Wall clock time and date at job start Tue Mar 31 2020 22:43:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46504 * 110.64196 * 2 1 4 4 C 1.34780 * 119.99562 * 300.69777 * 3 2 1 5 5 O 1.21576 * 120.00083 * 359.97438 * 4 3 2 6 6 C 1.47642 * 119.99483 * 180.02562 * 4 3 2 7 7 C 1.39716 * 120.08168 * 0.27396 * 6 4 3 8 8 C 1.37715 * 119.92025 * 180.22962 * 7 6 4 9 9 C 1.39061 * 120.07581 * 359.49793 * 8 7 6 10 10 N 1.39801 * 119.91750 * 180.23472 * 9 8 7 11 11 C 1.36641 * 125.68149 * 359.68884 * 10 9 8 12 12 C 1.34809 * 108.19754 * 179.83324 * 11 10 9 13 13 C 1.40990 * 107.47748 * 0.42354 * 12 11 10 14 14 C 1.34802 * 107.48804 * 359.73532 * 13 12 11 15 15 C 1.39058 * 120.16017 * 0.24934 * 9 8 7 16 16 C 1.37707 * 120.07820 * 0.02562 * 15 9 8 17 17 C 1.55157 * 110.71617 * 123.13449 * 2 1 3 18 18 C 1.55395 * 101.36432 * 153.94936 * 17 2 1 19 19 N 1.47424 * 104.87047 * 323.01855 * 18 17 2 20 20 C 1.36939 * 125.64374 * 204.09594 * 19 18 17 21 21 H 1.08001 * 119.99753 * 169.98927 * 20 19 18 22 22 C 1.38811 * 120.00285 * 349.98060 * 20 19 18 23 23 N 1.31623 * 119.99831 * 350.42509 * 22 20 19 24 24 Si 1.86800 * 120.00173 * 170.42441 * 22 20 19 25 25 H 1.48495 * 109.47304 * 94.14322 * 24 22 20 26 26 H 1.48497 * 109.46872 * 214.14418 * 24 22 20 27 27 H 1.48502 * 109.46902 * 334.14142 * 24 22 20 28 28 C 1.47019 * 108.70421 * 24.13228 * 19 18 17 29 29 H 1.09007 * 109.46803 * 59.30331 * 1 2 3 30 30 H 1.08999 * 109.46698 * 179.30198 * 1 2 3 31 31 H 1.08993 * 109.47423 * 299.30660 * 1 2 3 32 32 H 0.96995 * 119.99884 * 120.69104 * 3 2 1 33 33 H 1.08001 * 120.04257 * 359.97438 * 7 6 4 34 34 H 1.07996 * 119.95939 * 179.76801 * 8 7 6 35 35 H 1.08003 * 125.89918 * 359.97438 * 11 10 9 36 36 H 1.07992 * 126.25929 * 180.13593 * 12 11 10 37 37 H 1.08004 * 126.25143 * 179.71039 * 13 12 11 38 38 H 1.08005 * 125.90570 * 179.97438 * 14 13 12 39 39 H 1.08004 * 119.96066 * 180.02562 * 15 9 8 40 40 H 1.08005 * 120.03820 * 179.97438 * 16 15 9 41 41 H 1.09000 * 111.00995 * 272.11919 * 17 2 1 42 42 H 1.09002 * 111.00534 * 35.97669 * 17 2 1 43 43 H 1.09001 * 110.34013 * 204.17052 * 18 17 2 44 44 H 1.08993 * 110.34500 * 81.87177 * 18 17 2 45 45 H 0.96998 * 119.99909 * 179.97438 * 23 22 20 46 46 H 1.08999 * 109.88222 * 239.51712 * 28 19 18 47 47 H 1.09002 * 109.88048 * 118.35862 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0465 1.3710 0.0000 4 6 1.7264 2.2116 -1.0037 5 8 1.0095 1.8320 -1.9093 6 6 2.2473 3.5931 -1.0040 7 6 3.0769 4.0289 0.0324 8 6 3.5571 5.3196 0.0312 9 6 3.2257 6.1856 -1.0052 10 7 3.7190 7.4937 -1.0055 11 6 4.5259 8.0414 -0.0484 12 6 4.7909 9.3156 -0.3999 13 6 4.1170 9.5693 -1.6121 14 6 3.4698 8.4391 -1.9600 15 6 2.4046 5.7536 -2.0410 16 6 1.9162 4.4661 -2.0435 17 6 2.0789 -0.7933 1.2153 18 6 3.4674 -1.2454 0.6839 19 7 3.2471 -1.5461 -0.7424 20 6 4.0078 -2.3901 -1.5067 21 1 3.6750 -2.6713 -2.4950 22 6 5.2068 -2.8842 -1.0115 23 7 5.7064 -2.4006 0.1060 24 14 6.1112 -4.2355 -1.9311 25 1 7.1221 -3.6289 -2.8339 26 1 6.7894 -5.1284 -0.9574 27 1 5.1408 -5.0236 -2.7328 28 6 2.0761 -0.7892 -1.2084 29 1 -0.3633 0.5247 -0.8837 30 1 -0.3633 -1.0276 -0.0125 31 1 -0.3634 0.5030 0.8961 32 1 2.6187 1.6737 0.7224 33 1 3.3379 3.3557 0.8355 34 1 4.1953 5.6583 0.8339 35 1 4.8905 7.5394 0.8356 36 1 5.4031 10.0155 0.1491 37 1 4.1187 10.4993 -2.1613 38 1 2.8593 8.3043 -2.8407 39 1 2.1497 6.4288 -2.8445 40 1 1.2782 4.1314 -2.8481 41 1 2.1819 -0.1489 2.0883 42 1 1.4469 -1.6528 1.4385 43 1 3.8031 -2.1378 1.2124 44 1 4.1954 -0.4418 0.7942 45 1 6.5440 -2.7461 0.4523 46 1 1.3142 -1.4755 -1.5780 47 1 2.3713 -0.0993 -1.9990 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001046458021.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:43:26 Heat of formation + Delta-G solvation = 61.185542 kcal Electronic energy + Delta-G solvation = -28688.350277 eV Core-core repulsion = 24837.235709 eV Total energy + Delta-G solvation = -3851.114567 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.62533 -41.49510 -39.79428 -38.56970 -35.76723 -34.47138 -33.59388 -32.41785 -31.70903 -30.43051 -29.81764 -29.73481 -27.57076 -25.63212 -24.93406 -24.05680 -22.56062 -22.15713 -21.12300 -20.88891 -20.35082 -19.71749 -19.05876 -18.48149 -17.20481 -16.74914 -16.31749 -16.17921 -15.98332 -15.90001 -15.69776 -15.58601 -15.05729 -14.83014 -14.53569 -14.39827 -14.31311 -14.04738 -13.70824 -13.55067 -13.43636 -13.29304 -13.23028 -13.07369 -12.95676 -12.90832 -12.73330 -12.19074 -12.16813 -12.02483 -11.95005 -11.75132 -11.62244 -10.90950 -10.77794 -10.68624 -10.22655 -10.06728 -9.23348 -9.05925 -8.86358 -7.91019 -5.24133 -0.52661 0.19347 1.20699 1.43939 1.44523 1.54714 1.80144 1.95004 2.04580 2.14591 2.47377 2.78194 3.28026 3.50213 3.54162 3.67822 3.69663 3.75946 3.99498 4.00171 4.08479 4.15190 4.16830 4.27165 4.44177 4.57798 4.61120 4.66927 4.71181 4.78851 4.83449 4.85475 4.90389 4.96678 5.01385 5.04008 5.08450 5.21111 5.30591 5.34002 5.35879 5.41696 5.53267 5.58323 5.64937 5.73129 5.94646 6.19059 6.19870 6.41231 6.57421 7.07734 7.23115 7.74124 8.40269 9.20552 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.014002 B = 0.002534 C = 0.002332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1999.263507 B =11046.462854 C =12003.652088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.171 3.829 3 N -0.698 5.698 4 C 0.557 3.443 5 O -0.569 6.569 6 C -0.162 4.162 7 C -0.051 4.051 8 C -0.147 4.147 9 C 0.158 3.842 10 N -0.407 5.407 11 C -0.028 4.028 12 C -0.201 4.201 13 C -0.200 4.200 14 C -0.030 4.030 15 C -0.149 4.149 16 C -0.038 4.038 17 C -0.129 4.129 18 C 0.178 3.822 19 N -0.622 5.622 20 C -0.248 4.248 21 H 0.068 0.932 22 C -0.057 4.057 23 N -0.942 5.942 24 Si 0.975 3.025 25 H -0.288 1.288 26 H -0.287 1.287 27 H -0.273 1.273 28 C 0.135 3.865 29 H 0.059 0.941 30 H 0.071 0.929 31 H 0.079 0.921 32 H 0.409 0.591 33 H 0.154 0.846 34 H 0.160 0.840 35 H 0.186 0.814 36 H 0.158 0.842 37 H 0.157 0.843 38 H 0.184 0.816 39 H 0.156 0.844 40 H 0.140 0.860 41 H 0.105 0.895 42 H 0.088 0.912 43 H 0.038 0.962 44 H 0.005 0.995 45 H 0.250 0.750 46 H 0.025 0.975 47 H 0.005 0.995 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.877 22.226 4.105 23.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.084 3.916 3 N -0.350 5.350 4 C 0.345 3.655 5 O -0.450 6.450 6 C -0.166 4.166 7 C -0.070 4.070 8 C -0.167 4.167 9 C 0.065 3.935 10 N -0.080 5.080 11 C -0.154 4.154 12 C -0.224 4.224 13 C -0.223 4.223 14 C -0.156 4.156 15 C -0.169 4.169 16 C -0.058 4.058 17 C -0.167 4.167 18 C 0.053 3.947 19 N -0.348 5.348 20 C -0.377 4.377 21 H 0.086 0.914 22 C -0.251 4.251 23 N -0.590 5.590 24 Si 0.803 3.197 25 H -0.215 1.215 26 H -0.213 1.213 27 H -0.198 1.198 28 C 0.009 3.991 29 H 0.078 0.922 30 H 0.090 0.910 31 H 0.097 0.903 32 H 0.246 0.754 33 H 0.171 0.829 34 H 0.178 0.822 35 H 0.203 0.797 36 H 0.175 0.825 37 H 0.175 0.825 38 H 0.201 0.799 39 H 0.174 0.826 40 H 0.158 0.842 41 H 0.123 0.877 42 H 0.107 0.893 43 H 0.056 0.944 44 H 0.023 0.977 45 H 0.059 0.941 46 H 0.043 0.957 47 H 0.023 0.977 Dipole moment (debyes) X Y Z Total from point charges -7.295 21.574 3.495 23.041 hybrid contribution 1.151 -0.766 -0.500 1.470 sum -6.144 20.809 2.995 21.903 Atomic orbital electron populations 1.21979 0.91949 1.02983 1.03103 1.21177 0.94466 0.80537 0.95395 1.45825 1.51684 1.11585 1.25867 1.18477 0.79939 0.85589 0.81455 1.90715 1.39280 1.78162 1.36850 1.20008 1.03760 0.93701 0.99093 1.21372 0.93089 0.95603 0.96913 1.20985 1.03362 0.93035 0.99291 1.18262 0.95520 0.83505 0.96260 1.41792 1.38148 1.07928 1.20089 1.22437 1.00253 0.95720 0.96941 1.21382 1.05672 0.96271 0.99111 1.21377 1.02742 0.99043 0.99181 1.22411 1.07117 0.88952 0.97095 1.20928 0.99813 0.96770 0.99343 1.21160 0.96198 0.91806 0.96612 1.23316 0.97208 1.00049 0.96145 1.21334 0.92405 0.97331 0.83599 1.44763 1.31296 1.50853 1.07913 1.19315 1.00347 1.19354 0.98685 0.91427 1.25565 0.97578 1.02734 0.99225 1.70110 1.20668 1.44810 1.23417 0.85137 0.78245 0.78913 0.77449 1.21535 1.21285 1.19791 1.21698 0.89239 0.92694 0.95504 0.92246 0.91049 0.90251 0.75392 0.82859 0.82234 0.79691 0.82476 0.82495 0.79909 0.82616 0.84193 0.87671 0.89311 0.94377 0.97741 0.94112 0.95682 0.97695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.10 8.41 71.98 0.61 -3.49 16 2 C 0.17 5.80 0.80 4.79 0.00 5.81 16 3 N -0.70 -21.12 5.10 -420.57 -2.14 -23.26 16 4 C 0.56 17.94 6.98 86.73 0.61 18.55 16 5 O -0.57 -22.09 13.28 -3.95 -0.05 -22.14 16 6 C -0.16 -4.17 5.88 -20.08 -0.12 -4.29 16 7 C -0.05 -1.02 9.53 22.50 0.21 -0.81 16 8 C -0.15 -2.62 9.43 22.34 0.21 -2.41 16 9 C 0.16 3.06 6.62 38.26 0.25 3.31 16 10 N -0.41 -7.50 2.97 -346.56 -1.03 -8.53 16 11 C -0.03 -0.46 10.73 83.16 0.89 0.43 16 12 C -0.20 -3.19 10.86 22.16 0.24 -2.95 16 13 C -0.20 -3.18 10.86 22.16 0.24 -2.94 16 14 C -0.03 -0.51 10.73 83.15 0.89 0.39 16 15 C -0.15 -2.87 9.43 22.34 0.21 -2.66 16 16 C -0.04 -0.90 9.58 22.50 0.22 -0.68 16 17 C -0.13 -4.23 6.11 32.16 0.20 -4.03 16 18 C 0.18 8.33 5.41 87.03 0.47 8.80 16 19 N -0.62 -32.80 3.40 -691.04 -2.35 -35.15 16 20 C -0.25 -14.45 10.24 84.03 0.86 -13.59 16 21 H 0.07 3.91 7.85 -2.91 -0.02 3.89 16 22 C -0.06 -3.28 5.40 84.86 0.46 -2.83 16 23 N -0.94 -55.73 10.68 21.65 0.23 -55.50 16 24 Si 0.97 46.37 29.56 68.60 2.03 48.40 16 25 H -0.29 -13.59 7.11 99.48 0.71 -12.89 16 26 H -0.29 -13.41 7.11 99.48 0.71 -12.70 16 27 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16 28 C 0.13 6.13 6.16 86.73 0.53 6.66 16 29 H 0.06 1.94 6.20 -2.38 -0.01 1.92 16 30 H 0.07 1.96 8.12 -2.39 -0.02 1.94 16 31 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 32 H 0.41 10.12 6.50 -92.71 -0.60 9.51 16 33 H 0.15 2.46 6.39 -2.91 -0.02 2.44 16 34 H 0.16 1.99 6.68 -2.91 -0.02 1.97 16 35 H 0.19 2.06 6.99 -2.91 -0.02 2.04 16 36 H 0.16 1.84 8.06 -2.91 -0.02 1.81 16 37 H 0.16 1.83 8.06 -2.91 -0.02 1.81 16 38 H 0.18 2.13 6.99 -2.91 -0.02 2.11 16 39 H 0.16 2.21 6.68 -2.91 -0.02 2.19 16 40 H 0.14 3.36 7.64 -2.91 -0.02 3.34 16 41 H 0.10 2.64 8.06 -2.39 -0.02 2.62 16 42 H 0.09 2.77 8.05 -2.39 -0.02 2.75 16 43 H 0.04 2.01 6.94 -2.39 -0.02 1.99 16 44 H 0.00 0.23 8.07 -2.39 -0.02 0.21 16 45 H 0.25 14.28 8.31 -92.71 -0.77 13.51 16 46 H 0.03 1.16 7.80 -2.39 -0.02 1.14 16 47 H 0.01 0.26 6.68 -2.39 -0.02 0.24 16 Total: -1.00 -75.10 377.66 4.07 -71.03 By element: Atomic # 1 Polarization: 21.47 SS G_CDS: 0.39 Total: 21.87 kcal Atomic # 6 Polarization: -3.71 SS G_CDS: 6.99 Total: 3.27 kcal Atomic # 7 Polarization: -117.14 SS G_CDS: -5.29 Total: -122.43 kcal Atomic # 8 Polarization: -22.09 SS G_CDS: -0.05 Total: -22.14 kcal Atomic # 14 Polarization: 46.37 SS G_CDS: 2.03 Total: 48.40 kcal Total: -75.10 4.07 -71.03 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046458021.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.216 kcal (2) G-P(sol) polarization free energy of solvation -75.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.030 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds