70517 * 24.12623 * 17 16 15 27 27 C 1.41550 * 118.93775 * 0.24329 * 5 4 3 28 28 N 1.31228 * 119.15658 * 180.02562 * 2 1 3 29 29 H 1.09004 * 109.46976 * 90.00091 * 1 2 3 30 30 H 1.09000 * 109.46779 * 209.99630 * 1 2 3 31 31 H 1.09001 * 109.47579 * 329.99734 * 1 2 3 32 32 H 1.08001 * 120.05090 * 0.04691 * 3 2 1 33 33 H 1.07994 * 120.92626 * 179.97438 * 4 3 2 34 34 H 1.07999 * 119.95903 * 359.97438 * 6 5 4 35 35 H 1.08004 * 119.46781 * 179.97438 * 7 6 5 36 36 H 1.08002 * 119.63710 * 179.97438 * 8 7 6 37 37 H 0.97000 * 120.00280 * 359.97438 * 12 10 9 38 38 H 1.08999 * 109.47083 * 181.78659 * 14 13 12 39 39 H 1.09002 * 109.47293 * 301.78668 * 14 13 12 40 40 H 1.09000 * 109.47062 * 61.78763 * 14 13 12 41 41 H 1.09000 * 110.89538 * 158.97708 * 15 13 12 42 42 H 1.09000 * 111.06973 * 35.19551 * 15 13 12 43 43 H 1.08999 * 110.37121 * 204.23438 * 16 15 13 44 44 H 1.09003 * 110.36718 * 81.91343 * 16 15 13 45 45 H 0.96998 * 120.00119 * 179.97438 * 21 20 18 46 46 H 1.09002 * 109.88241 * 118.36067 * 26 17 16 47 47 H 1.09000 * 109.88049 * 239.37196 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1852 1.2160 0.0000 4 6 3.5514 1.2340 -0.0005 5 6 4.2321 0.0014 -0.0016 6 6 5.6356 -0.0563 -0.0017 7 6 6.2699 -1.2629 -0.0022 8 6 5.5501 -2.4509 -0.0032 9 6 4.1632 -2.4392 -0.0032 10 6 3.4077 -3.7053 -0.0049 11 8 2.1918 -3.6880 -0.0053 12 7 4.0649 -4.8820 -0.0059 13 6 3.3143 -6.1401 -0.0070 14 6 2.4555 -6.2610 1.2534 15 6 4.2763 -7.3534 -0.1393 16 6 4.4990 -7.4110 -1.6713 17 7 3.1947 -7.0500 -2.2560 18 6 2.7570 -7.3975 -3.5061 19 1 1.7807 -7.0822 -3.8434 20 6 3.5680 -8.1554 -4.3398 21 7 4.7576 -8.5403 -3.9285 22 14 2.9711 -8.6288 -6.0454 23 1 1.6104 -8.0760 -6.2647 24 1 3.8991 -8.0775 -7.0653 25 1 2.9295 -10.1086 -6.1622 26 6 2.4422 -6.2545 -1.2751 27 6 3.4788 -1.1970 -0.0074 28 7 2.1463 -1.1460 -0.0005 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3634 0.8899 0.5139 32 1 1.6322 2.1437 0.0008 33 1 4.0941 2.1677 -0.0010 34 1 6.2129 0.8565 -0.0013 35 1 7.3494 -1.2957 -0.0027 36 1 6.0763 -3.3941 -0.0041 37 1 5.0348 -4.8959 -0.0060 38 1 1.9317 -7.2168 1.2459 39 1 3.0940 -6.2034 2.1350 40 1 1.7290 -5.4487 1.2773 41 1 3.8024 -8.2664 0.2212 42 1 5.2139 -7.1691 0.3851 43 1 4.7856 -8.4177 -1.9754 44 1 5.2613 -6.6919 -1.9711 45 1 5.3241 -9.0701 -4.5108 46 1 2.2420 -5.2618 -1.6781 47 1 1.5032 -6.7534 -1.0354 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001046408297.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:25:54 Heat of formation + Delta-G solvation = 33.492848 kcal Electronic energy + Delta-G solvation = -29555.953564 eV Core-core repulsion = 25703.638152 eV Total energy + Delta-G solvation = -3852.315413 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.04342 -40.95651 -38.86633 -38.04824 -35.72529 -34.49885 -33.67402 -32.87838 -31.99455 -30.74609 -30.26151 -28.82502 -27.56979 -25.62108 -24.94410 -24.48888 -23.37193 -22.30671 -21.64194 -20.49256 -19.18533 -19.00926 -18.61772 -17.44591 -17.01132 -16.95659 -16.60858 -16.15273 -15.67320 -15.64774 -15.47684 -15.33993 -14.92734 -14.61797 -14.29500 -14.10644 -14.04943 -13.89685 -13.76406 -13.57698 -13.32705 -13.14390 -13.06064 -12.95023 -12.84390 -12.80214 -12.30490 -12.28236 -12.09895 -12.04482 -11.96366 -11.70950 -11.54785 -11.46157 -10.81416 -10.77525 -10.05326 -9.98582 -9.67720 -9.24090 -8.90255 -7.80959 -5.24392 -0.80641 -0.17142 0.78562 1.42642 1.43592 1.54483 1.79462 2.15066 2.29596 2.46370 3.15437 3.25019 3.27844 3.50841 3.65931 3.69462 3.71405 3.84885 3.97992 4.00182 4.01431 4.15843 4.18977 4.36798 4.44571 4.60030 4.62801 4.66948 4.70996 4.75176 4.79199 4.84287 4.90737 4.95153 4.99005 5.00023 5.08437 5.09350 5.16837 5.22804 5.32193 5.36495 5.40142 5.59447 5.60636 5.71439 5.78942 5.86257 6.29001 6.66327 7.09526 7.12857 7.40377 7.74689 8.38999 9.20684 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.012812 B = 0.003146 C = 0.003072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2184.999750 B = 8897.047533 C = 9113.261200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.138 3.862 3 C -0.177 4.177 4 C -0.046 4.046 5 C -0.137 4.137 6 C -0.054 4.054 7 C -0.133 4.133 8 C -0.050 4.050 9 C -0.153 4.153 10 C 0.547 3.453 11 O -0.539 6.539 12 N -0.704 5.704 13 C 0.173 3.827 14 C -0.137 4.137 15 C -0.126 4.126 16 C 0.157 3.843 17 N -0.623 5.623 18 C -0.244 4.244 19 H 0.065 0.935 20 C -0.059 4.059 21 N -0.942 5.942 22 Si 0.979 3.021 23 H -0.276 1.276 24 H -0.288 1.288 25 H -0.283 1.283 26 C 0.139 3.861 27 C 0.136 3.864 28 N -0.498 5.498 29 H 0.082 0.918 30 H 0.056 0.944 31 H 0.110 0.890 32 H 0.175 0.825 33 H 0.186 0.814 34 H 0.178 0.822 35 H 0.173 0.827 36 H 0.150 0.850 37 H 0.405 0.595 38 H 0.070 0.930 39 H 0.077 0.923 40 H 0.050 0.950 41 H 0.085 0.915 42 H 0.103 0.897 43 H 0.079 0.921 44 H -0.008 1.008 45 H 0.250 0.750 46 H 0.002 0.998 47 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.595 21.854 13.799 26.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.014 4.014 3 C -0.196 4.196 4 C -0.072 4.072 5 C -0.139 4.139 6 C -0.072 4.072 7 C -0.150 4.150 8 C -0.070 4.070 9 C -0.157 4.157 10 C 0.335 3.665 11 O -0.416 6.416 12 N -0.357 5.357 13 C 0.086 3.914 14 C -0.196 4.196 15 C -0.164 4.164 16 C 0.032 3.968 17 N -0.349 5.349 18 C -0.373 4.373 19 H 0.083 0.917 20 C -0.252 4.252 21 N -0.592 5.592 22 Si 0.807 3.193 23 H -0.201 1.201 24 H -0.215 1.215 25 H -0.210 1.210 26 C 0.012 3.988 27 C 0.013 3.987 28 N -0.208 5.208 29 H 0.100 0.900 30 H 0.076 0.924 31 H 0.129 0.871 32 H 0.192 0.808 33 H 0.203 0.797 34 H 0.195 0.805 35 H 0.190 0.810 36 H 0.167 0.833 37 H 0.243 0.757 38 H 0.089 0.911 39 H 0.096 0.904 40 H 0.069 0.931 41 H 0.103 0.897 42 H 0.122 0.878 43 H 0.097 0.903 44 H 0.010 0.990 45 H 0.059 0.941 46 H 0.020 0.980 47 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges 3.366 20.877 13.629 25.158 hybrid contribution 0.211 0.004 -1.355 1.371 sum 3.576 20.881 12.275 24.484 Atomic orbital electron populations 1.20845 0.87640 1.04076 1.03581 1.22273 0.98655 0.88720 0.91777 1.22119 0.95725 0.99368 1.02387 1.21980 0.94537 0.97614 0.93030 1.19196 0.96187 0.93749 1.04805 1.21669 0.91520 1.00416 0.93633 1.21267 1.02370 0.90909 1.00486 1.21811 0.91277 1.01270 0.92686 1.19996 0.94640 0.91636 1.09460 1.18380 0.87545 0.83941 0.76614 1.90770 1.14494 1.87450 1.48875 1.45813 1.10193 1.04410 1.75321 1.21165 0.92456 0.83780 0.94010 1.21919 0.99720 1.02263 0.95680 1.23256 0.99416 0.96263 0.97500 1.21762 0.85677 1.00364 0.88992 1.44796 1.16186 1.60763 1.13161 1.19392 1.00121 1.27131 0.90698 0.91664 1.25539 0.96677 1.00726 1.02221 1.70007 1.10212 1.42455 1.36506 0.85014 0.77385 0.77614 0.79324 1.20073 1.21513 1.20969 1.21620 0.94128 0.92957 0.90053 1.18938 0.89624 0.92759 0.97344 1.68106 1.09106 1.30022 1.13534 0.89986 0.92445 0.87141 0.80770 0.79677 0.80490 0.80960 0.83251 0.75731 0.91072 0.90371 0.93089 0.89685 0.87847 0.90342 0.98990 0.94059 0.98024 0.96393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.19 10.14 71.24 0.72 -1.47 16 2 C 0.14 3.65 6.78 42.89 0.29 3.94 16 3 C -0.18 -3.08 9.64 22.13 0.21 -2.87 16 4 C -0.05 -0.73 9.90 22.52 0.22 -0.51 16 5 C -0.14 -3.05 5.74 -21.29 -0.12 -3.17 16 6 C -0.05 -0.80 9.75 22.37 0.22 -0.59 16 7 C -0.13 -2.07 9.93 21.98 0.22 -1.85 16 8 C -0.05 -1.14 9.52 22.54 0.21 -0.92 16 9 C -0.15 -5.00 5.91 -19.86 -0.12 -5.11 16 10 C 0.55 21.42 6.99 86.67 0.61 22.02 16 11 O -0.54 -25.22 12.14 -4.04 -0.05 -25.27 16 12 N -0.70 -24.66 5.10 -420.38 -2.14 -26.81 16 13 C 0.17 6.62 0.81 4.88 0.00 6.63 16 14 C -0.14 -4.62 8.42 71.98 0.61 -4.01 16 15 C -0.13 -4.59 6.10 32.08 0.20 -4.40 16 16 C 0.16 7.78 5.87 86.86 0.51 8.29 16 17 N -0.62 -34.93 3.39 -691.97 -2.35 -37.28 16 18 C -0.24 -14.90 10.27 84.04 0.86 -14.04 16 19 H 0.07 3.99 7.83 -2.91 -0.02 3.96 16 20 C -0.06 -3.47 5.49 84.86 0.47 -3.00 16 21 N -0.94 -56.66 10.09 21.65 0.22 -56.44 16 22 Si 0.98 47.73 29.55 68.60 2.03 49.75 16 23 H -0.28 -13.12 7.11 99.48 0.71 -12.42 16 24 H -0.29 -13.86 7.11 99.48 0.71 -13.15 16 25 H -0.28 -13.43 7.11 99.48 0.71 -12.72 16 26 C 0.14 6.93 6.12 86.73 0.53 7.46 16 27 C 0.14 4.43 6.61 40.62 0.27 4.70 16 28 N -0.50 -17.88 8.33 -176.10 -1.47 -19.35 16 29 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 30 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 31 H 0.11 1.40 8.07 -2.39 -0.02 1.38 16 32 H 0.17 1.55 8.06 -2.91 -0.02 1.52 16 33 H 0.19 1.08 8.06 -2.91 -0.02 1.05 16 34 H 0.18 0.99 8.06 -2.91 -0.02 0.97 16 35 H 0.17 1.33 8.06 -2.91 -0.02 1.31 16 36 H 0.15 2.74 6.37 -2.91 -0.02 2.72 16 37 H 0.41 11.60 6.49 -92.71 -0.60 11.00 16 38 H 0.07 2.25 8.13 -2.39 -0.02 2.23 16 39 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 40 H 0.05 1.95 6.46 -2.39 -0.02 1.93 16 41 H 0.08 3.00 8.04 -2.39 -0.02 2.98 16 42 H 0.10 2.94 8.04 -2.39 -0.02 2.92 16 43 H 0.08 4.38 5.87 -2.39 -0.01 4.37 16 44 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 45 H 0.25 14.40 8.31 -92.71 -0.77 13.63 16 46 H 0.00 0.10 6.47 -2.39 -0.02 0.08 16 47 H 0.02 0.92 7.82 -2.39 -0.02 0.90 16 Total: -1.00 -87.35 376.64 2.54 -84.81 By element: Atomic # 1 Polarization: 19.09 SS G_CDS: 0.39 Total: 19.49 kcal Atomic # 6 Polarization: 5.18 SS G_CDS: 5.91 Total: 11.10 kcal Atomic # 7 Polarization: -134.13 SS G_CDS: -5.74 Total: -139.87 kcal Atomic # 8 Polarization: -25.22 SS G_CDS: -0.05 Total: -25.27 kcal Atomic # 14 Polarization: 47.73 SS G_CDS: 2.03 Total: 49.75 kcal Total: -87.35 2.54 -84.81 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046408297.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.305 kcal (2) G-P(sol) polarization free energy of solvation -87.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.812 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds