Wall clock time and date at job start Tue Mar 31 2020 22:43:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46504 * 110.64196 * 2 1 4 4 C 1.34780 * 119.99562 * 300.69777 * 3 2 1 5 5 O 1.21576 * 120.00083 * 359.97438 * 4 3 2 6 6 C 1.47642 * 119.99483 * 180.02562 * 4 3 2 7 7 C 1.39716 * 120.08168 * 0.27396 * 6 4 3 8 8 C 1.37715 * 119.92025 * 180.22962 * 7 6 4 9 9 C 1.39061 * 120.07581 * 359.49793 * 8 7 6 10 10 N 1.39801 * 119.91750 * 180.23472 * 9 8 7 11 11 C 1.36641 * 125.68149 * 359.68884 * 10 9 8 12 12 C 1.34809 * 108.19754 * 179.83324 * 11 10 9 13 13 C 1.40990 * 107.47748 * 0.42354 * 12 11 10 14 14 C 1.34802 * 107.48804 * 359.73532 * 13 12 11 15 15 C 1.39058 * 120.16017 * 0.24934 * 9 8 7 16 16 C 1.37707 * 120.07820 * 0.02562 * 15 9 8 17 17 C 1.55157 * 110.71617 * 123.13449 * 2 1 3 18 18 C 1.55395 * 101.36432 * 153.94936 * 17 2 1 19 19 N 1.47424 * 104.87047 * 323.01855 * 18 17 2 20 20 C 1.36939 * 125.64374 * 204.09594 * 19 18 17 21 21 H 1.08001 * 119.99753 * 169.98927 * 20 19 18 22 22 C 1.38811 * 120.00285 * 349.98060 * 20 19 18 23 23 N 1.31623 * 119.99831 * 350.42509 * 22 20 19 24 24 Si 1.86800 * 120.00173 * 170.42441 * 22 20 19 25 25 H 1.48495 * 109.47304 * 94.14322 * 24 22 20 26 26 H 1.48497 * 109.46872 * 214.14418 * 24 22 20 27 27 H 1.48502 * 109.46902 * 334.14142 * 24 22 20 28 28 C 1.47019 * 108.70421 * 24.13228 * 19 18 17 29 29 H 1.09007 * 109.46803 * 59.30331 * 1 2 3 30 30 H 1.08999 * 109.46698 * 179.30198 * 1 2 3 31 31 H 1.08993 * 109.47423 * 299.30660 * 1 2 3 32 32 H 0.96995 * 119.99884 * 120.69104 * 3 2 1 33 33 H 1.08001 * 120.04257 * 359.97438 * 7 6 4 34 34 H 1.07996 * 119.95939 * 179.76801 * 8 7 6 35 35 H 1.08003 * 125.89918 * 359.97438 * 11 10 9 36 36 H 1.07992 * 126.25929 * 180.13593 * 12 11 10 37 37 H 1.08004 * 126.25143 * 179.71039 * 13 12 11 38 38 H 1.08005 * 125.90570 * 179.97438 * 14 13 12 39 39 H 1.08004 * 119.96066 * 180.02562 * 15 9 8 40 40 H 1.08005 * 120.03820 * 179.97438 * 16 15 9 41 41 H 1.09000 * 111.00995 * 272.11919 * 17 2 1 42 42 H 1.09002 * 111.00534 * 35.97669 * 17 2 1 43 43 H 1.09001 * 110.34013 * 204.17052 * 18 17 2 44 44 H 1.08993 * 110.34500 * 81.87177 * 18 17 2 45 45 H 0.96998 * 119.99909 * 179.97438 * 23 22 20 46 46 H 1.08999 * 109.88222 * 239.51712 * 28 19 18 47 47 H 1.09002 * 109.88048 * 118.35862 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0465 1.3710 0.0000 4 6 1.7264 2.2116 -1.0037 5 8 1.0095 1.8320 -1.9093 6 6 2.2473 3.5931 -1.0040 7 6 3.0769 4.0289 0.0324 8 6 3.5571 5.3196 0.0312 9 6 3.2257 6.1856 -1.0052 10 7 3.7190 7.4937 -1.0055 11 6 4.5259 8.0414 -0.0484 12 6 4.7909 9.3156 -0.3999 13 6 4.1170 9.5693 -1.6121 14 6 3.4698 8.4391 -1.9600 15 6 2.4046 5.7536 -2.0410 16 6 1.9162 4.4661 -2.0435 17 6 2.0789 -0.7933 1.2153 18 6 3.4674 -1.2454 0.6839 19 7 3.2471 -1.5461 -0.7424 20 6 4.0078 -2.3901 -1.5067 21 1 3.6750 -2.6713 -2.4950 22 6 5.2068 -2.8842 -1.0115 23 7 5.7064 -2.4006 0.1060 24 14 6.1112 -4.2355 -1.9311 25 1 7.1221 -3.6289 -2.8339 26 1 6.7894 -5.1284 -0.9574 27 1 5.1408 -5.0236 -2.7328 28 6 2.0761 -0.7892 -1.2084 29 1 -0.3633 0.5247 -0.8837 30 1 -0.3633 -1.0276 -0.0125 31 1 -0.3634 0.5030 0.8961 32 1 2.6187 1.6737 0.7224 33 1 3.3379 3.3557 0.8355 34 1 4.1953 5.6583 0.8339 35 1 4.8905 7.5394 0.8356 36 1 5.4031 10.0155 0.1491 37 1 4.1187 10.4993 -2.1613 38 1 2.8593 8.3043 -2.8407 39 1 2.1497 6.4288 -2.8445 40 1 1.2782 4.1314 -2.8481 41 1 2.1819 -0.1489 2.0883 42 1 1.4469 -1.6528 1.4385 43 1 3.8031 -2.1378 1.2124 44 1 4.1954 -0.4418 0.7942 45 1 6.5440 -2.7461 0.4523 46 1 1.3142 -1.4755 -1.5780 47 1 2.3713 -0.0993 -1.9990 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001046458021.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:43:27 Heat of formation + Delta-G solvation = 80.023853 kcal Electronic energy + Delta-G solvation = -28687.533386 eV Core-core repulsion = 24837.235709 eV Total energy + Delta-G solvation = -3850.297677 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.92096 -40.27874 -38.72243 -37.14376 -34.10227 -33.52432 -32.09017 -31.41759 -30.19740 -29.13103 -28.97916 -28.61346 -25.71890 -24.37692 -23.55558 -23.21169 -21.39962 -20.44443 -20.30896 -20.09532 -19.05790 -18.86790 -17.74505 -16.74379 -15.85112 -15.31915 -15.31202 -15.10677 -14.75239 -14.70172 -14.64337 -14.18608 -13.84020 -13.76745 -13.61047 -13.20017 -12.90277 -12.70887 -12.64639 -12.59656 -12.29056 -12.24671 -11.99139 -11.72972 -11.62477 -11.37924 -10.99072 -10.81808 -10.46759 -10.40906 -10.11519 -10.09690 -10.03742 -9.70595 -9.41540 -9.41326 -8.71350 -8.58359 -8.56738 -8.26446 -6.78680 -5.75380 -3.06376 0.34755 1.00448 2.00343 2.51384 2.70084 2.96606 3.33194 3.39904 3.45666 3.47946 3.74675 4.28984 4.40336 4.49868 4.65912 4.71097 4.81524 4.89898 4.97015 5.09835 5.17155 5.27715 5.35547 5.40832 5.46042 5.52868 5.60689 5.70120 5.70996 5.84530 5.93306 5.98718 6.01310 6.08608 6.13420 6.17634 6.28103 6.37053 6.39858 6.48737 6.59562 6.66946 6.81962 6.87518 7.10269 7.11487 7.43467 7.51607 7.75470 7.78484 8.25402 8.44331 9.19999 9.81658 10.49064 11.38206 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.014002 B = 0.002534 C = 0.002332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1999.263507 B =11046.462854 C =12003.652088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.161 3.839 3 N -0.702 5.702 4 C 0.560 3.440 5 O -0.533 6.533 6 C -0.139 4.139 7 C -0.054 4.054 8 C -0.148 4.148 9 C 0.159 3.841 10 N -0.398 5.398 11 C -0.014 4.014 12 C -0.191 4.191 13 C -0.191 4.191 14 C -0.014 4.014 15 C -0.150 4.150 16 C -0.031 4.031 17 C -0.149 4.149 18 C 0.174 3.826 19 N -0.603 5.603 20 C -0.224 4.224 21 H 0.075 0.925 22 C -0.009 4.009 23 N -0.921 5.921 24 Si 0.910 3.090 25 H -0.290 1.290 26 H -0.290 1.290 27 H -0.280 1.280 28 C 0.136 3.864 29 H 0.074 0.926 30 H 0.064 0.936 31 H 0.050 0.950 32 H 0.396 0.604 33 H 0.137 0.863 34 H 0.136 0.864 35 H 0.166 0.834 36 H 0.141 0.859 37 H 0.141 0.859 38 H 0.166 0.834 39 H 0.135 0.865 40 H 0.146 0.854 41 H 0.064 0.936 42 H 0.077 0.923 43 H 0.070 0.930 44 H 0.025 0.975 45 H 0.252 0.748 46 H 0.031 0.969 47 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.773 20.724 2.927 21.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.075 3.925 3 N -0.352 5.352 4 C 0.346 3.654 5 O -0.411 6.411 6 C -0.143 4.143 7 C -0.074 4.074 8 C -0.167 4.167 9 C 0.066 3.934 10 N -0.069 5.069 11 C -0.140 4.140 12 C -0.215 4.215 13 C -0.215 4.215 14 C -0.141 4.141 15 C -0.170 4.170 16 C -0.050 4.050 17 C -0.188 4.188 18 C 0.049 3.951 19 N -0.329 5.329 20 C -0.353 4.353 21 H 0.093 0.907 22 C -0.205 4.205 23 N -0.568 5.568 24 Si 0.741 3.259 25 H -0.217 1.217 26 H -0.216 1.216 27 H -0.206 1.206 28 C 0.010 3.990 29 H 0.093 0.907 30 H 0.083 0.917 31 H 0.069 0.931 32 H 0.232 0.768 33 H 0.155 0.845 34 H 0.153 0.847 35 H 0.184 0.816 36 H 0.159 0.841 37 H 0.159 0.841 38 H 0.183 0.817 39 H 0.153 0.847 40 H 0.164 0.836 41 H 0.083 0.917 42 H 0.096 0.904 43 H 0.089 0.911 44 H 0.043 0.957 45 H 0.062 0.938 46 H 0.049 0.951 47 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -7.187 20.038 2.298 21.411 hybrid contribution 1.065 -0.424 -0.080 1.149 sum -6.122 19.613 2.218 20.666 Atomic orbital electron populations 1.22058 0.94107 1.02355 1.02421 1.21350 0.93085 0.80126 0.97947 1.45909 1.51491 1.12463 1.25360 1.18006 0.80644 0.84521 0.82181 1.90740 1.37578 1.77225 1.35600 1.20149 1.01751 0.95078 0.97277 1.21214 0.93964 0.94900 0.97281 1.20720 1.03534 0.93631 0.98829 1.18065 0.96034 0.83073 0.96273 1.41657 1.37728 1.08052 1.19510 1.21971 1.00341 0.95298 0.96379 1.21025 1.05620 0.95912 0.98913 1.21022 1.03069 0.98388 0.98983 1.21957 1.06681 0.88914 0.96513 1.20766 1.00247 0.97229 0.98723 1.21131 0.95894 0.91147 0.96859 1.23446 1.01168 0.99065 0.95161 1.21481 0.89355 0.99415 0.84837 1.44475 1.30842 1.50823 1.06764 1.19036 0.99498 1.18374 0.98356 0.90675 1.24793 0.96824 1.00686 0.98178 1.69938 1.20587 1.43961 1.22352 0.86129 0.79587 0.81631 0.78603 1.21682 1.21631 1.20595 1.21613 0.90420 0.93108 0.93895 0.90712 0.91693 0.93137 0.76839 0.84499 0.84652 0.81635 0.84111 0.84132 0.81685 0.84685 0.83621 0.91721 0.90411 0.91141 0.95723 0.93807 0.95084 0.94855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.31 8.41 37.16 0.31 -2.00 16 2 C 0.16 2.80 0.80 -129.99 -0.10 2.70 16 3 N -0.70 -10.89 5.10 -46.90 -0.24 -11.13 16 4 C 0.56 8.98 6.98 -12.42 -0.09 8.89 16 5 O -0.53 -10.04 13.28 5.30 0.07 -9.97 16 6 C -0.14 -1.81 5.88 -104.95 -0.62 -2.43 16 7 C -0.05 -0.59 9.53 -39.22 -0.37 -0.96 16 8 C -0.15 -1.47 9.43 -39.47 -0.37 -1.84 16 9 C 0.16 1.68 6.62 -83.61 -0.55 1.12 16 10 N -0.40 -4.06 2.97 -60.89 -0.18 -4.24 16 11 C -0.01 -0.13 10.73 -16.62 -0.18 -0.31 16 12 C -0.19 -1.71 10.86 -39.76 -0.43 -2.14 16 13 C -0.19 -1.70 10.86 -39.76 -0.43 -2.13 16 14 C -0.01 -0.13 10.73 -16.63 -0.18 -0.31 16 15 C -0.15 -1.53 9.43 -39.47 -0.37 -1.90 16 16 C -0.03 -0.37 9.58 -39.22 -0.38 -0.74 16 17 C -0.15 -2.59 6.11 -24.32 -0.15 -2.74 16 18 C 0.17 4.03 5.41 -2.27 -0.01 4.02 16 19 N -0.60 -15.49 3.40 -169.77 -0.58 -16.06 16 20 C -0.22 -6.36 10.24 -15.06 -0.15 -6.51 16 21 H 0.08 2.10 7.85 -52.49 -0.41 1.69 16 22 C -0.01 -0.24 5.40 -17.43 -0.09 -0.34 16 23 N -0.92 -26.75 10.68 55.49 0.59 -26.15 16 24 Si 0.91 22.26 29.56 -169.99 -5.03 17.23 16 25 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 26 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 27 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 28 C 0.14 3.02 6.16 -3.07 -0.02 3.00 16 29 H 0.07 1.24 6.20 -51.93 -0.32 0.92 16 30 H 0.06 0.95 8.12 -51.93 -0.42 0.53 16 31 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.40 5.23 6.50 -40.82 -0.27 4.96 16 33 H 0.14 1.24 6.39 -52.49 -0.34 0.91 16 34 H 0.14 1.05 6.68 -52.49 -0.35 0.70 16 35 H 0.17 1.15 6.99 -52.48 -0.37 0.78 16 36 H 0.14 0.98 8.06 -52.49 -0.42 0.56 16 37 H 0.14 0.97 8.06 -52.48 -0.42 0.54 16 38 H 0.17 1.12 6.99 -52.48 -0.37 0.76 16 39 H 0.14 1.07 6.68 -52.48 -0.35 0.71 16 40 H 0.15 1.68 7.64 -52.48 -0.40 1.28 16 41 H 0.06 0.93 8.06 -51.93 -0.42 0.51 16 42 H 0.08 1.31 8.05 -51.93 -0.42 0.89 16 43 H 0.07 1.82 6.94 -51.93 -0.36 1.46 16 44 H 0.02 0.61 8.07 -51.93 -0.42 0.19 16 45 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 46 H 0.03 0.69 7.80 -51.93 -0.41 0.29 16 47 H 0.03 0.81 6.68 -51.93 -0.35 0.47 16 LS Contribution 377.66 15.07 5.69 5.69 Total: -1.00 -33.61 377.66 -10.22 -43.83 By element: Atomic # 1 Polarization: 11.81 SS G_CDS: -6.36 Total: 5.45 kcal Atomic # 6 Polarization: -0.45 SS G_CDS: -4.19 Total: -4.64 kcal Atomic # 7 Polarization: -57.19 SS G_CDS: -0.40 Total: -57.59 kcal Atomic # 8 Polarization: -10.04 SS G_CDS: 0.07 Total: -9.97 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.03 Total: 17.23 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -33.61 -10.22 -43.83 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046458021.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.852 kcal (2) G-P(sol) polarization free energy of solvation -33.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.828 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds