Wall clock time and date at job start Tue Mar 31 2020 22:43:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46494 * 110.91809 * 2 1 4 4 C 1.34774 * 120.00081 * 303.90144 * 3 2 1 5 5 O 1.21550 * 120.00078 * 0.02562 * 4 3 2 6 6 C 1.47862 * 120.00195 * 179.97438 * 4 3 2 7 7 C 1.39621 * 120.10886 * 359.72685 * 6 4 3 8 8 C 1.37979 * 119.98376 * 179.74232 * 7 6 4 9 9 C 1.38270 * 120.21297 * 0.55624 * 8 7 6 10 10 C 1.38903 * 120.23211 * 359.69621 * 9 8 7 11 11 N 1.40219 * 119.99672 * 180.02562 * 10 9 8 12 12 C 1.36570 * 125.66706 * 179.66705 * 11 10 9 13 13 C 1.34861 * 108.19705 * 179.88982 * 12 11 10 14 14 C 1.40942 * 107.46900 * 0.37160 * 13 12 11 15 15 C 1.34858 * 107.46473 * 359.76931 * 14 13 12 16 16 C 1.38589 * 120.00841 * 0.02562 * 10 9 8 17 17 C 1.55157 * 111.00230 * 123.90532 * 2 1 3 18 18 C 1.54321 * 103.10033 * 153.66249 * 17 2 1 19 19 N 1.47019 * 107.27531 * 337.71659 * 18 17 2 20 20 C 1.36934 * 125.65046 * 178.97751 * 19 18 17 21 21 H 1.08001 * 119.99839 * 179.97438 * 20 19 18 22 22 C 1.38816 * 120.00199 * 359.97423 * 20 19 18 23 23 N 1.31622 * 119.99707 * 359.97438 * 22 20 19 24 24 Si 1.86796 * 120.00112 * 180.02562 * 22 20 19 25 25 H 1.48496 * 109.47000 * 60.00290 * 24 22 20 26 26 H 1.48504 * 109.47170 * 179.97438 * 24 22 20 27 27 H 1.48502 * 109.47305 * 299.99926 * 24 22 20 28 28 C 1.47431 * 108.70142 * 358.94050 * 19 18 17 29 29 H 1.08998 * 109.47366 * 296.10172 * 1 2 3 30 30 H 1.09006 * 109.46883 * 56.09371 * 1 2 3 31 31 H 1.08999 * 109.47315 * 176.09315 * 1 2 3 32 32 H 0.97003 * 120.00141 * 123.90560 * 3 2 1 33 33 H 1.07992 * 120.00901 * 0.02562 * 7 6 4 34 34 H 1.07995 * 119.89603 * 180.27530 * 8 7 6 35 35 H 1.08003 * 119.88146 * 179.71954 * 9 8 7 36 36 H 1.08000 * 125.90197 * 0.02562 * 12 11 10 37 37 H 1.08001 * 126.26052 * 180.13946 * 13 12 11 38 38 H 1.08000 * 126.26434 * 179.76374 * 14 13 12 39 39 H 1.07998 * 125.89390 * 179.97438 * 15 14 13 40 40 H 1.08002 * 120.10877 * 179.97438 * 16 10 9 41 41 H 1.09002 * 110.72219 * 35.20946 * 17 2 1 42 42 H 1.09003 * 110.71618 * 272.11558 * 17 2 1 43 43 H 1.09001 * 109.88480 * 97.13771 * 18 17 2 44 44 H 1.09004 * 109.87910 * 218.29695 * 18 17 2 45 45 H 0.96993 * 119.99930 * 179.97438 * 23 22 20 46 46 H 1.08999 * 110.36190 * 142.96411 * 28 19 18 47 47 H 1.08998 * 110.36491 * 265.18090 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0530 1.3684 0.0000 4 6 1.6855 2.2303 -0.9687 5 8 0.9197 1.8724 -1.8422 6 6 2.2130 3.6116 -0.9685 7 6 3.0874 4.0272 0.0375 8 6 3.5823 5.3152 0.0323 9 6 3.2060 6.2011 -0.9604 10 6 2.3325 5.7987 -1.9626 11 7 1.9547 6.7010 -2.9672 12 6 1.1120 6.4283 -4.0067 13 6 0.9927 7.5433 -4.7559 14 6 1.7961 8.5386 -4.1640 15 6 2.3729 7.9968 -3.0720 16 6 1.8343 4.5055 -1.9697 17 6 2.0861 -0.8080 1.2022 18 6 3.4690 -1.2743 0.7005 19 7 3.4326 -1.2462 -0.7689 20 6 4.4719 -1.5708 -1.5994 21 1 4.3440 -1.5181 -2.6705 22 6 5.6899 -1.9675 -1.0645 23 7 5.8460 -2.0312 0.2409 24 14 7.1079 -2.4096 -2.1973 25 1 7.4515 -1.2369 -3.0410 26 1 8.2887 -2.7969 -1.3844 27 1 6.7108 -3.5459 -3.0671 28 6 2.0916 -0.8114 -1.2004 29 1 -0.3634 0.4521 0.9228 30 1 -0.3633 0.5733 -0.8530 31 1 -0.3634 -1.0252 -0.0700 32 1 2.6639 1.6541 0.6972 33 1 3.3801 3.3394 0.8169 34 1 4.2621 5.6338 0.8086 35 1 3.5931 7.2094 -0.9567 36 1 0.6237 5.4835 -4.1950 37 1 0.3942 7.6523 -5.6483 38 1 1.9260 9.5500 -4.5200 39 1 3.0491 8.5006 -2.3973 40 1 1.1546 4.1910 -2.7479 41 1 1.4467 -1.6632 1.4209 42 1 2.1892 -0.1707 2.0805 43 1 4.2428 -0.5987 1.0652 44 1 3.6663 -2.2888 1.0472 45 1 6.6969 -2.3087 0.6146 46 1 2.1643 -0.1785 -2.0847 47 1 1.4599 -1.6760 -1.4043 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001046463219.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:43:34 Heat of formation + Delta-G solvation = 81.100475 kcal Electronic energy + Delta-G solvation = -29059.728225 eV Core-core repulsion = 25209.477234 eV Total energy + Delta-G solvation = -3850.250991 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.81027 -40.22632 -38.68478 -37.15167 -34.10011 -33.46646 -32.07997 -31.39801 -30.04454 -29.03408 -28.89903 -28.62305 -25.69630 -24.47357 -23.57742 -23.22517 -21.47474 -20.35071 -20.23979 -19.85785 -19.11067 -18.81086 -17.09602 -16.56512 -16.28054 -15.74734 -15.23423 -15.05738 -14.68380 -14.64285 -14.58995 -14.18290 -13.76839 -13.71431 -13.66400 -13.27373 -12.87857 -12.67379 -12.52172 -12.38268 -12.09245 -12.02348 -11.89089 -11.83265 -11.68890 -11.55137 -10.92052 -10.88069 -10.43521 -10.39189 -10.13458 -10.09604 -10.04768 -9.67901 -9.41157 -9.28689 -8.71163 -8.55978 -8.44883 -8.23266 -6.82204 -5.72446 -3.04391 0.53104 0.83998 2.17143 2.58471 2.80834 2.97674 3.34621 3.40595 3.44582 3.45942 3.76611 4.41553 4.46694 4.49966 4.67787 4.82937 4.89226 4.90167 5.00741 5.08696 5.25878 5.32379 5.35686 5.44448 5.48142 5.58851 5.59445 5.69700 5.75729 5.95773 6.00794 6.05105 6.05439 6.10352 6.12339 6.13967 6.32694 6.37005 6.39418 6.50877 6.65395 6.71002 6.77165 6.98542 7.06298 7.21762 7.51785 7.53355 7.76966 7.81479 8.24349 8.44448 9.22042 9.81889 10.47693 11.39552 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.012214 B = 0.002964 C = 0.002709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2291.918346 B = 9445.404951 C =10334.663916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.156 3.844 3 N -0.692 5.692 4 C 0.560 3.440 5 O -0.534 6.534 6 C -0.095 4.095 7 C -0.096 4.096 8 C -0.096 4.096 9 C -0.121 4.121 10 C 0.129 3.871 11 N -0.395 5.395 12 C -0.011 4.011 13 C -0.193 4.193 14 C -0.192 4.192 15 C -0.018 4.018 16 C -0.082 4.082 17 C -0.147 4.147 18 C 0.177 3.823 19 N -0.603 5.603 20 C -0.223 4.223 21 H 0.076 0.924 22 C -0.009 4.009 23 N -0.925 5.925 24 Si 0.911 3.089 25 H -0.286 1.286 26 H -0.290 1.290 27 H -0.285 1.285 28 C 0.133 3.867 29 H 0.049 0.951 30 H 0.078 0.922 31 H 0.063 0.937 32 H 0.398 0.602 33 H 0.135 0.865 34 H 0.138 0.862 35 H 0.133 0.867 36 H 0.167 0.833 37 H 0.141 0.859 38 H 0.140 0.860 39 H 0.164 0.836 40 H 0.144 0.856 41 H 0.074 0.926 42 H 0.064 0.936 43 H 0.045 0.955 44 H 0.044 0.956 45 H 0.252 0.748 46 H 0.049 0.951 47 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.659 18.321 1.421 20.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.070 3.930 3 N -0.341 5.341 4 C 0.346 3.654 5 O -0.413 6.413 6 C -0.099 4.099 7 C -0.115 4.115 8 C -0.114 4.114 9 C -0.141 4.141 10 C 0.037 3.963 11 N -0.067 5.067 12 C -0.138 4.138 13 C -0.217 4.217 14 C -0.216 4.216 15 C -0.144 4.144 16 C -0.103 4.103 17 C -0.186 4.186 18 C 0.052 3.948 19 N -0.329 5.329 20 C -0.351 4.351 21 H 0.093 0.907 22 C -0.205 4.205 23 N -0.573 5.573 24 Si 0.741 3.259 25 H -0.213 1.213 26 H -0.216 1.216 27 H -0.212 1.212 28 C 0.006 3.994 29 H 0.068 0.932 30 H 0.097 0.903 31 H 0.082 0.918 32 H 0.234 0.766 33 H 0.152 0.848 34 H 0.156 0.844 35 H 0.150 0.850 36 H 0.184 0.816 37 H 0.158 0.842 38 H 0.158 0.842 39 H 0.181 0.819 40 H 0.161 0.839 41 H 0.093 0.907 42 H 0.082 0.918 43 H 0.063 0.937 44 H 0.063 0.937 45 H 0.062 0.938 46 H 0.067 0.933 47 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -8.896 17.761 1.039 19.891 hybrid contribution 1.288 -0.117 -0.224 1.312 sum -7.608 17.644 0.814 19.232 Atomic orbital electron populations 1.22035 0.94039 1.02526 1.02550 1.21613 0.92783 0.80341 0.98299 1.45718 1.48094 1.11859 1.28474 1.17996 0.81157 0.84395 0.81862 1.90710 1.35810 1.78177 1.36598 1.19909 0.99319 0.94383 0.96249 1.21447 0.95707 0.96489 0.97873 1.20957 0.99370 0.92911 0.98208 1.20962 0.98022 1.00868 0.94256 1.17742 0.98634 0.89676 0.90283 1.41641 1.35773 1.09532 1.19754 1.22028 0.99676 1.01278 0.90785 1.20999 1.05150 0.93270 1.02315 1.20987 1.02725 1.00154 0.97712 1.21876 1.05844 0.84204 1.02513 1.20859 0.99869 0.90419 0.99141 1.23242 1.00548 0.98967 0.95833 1.21162 0.89887 0.99990 0.83730 1.44425 1.07750 1.78936 1.01785 1.19013 0.89323 1.37756 0.89005 0.90657 1.24756 0.97729 1.01964 0.96012 1.69931 1.24322 1.53999 1.09053 0.86213 0.81869 0.78319 0.79479 1.21263 1.21612 1.21172 1.21955 0.87660 0.94862 0.94881 0.93159 0.90297 0.91777 0.76618 0.84752 0.84371 0.84956 0.81572 0.84158 0.84237 0.81863 0.83878 0.90737 0.91758 0.93664 0.93747 0.93806 0.93268 0.95521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.31 8.60 37.16 0.32 -1.99 16 2 C 0.16 2.71 0.83 -129.41 -0.11 2.60 16 3 N -0.69 -11.05 5.13 -46.31 -0.24 -11.29 16 4 C 0.56 9.24 7.15 -12.32 -0.09 9.15 16 5 O -0.53 -10.17 13.19 5.32 0.07 -10.10 16 6 C -0.09 -1.31 5.87 -104.99 -0.62 -1.93 16 7 C -0.10 -1.09 9.54 -39.16 -0.37 -1.46 16 8 C -0.10 -0.91 10.03 -39.66 -0.40 -1.30 16 9 C -0.12 -1.19 9.45 -39.32 -0.37 -1.57 16 10 C 0.13 1.53 6.61 -83.64 -0.55 0.98 16 11 N -0.40 -4.61 2.97 -60.96 -0.18 -4.79 16 12 C -0.01 -0.12 10.73 -16.64 -0.18 -0.30 16 13 C -0.19 -2.04 10.86 -39.76 -0.43 -2.47 16 14 C -0.19 -1.91 10.86 -39.76 -0.43 -2.34 16 15 C -0.02 -0.18 10.73 -16.64 -0.18 -0.36 16 16 C -0.08 -1.10 9.00 -39.00 -0.35 -1.45 16 17 C -0.15 -2.54 5.95 -24.90 -0.15 -2.68 16 18 C 0.18 4.08 5.36 -3.07 -0.02 4.07 16 19 N -0.60 -15.24 3.40 -169.76 -0.58 -15.81 16 20 C -0.22 -6.25 10.28 -15.06 -0.15 -6.41 16 21 H 0.08 2.10 7.83 -52.49 -0.41 1.68 16 22 C -0.01 -0.25 5.49 -17.43 -0.10 -0.34 16 23 N -0.92 -26.64 10.31 55.49 0.57 -26.07 16 24 Si 0.91 22.28 29.55 -169.99 -5.02 17.25 16 25 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 26 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 27 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 28 C 0.13 2.89 6.19 -2.26 -0.01 2.88 16 29 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 30 H 0.08 1.31 5.91 -51.93 -0.31 1.00 16 31 H 0.06 0.91 8.09 -51.93 -0.42 0.49 16 32 H 0.40 5.61 6.54 -40.82 -0.27 5.34 16 33 H 0.13 1.32 6.40 -52.49 -0.34 0.99 16 34 H 0.14 0.91 8.06 -52.49 -0.42 0.49 16 35 H 0.13 0.97 6.69 -52.48 -0.35 0.62 16 36 H 0.17 1.68 7.01 -52.49 -0.37 1.31 16 37 H 0.14 1.20 8.06 -52.49 -0.42 0.77 16 38 H 0.14 1.08 8.06 -52.49 -0.42 0.65 16 39 H 0.16 1.18 7.00 -52.49 -0.37 0.81 16 40 H 0.14 1.93 6.29 -52.49 -0.33 1.60 16 41 H 0.07 1.20 8.04 -51.93 -0.42 0.78 16 42 H 0.06 0.94 8.09 -51.93 -0.42 0.52 16 43 H 0.05 1.13 7.38 -51.93 -0.38 0.75 16 44 H 0.04 1.15 7.51 -51.93 -0.39 0.76 16 45 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 46 H 0.05 1.15 6.90 -51.93 -0.36 0.80 16 47 H 0.03 0.58 8.00 -51.93 -0.42 0.17 16 LS Contribution 377.72 15.07 5.69 5.69 Total: -1.00 -33.05 377.72 -10.24 -43.29 By element: Atomic # 1 Polarization: 13.13 SS G_CDS: -6.37 Total: 6.76 kcal Atomic # 6 Polarization: -0.74 SS G_CDS: -4.19 Total: -4.93 kcal Atomic # 7 Polarization: -57.54 SS G_CDS: -0.42 Total: -57.97 kcal Atomic # 8 Polarization: -10.17 SS G_CDS: 0.07 Total: -10.10 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.02 Total: 17.25 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -33.05 -10.24 -43.29 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046463219.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.387 kcal (2) G-P(sol) polarization free energy of solvation -33.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.286 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds