Wall clock time and date at job start Tue Mar 31 2020 22:43:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46494 * 110.91809 * 2 1 4 4 C 1.34774 * 120.00081 * 303.90144 * 3 2 1 5 5 O 1.21550 * 120.00078 * 0.02562 * 4 3 2 6 6 C 1.47862 * 120.00195 * 179.97438 * 4 3 2 7 7 C 1.39621 * 120.10886 * 359.72685 * 6 4 3 8 8 C 1.37979 * 119.98376 * 179.74232 * 7 6 4 9 9 C 1.38270 * 120.21297 * 0.55624 * 8 7 6 10 10 C 1.38903 * 120.23211 * 359.69621 * 9 8 7 11 11 N 1.40219 * 119.99672 * 180.02562 * 10 9 8 12 12 C 1.36570 * 125.66706 * 179.66705 * 11 10 9 13 13 C 1.34861 * 108.19705 * 179.88982 * 12 11 10 14 14 C 1.40942 * 107.46900 * 0.37160 * 13 12 11 15 15 C 1.34858 * 107.46473 * 359.76931 * 14 13 12 16 16 C 1.38589 * 120.00841 * 0.02562 * 10 9 8 17 17 C 1.55157 * 111.00230 * 123.90532 * 2 1 3 18 18 C 1.54321 * 103.10033 * 153.66249 * 17 2 1 19 19 N 1.47019 * 107.27531 * 337.71659 * 18 17 2 20 20 C 1.36934 * 125.65046 * 178.97751 * 19 18 17 21 21 H 1.08001 * 119.99839 * 179.97438 * 20 19 18 22 22 C 1.38816 * 120.00199 * 359.97423 * 20 19 18 23 23 N 1.31622 * 119.99707 * 359.97438 * 22 20 19 24 24 Si 1.86796 * 120.00112 * 180.02562 * 22 20 19 25 25 H 1.48496 * 109.47000 * 60.00290 * 24 22 20 26 26 H 1.48504 * 109.47170 * 179.97438 * 24 22 20 27 27 H 1.48502 * 109.47305 * 299.99926 * 24 22 20 28 28 C 1.47431 * 108.70142 * 358.94050 * 19 18 17 29 29 H 1.08998 * 109.47366 * 296.10172 * 1 2 3 30 30 H 1.09006 * 109.46883 * 56.09371 * 1 2 3 31 31 H 1.08999 * 109.47315 * 176.09315 * 1 2 3 32 32 H 0.97003 * 120.00141 * 123.90560 * 3 2 1 33 33 H 1.07992 * 120.00901 * 0.02562 * 7 6 4 34 34 H 1.07995 * 119.89603 * 180.27530 * 8 7 6 35 35 H 1.08003 * 119.88146 * 179.71954 * 9 8 7 36 36 H 1.08000 * 125.90197 * 0.02562 * 12 11 10 37 37 H 1.08001 * 126.26052 * 180.13946 * 13 12 11 38 38 H 1.08000 * 126.26434 * 179.76374 * 14 13 12 39 39 H 1.07998 * 125.89390 * 179.97438 * 15 14 13 40 40 H 1.08002 * 120.10877 * 179.97438 * 16 10 9 41 41 H 1.09002 * 110.72219 * 35.20946 * 17 2 1 42 42 H 1.09003 * 110.71618 * 272.11558 * 17 2 1 43 43 H 1.09001 * 109.88480 * 97.13771 * 18 17 2 44 44 H 1.09004 * 109.87910 * 218.29695 * 18 17 2 45 45 H 0.96993 * 119.99930 * 179.97438 * 23 22 20 46 46 H 1.08999 * 110.36190 * 142.96411 * 28 19 18 47 47 H 1.08998 * 110.36491 * 265.18090 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0530 1.3684 0.0000 4 6 1.6855 2.2303 -0.9687 5 8 0.9197 1.8724 -1.8422 6 6 2.2130 3.6116 -0.9685 7 6 3.0874 4.0272 0.0375 8 6 3.5823 5.3152 0.0323 9 6 3.2060 6.2011 -0.9604 10 6 2.3325 5.7987 -1.9626 11 7 1.9547 6.7010 -2.9672 12 6 1.1120 6.4283 -4.0067 13 6 0.9927 7.5433 -4.7559 14 6 1.7961 8.5386 -4.1640 15 6 2.3729 7.9968 -3.0720 16 6 1.8343 4.5055 -1.9697 17 6 2.0861 -0.8080 1.2022 18 6 3.4690 -1.2743 0.7005 19 7 3.4326 -1.2462 -0.7689 20 6 4.4719 -1.5708 -1.5994 21 1 4.3440 -1.5181 -2.6705 22 6 5.6899 -1.9675 -1.0645 23 7 5.8460 -2.0312 0.2409 24 14 7.1079 -2.4096 -2.1973 25 1 7.4515 -1.2369 -3.0410 26 1 8.2887 -2.7969 -1.3844 27 1 6.7108 -3.5459 -3.0671 28 6 2.0916 -0.8114 -1.2004 29 1 -0.3634 0.4521 0.9228 30 1 -0.3633 0.5733 -0.8530 31 1 -0.3634 -1.0252 -0.0700 32 1 2.6639 1.6541 0.6972 33 1 3.3801 3.3394 0.8169 34 1 4.2621 5.6338 0.8086 35 1 3.5931 7.2094 -0.9567 36 1 0.6237 5.4835 -4.1950 37 1 0.3942 7.6523 -5.6483 38 1 1.9260 9.5500 -4.5200 39 1 3.0491 8.5006 -2.3973 40 1 1.1546 4.1910 -2.7479 41 1 1.4467 -1.6632 1.4209 42 1 2.1892 -0.1707 2.0805 43 1 4.2428 -0.5987 1.0652 44 1 3.6663 -2.2888 1.0472 45 1 6.6969 -2.3087 0.6146 46 1 2.1643 -0.1785 -2.0847 47 1 1.4599 -1.6760 -1.4043 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001046463219.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:43:33 Heat of formation + Delta-G solvation = 62.631354 kcal Electronic energy + Delta-G solvation = -29060.529106 eV Core-core repulsion = 25209.477234 eV Total energy + Delta-G solvation = -3851.051872 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.61874 -41.47128 -39.78392 -38.60237 -35.74234 -34.51045 -33.54330 -32.54880 -31.57806 -30.37858 -29.80549 -29.69153 -27.53381 -25.74163 -25.04809 -24.11574 -22.60265 -22.02634 -21.19030 -20.79365 -20.39964 -19.84294 -18.88368 -17.75993 -17.27831 -17.05777 -16.70619 -16.23824 -16.07569 -15.86939 -15.66050 -15.56793 -15.18299 -14.89782 -14.58324 -14.42774 -14.25034 -13.89097 -13.66325 -13.54602 -13.36311 -13.26861 -13.17731 -13.07490 -12.83120 -12.76895 -12.75033 -12.45398 -12.14277 -12.06603 -11.99342 -11.71968 -11.59886 -10.93314 -10.76793 -10.71021 -10.24105 -10.00640 -9.24122 -9.07012 -8.87712 -7.87177 -5.20776 -0.37318 -0.05136 1.33483 1.42800 1.44884 1.51446 1.75626 1.88807 2.03414 2.16223 2.46895 2.77298 3.30660 3.43943 3.61150 3.64701 3.70917 3.82655 4.00984 4.02292 4.05339 4.10824 4.17272 4.25774 4.44092 4.56897 4.62761 4.66799 4.69826 4.75183 4.78324 4.84380 4.90735 4.96106 5.00518 5.06571 5.13777 5.21720 5.29110 5.33467 5.36547 5.40954 5.56976 5.62453 5.68043 5.76342 5.94760 6.18792 6.19138 6.42168 6.55442 7.10669 7.18991 7.75723 8.40025 9.22299 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.012214 B = 0.002964 C = 0.002709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2291.918346 B = 9445.404951 C =10334.663916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.167 3.833 3 N -0.689 5.689 4 C 0.555 3.445 5 O -0.569 6.569 6 C -0.118 4.118 7 C -0.097 4.097 8 C -0.086 4.086 9 C -0.111 4.111 10 C 0.119 3.881 11 N -0.405 5.405 12 C -0.041 4.041 13 C -0.199 4.199 14 C -0.202 4.202 15 C -0.021 4.021 16 C -0.100 4.100 17 C -0.129 4.129 18 C 0.184 3.816 19 N -0.620 5.620 20 C -0.244 4.244 21 H 0.066 0.934 22 C -0.056 4.056 23 N -0.943 5.943 24 Si 0.972 3.028 25 H -0.282 1.282 26 H -0.287 1.287 27 H -0.281 1.281 28 C 0.130 3.870 29 H 0.077 0.923 30 H 0.061 0.939 31 H 0.074 0.926 32 H 0.408 0.592 33 H 0.148 0.852 34 H 0.177 0.823 35 H 0.165 0.835 36 H 0.164 0.836 37 H 0.154 0.846 38 H 0.162 0.838 39 H 0.195 0.805 40 H 0.126 0.874 41 H 0.092 0.908 42 H 0.100 0.900 43 H 0.021 0.979 44 H 0.010 0.990 45 H 0.249 0.751 46 H 0.022 0.978 47 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.089 20.596 2.918 22.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.080 3.920 3 N -0.340 5.340 4 C 0.343 3.657 5 O -0.450 6.450 6 C -0.121 4.121 7 C -0.117 4.117 8 C -0.104 4.104 9 C -0.131 4.131 10 C 0.026 3.974 11 N -0.077 5.077 12 C -0.167 4.167 13 C -0.223 4.223 14 C -0.226 4.226 15 C -0.147 4.147 16 C -0.120 4.120 17 C -0.167 4.167 18 C 0.060 3.940 19 N -0.346 5.346 20 C -0.374 4.374 21 H 0.084 0.916 22 C -0.249 4.249 23 N -0.592 5.592 24 Si 0.800 3.200 25 H -0.209 1.209 26 H -0.213 1.213 27 H -0.207 1.207 28 C 0.003 3.997 29 H 0.096 0.904 30 H 0.080 0.920 31 H 0.093 0.907 32 H 0.246 0.754 33 H 0.166 0.834 34 H 0.194 0.806 35 H 0.183 0.817 36 H 0.181 0.819 37 H 0.172 0.828 38 H 0.180 0.820 39 H 0.212 0.788 40 H 0.144 0.856 41 H 0.111 0.889 42 H 0.118 0.882 43 H 0.039 0.961 44 H 0.028 0.972 45 H 0.058 0.942 46 H 0.041 0.959 47 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -8.344 20.053 2.542 21.868 hybrid contribution 1.113 -0.771 -0.759 1.552 sum -7.231 19.282 1.783 20.671 Atomic orbital electron populations 1.21961 0.91831 1.03241 1.03199 1.21467 0.94189 0.80522 0.95821 1.45672 1.48281 1.11201 1.28806 1.18470 0.80518 0.85495 0.81168 1.90686 1.37413 1.79086 1.37822 1.19755 1.01340 0.93007 0.98040 1.21679 0.94880 0.97827 0.97263 1.21391 0.98787 0.91669 0.98566 1.21398 0.96370 1.02367 0.92928 1.17910 0.99155 0.89187 0.91115 1.41786 1.36052 1.10140 1.19729 1.22223 1.00862 1.01867 0.91789 1.21330 1.05125 0.93217 1.02582 1.21358 1.02452 1.01045 0.97755 1.22478 1.05780 0.83487 1.02963 1.20795 1.00548 0.91561 0.99116 1.23117 0.96892 1.00072 0.96603 1.20969 0.92892 0.97608 0.82550 1.44657 1.08364 1.78889 1.02710 1.19257 0.90705 1.38128 0.89264 0.91602 1.25483 0.99813 1.02159 0.97482 1.70120 1.24479 1.54371 1.10208 0.85259 0.78884 0.78023 0.77792 1.20860 1.21300 1.20737 1.22062 0.86511 0.95031 0.96066 0.90439 0.92014 0.90702 0.75448 0.83404 0.80583 0.81722 0.81902 0.82805 0.82016 0.78803 0.85606 0.88930 0.88184 0.96069 0.97210 0.94206 0.95912 0.95601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.15 8.60 71.98 0.62 -3.53 16 2 C 0.17 5.68 0.83 5.17 0.00 5.68 16 3 N -0.69 -21.76 5.13 -418.71 -2.15 -23.91 16 4 C 0.56 18.79 7.15 86.79 0.62 19.41 16 5 O -0.57 -22.78 13.19 -3.87 -0.05 -22.83 16 6 C -0.12 -3.28 5.87 -20.10 -0.12 -3.40 16 7 C -0.10 -2.03 9.54 22.54 0.22 -1.82 16 8 C -0.09 -1.33 10.03 22.22 0.22 -1.10 16 9 C -0.11 -1.84 9.45 22.44 0.21 -1.63 16 10 C 0.12 2.72 6.61 38.04 0.25 2.97 16 11 N -0.40 -9.15 2.97 -346.78 -1.03 -10.19 16 12 C -0.04 -0.96 10.73 83.18 0.89 -0.07 16 13 C -0.20 -4.10 10.86 22.16 0.24 -3.86 16 14 C -0.20 -3.67 10.86 22.16 0.24 -3.43 16 15 C -0.02 -0.38 10.73 83.18 0.89 0.51 16 16 C -0.10 -2.74 9.00 22.65 0.20 -2.54 16 17 C -0.13 -4.20 5.95 31.78 0.19 -4.02 16 18 C 0.18 8.61 5.36 86.73 0.47 9.08 16 19 N -0.62 -32.22 3.40 -691.01 -2.35 -34.56 16 20 C -0.24 -14.15 10.28 84.03 0.86 -13.29 16 21 H 0.07 3.81 7.83 -2.91 -0.02 3.79 16 22 C -0.06 -3.18 5.49 84.86 0.47 -2.72 16 23 N -0.94 -55.28 10.31 21.65 0.22 -55.06 16 24 Si 0.97 46.38 29.55 68.60 2.03 48.41 16 25 H -0.28 -13.21 7.11 99.48 0.71 -12.50 16 26 H -0.29 -13.48 7.11 99.48 0.71 -12.78 16 27 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 28 C 0.13 5.78 6.19 87.02 0.54 6.32 16 29 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 30 H 0.06 2.04 5.91 -2.38 -0.01 2.02 16 31 H 0.07 1.98 8.09 -2.39 -0.02 1.96 16 32 H 0.41 11.01 6.54 -92.71 -0.61 10.40 16 33 H 0.15 2.58 6.40 -2.91 -0.02 2.56 16 34 H 0.18 1.40 8.06 -2.91 -0.02 1.38 16 35 H 0.17 1.62 6.69 -2.91 -0.02 1.60 16 36 H 0.16 3.68 7.01 -2.91 -0.02 3.66 16 37 H 0.15 2.56 8.06 -2.91 -0.02 2.54 16 38 H 0.16 2.09 8.06 -2.91 -0.02 2.06 16 39 H 0.20 2.04 7.00 -2.91 -0.02 2.02 16 40 H 0.13 3.76 6.29 -2.91 -0.02 3.75 16 41 H 0.09 2.75 8.04 -2.39 -0.02 2.73 16 42 H 0.10 2.60 8.09 -2.39 -0.02 2.58 16 43 H 0.02 1.07 7.38 -2.39 -0.02 1.06 16 44 H 0.01 0.51 7.51 -2.38 -0.02 0.50 16 45 H 0.25 14.17 8.31 -92.71 -0.77 13.40 16 46 H 0.02 1.12 6.90 -2.39 -0.02 1.10 16 47 H 0.03 1.16 8.00 -2.39 -0.02 1.14 16 Total: -1.00 -75.29 377.72 4.08 -71.20 By element: Atomic # 1 Polarization: 23.97 SS G_CDS: 0.39 Total: 24.36 kcal Atomic # 6 Polarization: -4.45 SS G_CDS: 7.02 Total: 2.57 kcal Atomic # 7 Polarization: -118.41 SS G_CDS: -5.30 Total: -123.71 kcal Atomic # 8 Polarization: -22.78 SS G_CDS: -0.05 Total: -22.83 kcal Atomic # 14 Polarization: 46.38 SS G_CDS: 2.03 Total: 48.41 kcal Total: -75.29 4.08 -71.20 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046463219.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.834 kcal (2) G-P(sol) polarization free energy of solvation -75.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.203 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds