Wall clock time and date at job start Tue Mar 31 2020 22:43:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46500 * 110.88921 * 2 1 4 4 C 1.34777 * 119.99929 * 59.29510 * 3 2 1 5 5 O 1.21559 * 120.00063 * 0.02562 * 4 3 2 6 6 C 1.47857 * 120.00201 * 179.72432 * 4 3 2 7 7 C 1.39621 * 120.11027 * 0.27757 * 6 4 3 8 8 C 1.37969 * 119.98365 * 179.97438 * 7 6 4 9 9 C 1.38266 * 120.22047 * 0.02562 * 8 7 6 10 10 C 1.38906 * 120.22450 * 359.97438 * 9 8 7 11 11 N 1.40229 * 119.99216 * 180.02562 * 10 9 8 12 12 C 1.36567 * 125.66480 * 179.69290 * 11 10 9 13 13 C 1.34850 * 108.19655 * 179.88749 * 12 11 10 14 14 C 1.40935 * 107.47005 * 0.36774 * 13 12 11 15 15 C 1.34857 * 107.46741 * 359.76803 * 14 13 12 16 16 C 1.38590 * 120.01420 * 359.78612 * 10 9 8 17 17 C 1.55160 * 111.00283 * 236.12054 * 2 1 3 18 18 C 1.54425 * 102.89155 * 206.41230 * 17 2 1 19 19 N 1.47025 * 107.28463 * 22.18179 * 18 17 2 20 20 C 1.36937 * 125.65100 * 181.02706 * 19 18 17 21 21 H 1.08001 * 119.99828 * 173.94357 * 20 19 18 22 22 C 1.38812 * 120.00075 * 353.94514 * 20 19 18 23 23 N 1.31627 * 119.99790 * 6.82725 * 22 20 19 24 24 Si 1.86798 * 120.00334 * 186.83066 * 22 20 19 25 25 H 1.48501 * 109.47195 * 94.98121 * 24 22 20 26 26 H 1.48494 * 109.47089 * 214.98475 * 24 22 20 27 27 H 1.48501 * 109.46648 * 334.98544 * 24 22 20 28 28 C 1.47423 * 108.70117 * 1.06427 * 19 18 17 29 29 H 1.09006 * 109.46921 * 60.69849 * 1 2 3 30 30 H 1.08995 * 109.47431 * 180.69517 * 1 2 3 31 31 H 1.08999 * 109.47498 * 300.70481 * 1 2 3 32 32 H 0.97001 * 120.00286 * 239.30322 * 3 2 1 33 33 H 1.08000 * 120.00689 * 0.02562 * 7 6 4 34 34 H 1.08003 * 119.88835 * 179.97438 * 8 7 6 35 35 H 1.08000 * 119.88813 * 179.97438 * 9 8 7 36 36 H 1.07994 * 125.90297 * 0.02601 * 12 11 10 37 37 H 1.08011 * 126.26794 * 180.13371 * 13 12 11 38 38 H 1.08003 * 126.26804 * 179.75493 * 14 13 12 39 39 H 1.07996 * 125.89699 * 180.02562 * 15 14 13 40 40 H 1.07993 * 120.11177 * 180.23709 * 16 10 9 41 41 H 1.09005 * 110.72083 * 324.74957 * 17 2 1 42 42 H 1.08992 * 110.72393 * 88.02446 * 17 2 1 43 43 H 1.09003 * 109.87319 * 262.76734 * 18 17 2 44 44 H 1.09002 * 109.88480 * 141.60616 * 18 17 2 45 45 H 0.97002 * 120.00078 * 180.02562 * 23 22 20 46 46 H 1.09001 * 110.36597 * 217.03082 * 28 19 18 47 47 H 1.08999 * 110.45782 * 94.75483 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0524 1.3687 0.0000 4 6 1.7358 2.2108 1.0036 5 8 1.0173 1.8345 1.9090 6 6 2.2679 3.5903 1.0068 7 6 3.0939 4.0249 -0.0317 8 6 3.5885 5.3128 -0.0263 9 6 3.2696 6.1765 1.0052 10 6 2.4487 5.7535 2.0429 11 7 2.1280 6.6337 3.0864 12 6 1.3305 6.3432 4.1563 13 6 1.2629 7.4381 4.9406 14 6 2.0389 8.4441 4.3306 15 6 2.5566 7.9254 3.1985 16 6 1.9426 4.4633 2.0445 17 6 2.0861 -0.8075 -1.2026 18 6 3.4682 -1.2733 -0.6952 19 7 3.4274 -1.2421 0.7742 20 6 4.4641 -1.5651 1.6085 21 1 4.3663 -1.4168 2.6738 22 6 5.6408 -2.0830 1.0850 23 7 5.8126 -2.1387 -0.2188 24 14 6.9804 -2.7012 2.2308 25 1 6.8344 -4.1672 2.4176 26 1 8.3110 -2.4074 1.6406 27 1 6.8605 -2.0204 3.5450 28 6 2.0852 -0.8062 1.2006 29 1 -0.3633 0.5030 -0.8962 30 1 -0.3634 -1.0275 0.0125 31 1 -0.3634 0.5247 0.8836 32 1 2.6260 1.6690 -0.7223 33 1 3.3448 3.3532 -0.8393 34 1 4.2276 5.6473 -0.8302 35 1 3.6601 7.1834 1.0043 36 1 0.8407 5.3991 4.3432 37 1 0.7115 7.5289 5.8649 38 1 2.1910 9.4469 4.7018 39 1 3.1993 8.4423 2.5013 40 1 1.3011 4.1340 2.8485 41 1 1.4471 -1.6631 -1.4212 42 1 2.1916 -0.1694 -2.0799 43 1 4.2432 -0.5986 -1.0588 44 1 3.6665 -2.2885 -1.0390 45 1 6.6347 -2.5010 -0.5847 46 1 2.1553 -0.1714 2.0839 47 1 1.4511 -1.6692 1.4038 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001046463222.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:43:38 Heat of formation + Delta-G solvation = 80.675131 kcal Electronic energy + Delta-G solvation = -29065.597544 eV Core-core repulsion = 25215.328109 eV Total energy + Delta-G solvation = -3850.269435 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.80909 -40.22960 -38.69355 -37.14449 -34.10512 -33.46395 -32.07843 -31.39491 -30.05113 -29.03299 -28.89839 -28.62937 -25.70240 -24.47772 -23.56743 -23.22487 -21.47485 -20.36309 -20.24178 -19.85595 -19.10519 -18.80263 -17.09887 -16.55720 -16.27605 -15.75202 -15.23337 -15.06695 -14.68623 -14.63621 -14.58963 -14.17803 -13.75811 -13.70980 -13.66331 -13.26841 -12.87259 -12.66984 -12.52014 -12.38158 -12.10124 -12.03610 -11.89353 -11.81515 -11.68440 -11.55377 -10.94204 -10.88353 -10.45027 -10.40584 -10.10308 -10.08510 -10.04292 -9.67573 -9.42750 -9.28975 -8.69333 -8.55663 -8.44644 -8.23179 -6.80907 -5.73529 -3.04266 0.53192 0.84095 2.17350 2.58634 2.81144 2.98037 3.34472 3.40179 3.46023 3.47478 3.77075 4.41488 4.46755 4.50400 4.67802 4.82883 4.89035 4.90365 5.00788 5.08447 5.26065 5.32504 5.36203 5.43883 5.47739 5.58003 5.59458 5.69977 5.75872 5.95034 6.00432 6.05164 6.05319 6.10109 6.12369 6.13448 6.32226 6.36206 6.39239 6.50950 6.64147 6.71258 6.79213 6.98790 7.07005 7.21965 7.49140 7.56767 7.77522 7.81348 8.24596 8.44828 9.22083 9.82229 10.48468 11.38980 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.012165 B = 0.002959 C = 0.002710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2301.117348 B = 9461.897622 C =10329.344687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.156 3.844 3 N -0.692 5.692 4 C 0.560 3.440 5 O -0.534 6.534 6 C -0.094 4.094 7 C -0.096 4.096 8 C -0.096 4.096 9 C -0.121 4.121 10 C 0.129 3.871 11 N -0.395 5.395 12 C -0.011 4.011 13 C -0.193 4.193 14 C -0.192 4.192 15 C -0.018 4.018 16 C -0.082 4.082 17 C -0.147 4.147 18 C 0.177 3.823 19 N -0.603 5.603 20 C -0.222 4.222 21 H 0.076 0.924 22 C -0.008 4.008 23 N -0.923 5.923 24 Si 0.909 3.091 25 H -0.289 1.289 26 H -0.292 1.292 27 H -0.281 1.281 28 C 0.132 3.868 29 H 0.050 0.950 30 H 0.064 0.936 31 H 0.074 0.926 32 H 0.398 0.602 33 H 0.134 0.866 34 H 0.138 0.862 35 H 0.133 0.867 36 H 0.167 0.833 37 H 0.141 0.859 38 H 0.140 0.860 39 H 0.164 0.836 40 H 0.144 0.856 41 H 0.074 0.926 42 H 0.064 0.936 43 H 0.041 0.959 44 H 0.047 0.953 45 H 0.251 0.749 46 H 0.052 0.948 47 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.594 18.528 -1.435 20.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.070 3.930 3 N -0.342 5.342 4 C 0.346 3.654 5 O -0.412 6.412 6 C -0.098 4.098 7 C -0.115 4.115 8 C -0.115 4.115 9 C -0.141 4.141 10 C 0.037 3.963 11 N -0.067 5.067 12 C -0.138 4.138 13 C -0.217 4.217 14 C -0.216 4.216 15 C -0.144 4.144 16 C -0.103 4.103 17 C -0.185 4.185 18 C 0.052 3.948 19 N -0.329 5.329 20 C -0.351 4.351 21 H 0.094 0.906 22 C -0.204 4.204 23 N -0.571 5.571 24 Si 0.739 3.261 25 H -0.216 1.216 26 H -0.218 1.218 27 H -0.207 1.207 28 C 0.005 3.995 29 H 0.069 0.931 30 H 0.083 0.917 31 H 0.093 0.907 32 H 0.233 0.767 33 H 0.152 0.848 34 H 0.156 0.844 35 H 0.150 0.850 36 H 0.184 0.816 37 H 0.158 0.842 38 H 0.158 0.842 39 H 0.181 0.819 40 H 0.161 0.839 41 H 0.093 0.907 42 H 0.083 0.917 43 H 0.060 0.940 44 H 0.065 0.935 45 H 0.061 0.939 46 H 0.070 0.930 47 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -8.815 17.958 -1.022 20.031 hybrid contribution 1.229 -0.203 0.201 1.262 sum -7.586 17.755 -0.822 19.325 Atomic orbital electron populations 1.22012 0.94156 1.02306 1.02471 1.21539 0.92713 0.80387 0.98398 1.45724 1.50995 1.12311 1.25196 1.17993 0.80747 0.84419 0.82244 1.90725 1.37680 1.77189 1.35613 1.19909 0.99638 0.94466 0.95811 1.21438 0.95908 0.96330 0.97860 1.20952 0.99332 0.93057 0.98119 1.20960 0.98644 1.00893 0.93618 1.17747 0.99218 0.90050 0.89300 1.41643 1.37554 1.10118 1.17392 1.22025 1.00742 1.01452 0.89538 1.20997 1.05534 0.93527 1.01672 1.20986 1.03580 1.00196 0.96815 1.21874 1.06225 0.84442 1.01900 1.20860 0.99696 0.90597 0.99128 1.23256 1.00565 0.98941 0.95786 1.21189 0.89844 1.00024 0.83765 1.44434 1.07535 1.79173 1.01740 1.19063 0.91923 1.34622 0.89473 0.90602 1.24777 0.98144 1.01469 0.96010 1.69959 1.26393 1.51271 1.09435 0.86138 0.81251 0.78914 0.79771 1.21626 1.21823 1.20680 1.21876 0.87632 0.94946 0.95015 0.93123 0.91732 0.90709 0.76690 0.84777 0.84381 0.84955 0.81572 0.84156 0.84239 0.81861 0.83878 0.90692 0.91742 0.94049 0.93453 0.93865 0.92976 0.95524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.26 8.57 37.16 0.32 -1.94 16 2 C 0.16 2.70 0.82 -129.67 -0.11 2.59 16 3 N -0.69 -11.01 5.13 -46.55 -0.24 -11.25 16 4 C 0.56 9.26 7.15 -12.32 -0.09 9.17 16 5 O -0.53 -10.23 13.15 5.31 0.07 -10.16 16 6 C -0.09 -1.31 5.87 -104.99 -0.62 -1.93 16 7 C -0.10 -1.08 9.54 -39.16 -0.37 -1.45 16 8 C -0.10 -0.90 10.02 -39.67 -0.40 -1.30 16 9 C -0.12 -1.19 9.45 -39.32 -0.37 -1.56 16 10 C 0.13 1.54 6.61 -83.64 -0.55 0.98 16 11 N -0.40 -4.63 2.97 -60.96 -0.18 -4.81 16 12 C -0.01 -0.12 10.73 -16.64 -0.18 -0.30 16 13 C -0.19 -2.04 10.86 -39.76 -0.43 -2.48 16 14 C -0.19 -1.92 10.86 -39.76 -0.43 -2.35 16 15 C -0.02 -0.18 10.73 -16.64 -0.18 -0.36 16 16 C -0.08 -1.10 9.00 -39.00 -0.35 -1.45 16 17 C -0.15 -2.52 5.99 -24.84 -0.15 -2.67 16 18 C 0.18 4.08 5.37 -3.01 -0.02 4.06 16 19 N -0.60 -15.27 3.39 -170.01 -0.58 -15.85 16 20 C -0.22 -6.27 10.26 -15.06 -0.15 -6.43 16 21 H 0.08 2.13 7.84 -52.49 -0.41 1.72 16 22 C -0.01 -0.23 5.48 -17.43 -0.10 -0.32 16 23 N -0.92 -26.66 10.36 55.49 0.58 -26.08 16 24 Si 0.91 22.33 29.56 -169.99 -5.02 17.31 16 25 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 26 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 27 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 28 C 0.13 2.87 6.13 -2.53 -0.02 2.86 16 29 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.06 0.90 8.13 -51.93 -0.42 0.48 16 31 H 0.07 1.23 6.22 -51.93 -0.32 0.90 16 32 H 0.40 5.51 6.53 -40.82 -0.27 5.24 16 33 H 0.13 1.30 6.40 -52.49 -0.34 0.96 16 34 H 0.14 0.90 8.06 -52.48 -0.42 0.48 16 35 H 0.13 0.97 6.69 -52.49 -0.35 0.62 16 36 H 0.17 1.69 7.00 -52.49 -0.37 1.32 16 37 H 0.14 1.20 8.06 -52.48 -0.42 0.78 16 38 H 0.14 1.08 8.06 -52.48 -0.42 0.66 16 39 H 0.16 1.18 7.00 -52.49 -0.37 0.81 16 40 H 0.14 1.94 6.29 -52.49 -0.33 1.61 16 41 H 0.07 1.21 8.04 -51.93 -0.42 0.79 16 42 H 0.06 0.94 8.06 -51.93 -0.42 0.52 16 43 H 0.04 1.04 7.55 -51.93 -0.39 0.64 16 44 H 0.05 1.23 7.37 -51.93 -0.38 0.84 16 45 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 46 H 0.05 1.23 6.58 -51.93 -0.34 0.89 16 47 H 0.03 0.58 8.03 -51.93 -0.42 0.17 16 LS Contribution 377.70 15.07 5.69 5.69 Total: -1.00 -33.26 377.70 -10.25 -43.51 By element: Atomic # 1 Polarization: 12.88 SS G_CDS: -6.37 Total: 6.51 kcal Atomic # 6 Polarization: -0.68 SS G_CDS: -4.19 Total: -4.87 kcal Atomic # 7 Polarization: -57.56 SS G_CDS: -0.42 Total: -57.99 kcal Atomic # 8 Polarization: -10.23 SS G_CDS: 0.07 Total: -10.16 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.02 Total: 17.31 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -33.26 -10.25 -43.51 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046463222.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.183 kcal (2) G-P(sol) polarization free energy of solvation -33.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.508 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds