Wall clock time and date at job start Tue Mar 31 2020 22:43:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46500 * 110.91697 * 2 1 4 4 C 1.34773 * 119.99841 * 56.09677 * 3 2 1 5 5 O 1.21581 * 120.00422 * 0.02562 * 4 3 2 6 6 C 1.47642 * 119.99782 * 179.97438 * 4 3 2 7 7 C 1.39721 * 120.08080 * 359.72608 * 6 4 3 8 8 C 1.37708 * 119.92135 * 179.80841 * 7 6 4 9 9 C 1.39057 * 120.07906 * 0.44482 * 8 7 6 10 10 N 1.39807 * 119.91975 * 179.76526 * 9 8 7 11 11 C 1.36637 * 125.67304 * 179.71699 * 10 9 8 12 12 C 1.34811 * 108.19239 * 179.89279 * 11 10 9 13 13 C 1.40983 * 107.48328 * 0.35992 * 12 11 10 14 14 C 1.34811 * 107.48227 * 359.78025 * 13 12 11 15 15 C 1.39057 * 120.15825 * 359.78638 * 9 8 7 16 16 C 1.37712 * 120.07938 * 0.02562 * 15 9 8 17 17 C 1.55157 * 111.00143 * 236.09886 * 2 1 3 18 18 C 1.54325 * 102.94184 * 206.42607 * 17 2 1 19 19 N 1.47022 * 107.26948 * 22.19107 * 18 17 2 20 20 C 1.36945 * 125.64832 * 181.02381 * 19 18 17 21 21 H 1.07997 * 119.99756 * 180.02562 * 20 19 18 22 22 C 1.38805 * 119.99878 * 0.02562 * 20 19 18 23 23 N 1.31624 * 120.00257 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 119.99929 * 179.97438 * 22 20 19 25 25 H 1.48496 * 109.47187 * 179.97438 * 24 22 20 26 26 H 1.48494 * 109.47141 * 300.00154 * 24 22 20 27 27 H 1.48498 * 109.47018 * 60.00200 * 24 22 20 28 28 C 1.47423 * 108.70390 * 1.29074 * 19 18 17 29 29 H 1.08996 * 109.47690 * 183.89832 * 1 2 3 30 30 H 1.08999 * 109.46882 * 303.90238 * 1 2 3 31 31 H 1.09005 * 109.47260 * 63.90076 * 1 2 3 32 32 H 0.97003 * 119.99983 * 236.09806 * 3 2 1 33 33 H 1.08002 * 120.03597 * 359.97438 * 7 6 4 34 34 H 1.08002 * 119.95851 * 180.21021 * 8 7 6 35 35 H 1.08001 * 125.90691 * 359.97438 * 11 10 9 36 36 H 1.08005 * 126.26210 * 180.14130 * 12 11 10 37 37 H 1.08003 * 126.26334 * 179.75114 * 13 12 11 38 38 H 1.08002 * 125.90412 * 180.02562 * 14 13 12 39 39 H 1.08006 * 119.96226 * 179.97438 * 15 9 8 40 40 H 1.07997 * 120.03800 * 179.97438 * 16 15 9 41 41 H 1.09000 * 110.72140 * 88.06437 * 17 2 1 42 42 H 1.08998 * 110.72520 * 324.78756 * 17 2 1 43 43 H 1.09002 * 109.88274 * 262.77538 * 18 17 2 44 44 H 1.08996 * 109.88444 * 141.60894 * 18 17 2 45 45 H 0.97001 * 119.99885 * 179.97438 * 23 22 20 46 46 H 1.09000 * 110.37068 * 94.48354 * 28 19 18 47 47 H 1.09005 * 110.36651 * 216.80519 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0530 1.3685 0.0000 4 6 1.6855 2.2303 0.9687 5 8 0.9202 1.8721 1.8429 6 6 2.2130 3.6093 0.9691 7 6 3.0979 4.0208 -0.0309 8 6 3.5848 5.3089 -0.0297 9 6 3.2042 6.1969 0.9704 10 7 3.7044 7.5025 0.9712 11 6 3.4061 8.4695 1.8892 12 6 4.0809 9.5882 1.5565 13 6 4.8166 9.3070 0.3871 14 6 4.5683 8.0254 0.0508 15 6 2.3275 5.7895 1.9699 16 6 1.8335 4.5040 1.9728 17 6 2.0861 -0.8079 -1.2023 18 6 3.4674 -1.2742 -0.6961 19 7 3.4270 -1.2431 0.7733 20 6 4.4640 -1.5668 1.6072 21 1 4.3332 -1.5120 2.6778 22 6 5.6830 -1.9654 1.0763 23 7 5.8425 -2.0318 -0.2285 24 14 7.0977 -2.4063 2.2138 25 1 8.2800 -2.7972 1.4048 26 1 7.4398 -1.2322 3.0562 27 1 6.6975 -3.5406 3.0847 28 6 2.0835 -0.8120 1.2003 29 1 -0.3634 -1.0252 0.0699 30 1 -0.3633 0.5732 0.8529 31 1 -0.3634 0.4521 -0.9229 32 1 2.6639 1.6542 -0.6973 33 1 3.3974 3.3302 -0.8053 34 1 4.2662 5.6286 -0.8043 35 1 2.7452 8.3568 2.7359 36 1 4.0590 10.5289 2.0866 37 1 5.4609 9.9931 -0.1427 38 1 4.9813 7.5022 -0.7990 39 1 2.0342 6.4817 2.7454 40 1 1.1530 4.1881 2.7497 41 1 2.1922 -0.1699 -2.0797 42 1 1.4467 -1.6632 -1.4210 43 1 4.2426 -0.5999 -1.0600 44 1 3.6649 -2.2894 -1.0401 45 1 6.6945 -2.3100 -0.5994 46 1 1.4523 -1.6782 1.3988 47 1 2.1515 -0.1802 2.0860 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001046458022.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:43:31 Heat of formation + Delta-G solvation = 80.731134 kcal Electronic energy + Delta-G solvation = -28879.697076 eV Core-core repulsion = 25029.430069 eV Total energy + Delta-G solvation = -3850.267007 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.88916 -40.21632 -38.67801 -37.13154 -34.03522 -33.49121 -32.08198 -31.38079 -30.18383 -29.10212 -28.99229 -28.58456 -25.67944 -24.34280 -23.57451 -23.18432 -21.40260 -20.32503 -20.26148 -20.02135 -19.05893 -18.85411 -17.72790 -16.72575 -15.79948 -15.29292 -15.27726 -15.06518 -14.73213 -14.66954 -14.60921 -14.14595 -13.81378 -13.74651 -13.60357 -13.28551 -12.91424 -12.67815 -12.60971 -12.56335 -12.26497 -12.01783 -11.94058 -11.82199 -11.67155 -11.33933 -10.91261 -10.87612 -10.42240 -10.38439 -10.12758 -10.07065 -10.02393 -9.67013 -9.36912 -9.36335 -8.70511 -8.56148 -8.53827 -8.22486 -6.81387 -5.71763 -3.03723 0.39020 1.04942 2.03864 2.54761 2.72764 3.00727 3.38768 3.41111 3.44985 3.46223 3.79560 4.33264 4.44304 4.50355 4.69672 4.74929 4.84787 4.93448 5.01584 5.10932 5.19783 5.30984 5.36520 5.44393 5.46170 5.60412 5.64866 5.70960 5.74517 5.88140 5.96005 6.01129 6.04243 6.09928 6.13421 6.16870 6.34208 6.38087 6.40964 6.52434 6.62423 6.67148 6.78494 6.90662 7.08943 7.14538 7.52490 7.54267 7.78177 7.84742 8.25105 8.49360 9.22692 9.82650 10.48448 11.40205 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.011420 B = 0.002925 C = 0.002550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2451.184094 B = 9571.108153 C =10979.708284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.157 3.843 3 N -0.694 5.694 4 C 0.561 3.439 5 O -0.537 6.537 6 C -0.138 4.138 7 C -0.053 4.053 8 C -0.147 4.147 9 C 0.158 3.842 10 N -0.397 5.397 11 C -0.014 4.014 12 C -0.191 4.191 13 C -0.191 4.191 14 C -0.013 4.013 15 C -0.150 4.150 16 C -0.031 4.031 17 C -0.147 4.147 18 C 0.177 3.823 19 N -0.603 5.603 20 C -0.222 4.222 21 H 0.076 0.924 22 C -0.009 4.009 23 N -0.925 5.925 24 Si 0.910 3.090 25 H -0.290 1.290 26 H -0.286 1.286 27 H -0.285 1.285 28 C 0.133 3.867 29 H 0.063 0.937 30 H 0.078 0.922 31 H 0.049 0.951 32 H 0.397 0.603 33 H 0.137 0.863 34 H 0.135 0.865 35 H 0.166 0.834 36 H 0.141 0.859 37 H 0.141 0.859 38 H 0.166 0.834 39 H 0.135 0.865 40 H 0.146 0.854 41 H 0.064 0.936 42 H 0.074 0.926 43 H 0.045 0.955 44 H 0.044 0.956 45 H 0.252 0.748 46 H 0.027 0.973 47 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.560 19.059 -2.588 20.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.070 3.930 3 N -0.344 5.344 4 C 0.348 3.652 5 O -0.416 6.416 6 C -0.141 4.141 7 C -0.073 4.073 8 C -0.167 4.167 9 C 0.065 3.935 10 N -0.069 5.069 11 C -0.141 4.141 12 C -0.215 4.215 13 C -0.215 4.215 14 C -0.140 4.140 15 C -0.170 4.170 16 C -0.051 4.051 17 C -0.186 4.186 18 C 0.052 3.948 19 N -0.329 5.329 20 C -0.351 4.351 21 H 0.093 0.907 22 C -0.205 4.205 23 N -0.573 5.573 24 Si 0.741 3.259 25 H -0.216 1.216 26 H -0.213 1.213 27 H -0.212 1.212 28 C 0.006 3.994 29 H 0.082 0.918 30 H 0.097 0.903 31 H 0.068 0.932 32 H 0.233 0.767 33 H 0.155 0.845 34 H 0.153 0.847 35 H 0.183 0.817 36 H 0.158 0.842 37 H 0.159 0.841 38 H 0.184 0.816 39 H 0.153 0.847 40 H 0.163 0.837 41 H 0.082 0.918 42 H 0.092 0.908 43 H 0.063 0.937 44 H 0.062 0.938 45 H 0.062 0.938 46 H 0.045 0.955 47 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -7.961 18.428 -2.002 20.174 hybrid contribution 1.341 -0.101 0.162 1.354 sum -6.621 18.327 -1.840 19.573 Atomic orbital electron populations 1.22045 0.94126 1.02476 1.02534 1.21544 0.92761 0.80473 0.98212 1.45725 1.48191 1.11859 1.28598 1.17984 0.81060 0.84453 0.81737 1.90712 1.36023 1.78252 1.36628 1.20149 1.01122 0.95055 0.97823 1.21222 0.93819 0.95034 0.97176 1.20719 1.03262 0.93437 0.99273 1.18058 0.95857 0.83088 0.96502 1.41657 1.35201 1.07865 1.22185 1.21951 1.06068 0.88523 0.97533 1.21018 1.02293 0.98499 0.99697 1.21021 1.05187 0.95673 0.99641 1.21972 0.99064 0.95518 0.97407 1.20758 0.99706 0.97381 0.99163 1.21118 0.96352 0.91020 0.96581 1.23243 1.00543 0.98963 0.95863 1.21159 0.89931 0.99962 0.83714 1.44439 1.07649 1.79059 1.01785 1.19012 0.89384 1.37693 0.88967 0.90662 1.24754 0.97738 1.01973 0.96014 1.69935 1.24212 1.54005 1.09163 0.86215 0.81867 0.78305 0.79509 1.21616 1.21263 1.21194 1.21922 0.87614 0.94868 0.94999 0.91837 0.90272 0.93215 0.76745 0.84493 0.84678 0.81699 0.84151 0.84129 0.81639 0.84725 0.83661 0.91768 0.90752 0.93673 0.93791 0.93818 0.95545 0.93181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.33 8.59 37.16 0.32 -2.01 16 2 C 0.16 2.73 0.82 -129.55 -0.11 2.62 16 3 N -0.69 -11.12 5.14 -46.51 -0.24 -11.36 16 4 C 0.56 9.20 7.15 -12.42 -0.09 9.11 16 5 O -0.54 -10.15 13.17 5.29 0.07 -10.08 16 6 C -0.14 -1.87 5.88 -104.95 -0.62 -2.49 16 7 C -0.05 -0.62 9.53 -39.22 -0.37 -0.99 16 8 C -0.15 -1.56 9.43 -39.47 -0.37 -1.93 16 9 C 0.16 1.75 6.62 -83.61 -0.55 1.19 16 10 N -0.40 -4.23 2.97 -60.89 -0.18 -4.41 16 11 C -0.01 -0.14 10.73 -16.63 -0.18 -0.32 16 12 C -0.19 -1.77 10.86 -39.76 -0.43 -2.20 16 13 C -0.19 -1.79 10.86 -39.76 -0.43 -2.22 16 14 C -0.01 -0.13 10.73 -16.63 -0.18 -0.31 16 15 C -0.15 -1.60 9.43 -39.47 -0.37 -1.97 16 16 C -0.03 -0.38 9.58 -39.22 -0.38 -0.76 16 17 C -0.15 -2.55 5.97 -24.90 -0.15 -2.70 16 18 C 0.18 4.10 5.36 -3.06 -0.02 4.08 16 19 N -0.60 -15.28 3.39 -169.94 -0.58 -15.86 16 20 C -0.22 -6.25 10.28 -15.06 -0.15 -6.40 16 21 H 0.08 2.09 7.83 -52.49 -0.41 1.68 16 22 C -0.01 -0.26 5.49 -17.43 -0.10 -0.35 16 23 N -0.93 -26.71 10.31 55.49 0.57 -26.14 16 24 Si 0.91 22.31 29.55 -169.99 -5.02 17.29 16 25 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 26 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 27 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 28 C 0.13 2.89 6.18 -2.41 -0.01 2.87 16 29 H 0.06 0.90 8.07 -51.93 -0.42 0.48 16 30 H 0.08 1.31 5.92 -51.93 -0.31 1.00 16 31 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.40 5.63 6.53 -40.82 -0.27 5.37 16 33 H 0.14 1.38 6.39 -52.49 -0.34 1.05 16 34 H 0.14 1.14 6.68 -52.49 -0.35 0.79 16 35 H 0.17 1.18 6.99 -52.49 -0.37 0.81 16 36 H 0.14 1.01 8.06 -52.48 -0.42 0.58 16 37 H 0.14 1.03 8.06 -52.48 -0.42 0.61 16 38 H 0.17 1.23 6.99 -52.49 -0.37 0.86 16 39 H 0.13 1.11 6.68 -52.48 -0.35 0.76 16 40 H 0.15 1.72 7.64 -52.49 -0.40 1.32 16 41 H 0.06 0.95 8.09 -51.93 -0.42 0.53 16 42 H 0.07 1.21 8.04 -51.93 -0.42 0.79 16 43 H 0.05 1.13 7.38 -51.93 -0.38 0.75 16 44 H 0.04 1.14 7.51 -51.93 -0.39 0.75 16 45 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 46 H 0.03 0.58 7.99 -51.93 -0.41 0.16 16 47 H 0.05 1.17 6.88 -51.93 -0.36 0.82 16 LS Contribution 377.50 15.07 5.69 5.69 Total: -1.00 -33.10 377.50 -10.24 -43.34 By element: Atomic # 1 Polarization: 12.67 SS G_CDS: -6.36 Total: 6.31 kcal Atomic # 6 Polarization: -0.58 SS G_CDS: -4.19 Total: -4.77 kcal Atomic # 7 Polarization: -57.35 SS G_CDS: -0.42 Total: -57.77 kcal Atomic # 8 Polarization: -10.15 SS G_CDS: 0.07 Total: -10.08 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -5.02 Total: 17.29 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -33.10 -10.24 -43.34 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046458022.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.074 kcal (2) G-P(sol) polarization free energy of solvation -33.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.343 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds