Wall clock time and date at job start Tue Mar 31 2020 22:17:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.39436 * 119.54083 * 2 1 4 4 C 1.35998 * 121.08440 * 180.02562 * 3 2 1 5 5 C 1.40824 * 119.73629 * 359.97438 * 4 3 2 6 6 N 1.33265 * 120.98872 * 180.02562 * 5 4 3 7 7 C 1.31875 * 121.30286 * 179.97438 * 6 5 4 8 8 C 1.48280 * 119.24247 * 179.97438 * 7 6 5 9 9 O 1.21497 * 120.00047 * 180.02562 * 8 7 6 10 10 N 1.34776 * 119.99884 * 0.02562 * 8 7 6 11 11 C 1.46495 * 119.99960 * 180.02562 * 10 8 7 12 12 C 1.52999 * 110.89049 * 62.42375 * 11 10 8 13 13 C 1.55157 * 111.00649 * 186.35318 * 11 10 8 14 14 C 1.54314 * 102.94549 * 82.56853 * 13 11 10 15 15 N 1.47022 * 107.27510 * 22.19325 * 14 13 11 16 16 C 1.36933 * 125.65396 * 181.02322 * 15 14 13 17 17 H 1.08001 * 120.00381 * 180.02562 * 16 15 14 18 18 C 1.38814 * 120.00051 * 0.04273 * 16 15 14 19 19 N 1.31623 * 119.99477 * 0.02562 * 18 16 15 20 20 Si 1.86791 * 120.00327 * 180.02562 * 18 16 15 21 21 H 1.48510 * 109.47022 * 0.02562 * 20 18 16 22 22 H 1.48497 * 109.47397 * 119.99893 * 20 18 16 23 23 H 1.48498 * 109.47429 * 240.00409 * 20 18 16 24 24 C 1.47430 * 108.70087 * 1.06129 * 15 14 13 25 25 C 1.40284 * 121.51711 * 0.02562 * 7 6 5 26 26 C 1.36502 * 119.81591 * 359.97438 * 25 7 6 27 27 C 1.40754 * 118.24335 * 0.25891 * 26 25 7 28 28 C 1.36128 * 119.54555 * 180.02562 * 2 1 3 29 29 H 1.09005 * 109.46728 * 90.00491 * 1 2 3 30 30 H 1.08997 * 109.46848 * 209.99627 * 1 2 3 31 31 H 1.08992 * 109.47095 * 330.00321 * 1 2 3 32 32 H 1.08002 * 119.45895 * 0.04204 * 3 2 1 33 33 H 1.08002 * 120.12732 * 180.02562 * 4 3 2 34 34 H 0.96999 * 119.99812 * 359.97438 * 10 8 7 35 35 H 1.09006 * 109.46592 * 60.70068 * 12 11 10 36 36 H 1.08996 * 109.47175 * 180.70033 * 12 11 10 37 37 H 1.09005 * 109.46883 * 300.70830 * 12 11 10 38 38 H 1.08997 * 110.72065 * 200.93830 * 13 11 10 39 39 H 1.09002 * 110.71516 * 324.20526 * 13 11 10 40 40 H 1.09000 * 109.88341 * 262.77784 * 14 13 11 41 41 H 1.09007 * 109.88449 * 141.61309 * 14 13 11 42 42 H 0.97003 * 119.99238 * 179.97438 * 19 18 16 43 43 H 1.08996 * 110.37044 * 217.03131 * 24 15 14 44 44 H 1.09001 * 110.45900 * 94.75273 * 24 15 14 45 45 H 1.07997 * 120.08725 * 179.97438 * 25 7 6 46 46 H 1.08002 * 120.87411 * 179.97438 * 26 25 7 47 47 H 1.08001 * 120.17284 * 0.02562 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1945 1.2131 0.0000 4 6 3.5540 1.2497 -0.0005 5 6 4.2852 0.0462 -0.0005 6 7 5.6178 0.0530 -0.0005 7 6 6.3087 -1.0703 0.0000 8 6 7.7903 -1.0095 -0.0006 9 8 8.4404 -2.0359 -0.0006 10 7 8.4157 0.1844 -0.0011 11 6 9.8794 0.2445 -0.0023 12 6 10.4507 -0.3943 -1.2697 13 6 10.3762 1.7057 0.1576 14 6 10.3105 1.9282 1.6832 15 7 10.3507 0.6035 2.3197 16 6 10.2937 0.3631 3.6666 17 1 10.3310 -0.6510 4.0362 18 6 10.1875 1.4228 4.5569 19 7 10.1412 2.6587 4.1063 20 14 10.1104 1.0950 6.3942 21 1 10.1809 -0.3680 6.6394 22 1 11.2537 1.7644 7.0649 23 1 8.8359 1.6278 6.9391 24 6 10.4635 -0.4232 1.2677 25 6 5.6743 -2.3215 0.0000 26 6 4.3110 -2.3912 0.0000 27 6 3.5825 -1.1869 -0.0056 28 6 2.1783 -1.1843 -0.0005 29 1 -0.3633 -0.0001 -1.0277 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3633 0.8899 0.5137 32 1 1.6383 2.1389 0.0007 33 1 4.0707 2.1981 -0.0001 34 1 7.8966 1.0038 -0.0015 35 1 10.0871 0.1456 -2.1442 36 1 11.5393 -0.3482 -1.2409 37 1 10.1323 -1.4352 -1.3272 38 1 11.3997 1.8067 -0.2032 39 1 9.7130 2.3974 -0.3619 40 1 9.3824 2.4367 1.9440 41 1 11.1650 2.5218 2.0084 42 1 10.0666 3.3992 4.7285 43 1 9.8814 -1.3052 1.5345 44 1 11.5077 -0.6925 1.1086 45 1 6.2628 -3.2270 0.0000 46 1 3.8049 -3.3453 -0.0004 47 1 1.6337 -2.1169 -0.0014 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001046474887.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:17:34 Heat of formation + Delta-G solvation = 45.498657 kcal Electronic energy + Delta-G solvation = -29192.831279 eV Core-core repulsion = 25341.036478 eV Total energy + Delta-G solvation = -3851.794802 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.11419 -39.69903 -37.80448 -36.87286 -34.06356 -33.61930 -32.49268 -31.57728 -30.41749 -29.93820 -28.63815 -27.54062 -25.61893 -24.51197 -23.85561 -23.28015 -22.25642 -21.07265 -20.13732 -18.99177 -18.19068 -17.80195 -16.92693 -16.70816 -15.56621 -15.43459 -15.09598 -14.62621 -14.57412 -14.48190 -14.30670 -14.05677 -13.75361 -13.54126 -13.44737 -13.26218 -13.05841 -12.73191 -12.62399 -12.03876 -11.87566 -11.78072 -11.75419 -11.62635 -11.61094 -11.35133 -10.86318 -10.83263 -10.74077 -10.43540 -10.30782 -10.02702 -9.96703 -9.86389 -9.60048 -9.26730 -8.86472 -8.58780 -8.48792 -8.35813 -6.73147 -5.64588 -2.95989 0.08618 0.55140 1.79233 2.39962 3.29084 3.40728 3.44185 3.49798 3.52233 4.02192 4.07030 4.34907 4.48898 4.55125 4.56345 4.77075 4.81504 4.93049 5.07562 5.16699 5.23424 5.25962 5.30803 5.43003 5.53305 5.56341 5.58089 5.67253 5.78247 5.79283 5.83958 5.91833 6.05402 6.10479 6.19451 6.20435 6.26221 6.32830 6.39419 6.45737 6.58983 6.63130 6.73026 6.87065 7.16890 7.58533 7.62262 7.64762 7.87118 7.99911 8.32707 8.55789 9.29960 9.90110 10.56306 11.47540 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010711 B = 0.003342 C = 0.002909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2613.609123 B = 8377.063075 C = 9623.392884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.078 4.078 3 C -0.106 4.106 4 C -0.078 4.078 5 C 0.121 3.879 6 N -0.439 5.439 7 C 0.124 3.876 8 C 0.570 3.430 9 O -0.532 6.532 10 N -0.677 5.677 11 C 0.153 3.847 12 C -0.149 4.149 13 C -0.146 4.146 14 C 0.178 3.822 15 N -0.603 5.603 16 C -0.219 4.219 17 H 0.076 0.924 18 C -0.011 4.011 19 N -0.923 5.923 20 Si 0.909 3.091 21 H -0.280 1.280 22 H -0.291 1.291 23 H -0.292 1.292 24 C 0.131 3.869 25 C -0.121 4.121 26 C -0.068 4.068 27 C -0.085 4.085 28 C -0.106 4.106 29 H 0.072 0.928 30 H 0.068 0.932 31 H 0.069 0.931 32 H 0.131 0.869 33 H 0.140 0.860 34 H 0.408 0.592 35 H 0.050 0.950 36 H 0.064 0.936 37 H 0.071 0.929 38 H 0.074 0.926 39 H 0.065 0.935 40 H 0.046 0.954 41 H 0.044 0.956 42 H 0.250 0.750 43 H 0.055 0.945 44 H 0.027 0.973 45 H 0.151 0.849 46 H 0.144 0.856 47 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.192 -4.972 -13.651 22.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.078 4.078 3 C -0.126 4.126 4 C -0.096 4.096 5 C -0.003 4.003 6 N -0.150 5.150 7 C -0.030 4.030 8 C 0.354 3.646 9 O -0.409 6.409 10 N -0.326 5.326 11 C 0.067 3.933 12 C -0.208 4.208 13 C -0.185 4.185 14 C 0.053 3.947 15 N -0.329 5.329 16 C -0.348 4.348 17 H 0.094 0.906 18 C -0.206 4.206 19 N -0.572 5.572 20 Si 0.740 3.260 21 H -0.206 1.206 22 H -0.218 1.218 23 H -0.219 1.219 24 C 0.004 3.996 25 C -0.142 4.142 26 C -0.094 4.094 27 C -0.087 4.087 28 C -0.124 4.124 29 H 0.091 0.909 30 H 0.087 0.913 31 H 0.088 0.912 32 H 0.148 0.852 33 H 0.158 0.842 34 H 0.244 0.756 35 H 0.069 0.931 36 H 0.083 0.917 37 H 0.090 0.910 38 H 0.092 0.908 39 H 0.083 0.917 40 H 0.064 0.936 41 H 0.062 0.938 42 H 0.060 0.940 43 H 0.074 0.926 44 H 0.044 0.956 45 H 0.169 0.831 46 H 0.162 0.838 47 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -16.319 -4.707 -13.437 21.657 hybrid contribution -0.740 -0.397 1.148 1.422 sum -17.059 -5.104 -12.289 21.635 Atomic orbital electron populations 1.20852 0.90778 1.03126 1.02534 1.19743 0.96492 0.93023 0.98534 1.20813 0.93961 0.97828 0.99973 1.20915 0.93551 0.97079 0.98061 1.18853 0.88971 0.92940 0.99506 1.67852 1.07377 1.29959 1.09856 1.21523 0.94793 0.89403 0.97268 1.17770 0.85277 0.84333 0.77233 1.90724 1.65562 1.34077 1.50515 1.45663 1.07110 1.08156 1.71660 1.21574 0.78522 0.97292 0.95945 1.21993 1.00777 1.02052 0.95959 1.23228 1.00570 0.93581 1.01105 1.21152 1.01129 0.87747 0.84696 1.44443 1.86530 1.00622 1.01276 1.19100 1.42507 0.92863 0.80288 0.90584 1.24760 1.02609 0.95341 0.97920 1.69966 1.57475 0.97376 1.32346 0.86067 0.77155 0.77320 0.85426 1.20568 1.21814 1.21910 1.21898 0.97103 0.93320 0.87283 1.21768 0.95046 0.99022 0.98357 1.21416 0.93715 0.97699 0.96581 1.18936 0.94781 0.94038 1.00924 1.20812 0.92128 0.98254 1.01250 0.90891 0.91341 0.91213 0.85155 0.84212 0.75573 0.93068 0.91679 0.91035 0.90782 0.91679 0.93584 0.93817 0.93988 0.92632 0.95578 0.83145 0.83847 0.85214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.66 9.98 36.01 0.36 -0.30 16 2 C -0.08 -0.68 5.85 -104.93 -0.61 -1.29 16 3 C -0.11 -0.98 9.58 -39.94 -0.38 -1.36 16 4 C -0.08 -0.90 9.99 -39.41 -0.39 -1.30 16 5 C 0.12 1.69 6.61 -84.86 -0.56 1.13 16 6 N -0.44 -6.98 9.47 -7.54 -0.07 -7.06 16 7 C 0.12 2.02 6.75 -82.95 -0.56 1.46 16 8 C 0.57 10.46 7.20 -12.13 -0.09 10.37 16 9 O -0.53 -10.60 13.05 5.37 0.07 -10.53 16 10 N -0.68 -12.29 5.16 -46.42 -0.24 -12.53 16 11 C 0.15 2.84 0.82 -129.67 -0.11 2.74 16 12 C -0.15 -2.34 8.62 37.16 0.32 -2.02 16 13 C -0.15 -2.71 5.99 -24.90 -0.15 -2.86 16 14 C 0.18 4.33 5.36 -3.07 -0.02 4.32 16 15 N -0.60 -15.92 3.39 -170.07 -0.58 -16.50 16 16 C -0.22 -6.37 10.28 -15.06 -0.15 -6.52 16 17 H 0.08 2.19 7.83 -52.49 -0.41 1.78 16 18 C -0.01 -0.31 5.49 -17.43 -0.10 -0.41 16 19 N -0.92 -27.56 10.31 55.49 0.57 -26.99 16 20 Si 0.91 22.93 29.55 -169.99 -5.02 17.90 16 21 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 22 H -0.29 -7.33 7.11 56.52 0.40 -6.92 16 23 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 24 C 0.13 2.96 6.11 -2.52 -0.02 2.94 16 25 C -0.12 -1.65 9.54 -39.44 -0.38 -2.02 16 26 C -0.07 -0.76 9.88 -39.26 -0.39 -1.15 16 27 C -0.08 -1.02 5.75 -106.71 -0.61 -1.63 16 28 C -0.11 -0.99 9.37 -39.52 -0.37 -1.36 16 29 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 30 H 0.07 0.33 8.07 -51.93 -0.42 -0.08 16 31 H 0.07 0.34 8.08 -51.93 -0.42 -0.08 16 32 H 0.13 0.87 8.06 -52.49 -0.42 0.45 16 33 H 0.14 1.50 8.06 -52.49 -0.42 1.08 16 34 H 0.41 7.15 7.79 -40.82 -0.32 6.83 16 35 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.06 0.94 8.13 -51.93 -0.42 0.52 16 37 H 0.07 1.20 6.45 -51.93 -0.34 0.86 16 38 H 0.07 1.26 8.04 -51.93 -0.42 0.84 16 39 H 0.06 1.06 8.05 -51.93 -0.42 0.64 16 40 H 0.05 1.24 7.38 -51.93 -0.38 0.86 16 41 H 0.04 1.18 7.51 -51.93 -0.39 0.79 16 42 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 43 H 0.06 1.35 6.31 -51.93 -0.33 1.02 16 44 H 0.03 0.59 8.03 -51.93 -0.42 0.17 16 45 H 0.15 1.89 7.60 -52.49 -0.40 1.49 16 46 H 0.14 1.08 8.06 -52.49 -0.42 0.66 16 47 H 0.13 0.88 8.06 -52.49 -0.42 0.46 16 LS Contribution 381.52 15.07 5.75 5.75 Total: -1.00 -33.77 381.52 -10.47 -44.25 By element: Atomic # 1 Polarization: 11.72 SS G_CDS: -6.75 Total: 4.98 kcal Atomic # 6 Polarization: 4.94 SS G_CDS: -4.20 Total: 0.73 kcal Atomic # 7 Polarization: -62.76 SS G_CDS: -0.32 Total: -63.08 kcal Atomic # 8 Polarization: -10.60 SS G_CDS: 0.07 Total: -10.53 kcal Atomic # 14 Polarization: 22.93 SS G_CDS: -5.02 Total: 17.90 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -33.77 -10.47 -44.25 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046474887.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.745 kcal (2) G-P(sol) polarization free energy of solvation -33.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.247 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds