Wall clock time and date at job start Tue Mar 31 2020 22:17:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.39436 * 119.54083 * 2 1 4 4 C 1.35998 * 121.08440 * 180.02562 * 3 2 1 5 5 C 1.40824 * 119.73629 * 359.97438 * 4 3 2 6 6 N 1.33265 * 120.98872 * 180.02562 * 5 4 3 7 7 C 1.31875 * 121.30286 * 179.97438 * 6 5 4 8 8 C 1.48280 * 119.24247 * 179.97438 * 7 6 5 9 9 O 1.21497 * 120.00047 * 180.02562 * 8 7 6 10 10 N 1.34776 * 119.99884 * 0.02562 * 8 7 6 11 11 C 1.46495 * 119.99960 * 180.02562 * 10 8 7 12 12 C 1.52999 * 110.89049 * 62.42375 * 11 10 8 13 13 C 1.55157 * 111.00649 * 186.35318 * 11 10 8 14 14 C 1.54314 * 102.94549 * 82.56853 * 13 11 10 15 15 N 1.47022 * 107.27510 * 22.19325 * 14 13 11 16 16 C 1.36933 * 125.65396 * 181.02322 * 15 14 13 17 17 H 1.08001 * 120.00381 * 180.02562 * 16 15 14 18 18 C 1.38814 * 120.00051 * 0.04273 * 16 15 14 19 19 N 1.31623 * 119.99477 * 0.02562 * 18 16 15 20 20 Si 1.86791 * 120.00327 * 180.02562 * 18 16 15 21 21 H 1.48510 * 109.47022 * 0.02562 * 20 18 16 22 22 H 1.48497 * 109.47397 * 119.99893 * 20 18 16 23 23 H 1.48498 * 109.47429 * 240.00409 * 20 18 16 24 24 C 1.47430 * 108.70087 * 1.06129 * 15 14 13 25 25 C 1.40284 * 121.51711 * 0.02562 * 7 6 5 26 26 C 1.36502 * 119.81591 * 359.97438 * 25 7 6 27 27 C 1.40754 * 118.24335 * 0.25891 * 26 25 7 28 28 C 1.36128 * 119.54555 * 180.02562 * 2 1 3 29 29 H 1.09005 * 109.46728 * 90.00491 * 1 2 3 30 30 H 1.08997 * 109.46848 * 209.99627 * 1 2 3 31 31 H 1.08992 * 109.47095 * 330.00321 * 1 2 3 32 32 H 1.08002 * 119.45895 * 0.04204 * 3 2 1 33 33 H 1.08002 * 120.12732 * 180.02562 * 4 3 2 34 34 H 0.96999 * 119.99812 * 359.97438 * 10 8 7 35 35 H 1.09006 * 109.46592 * 60.70068 * 12 11 10 36 36 H 1.08996 * 109.47175 * 180.70033 * 12 11 10 37 37 H 1.09005 * 109.46883 * 300.70830 * 12 11 10 38 38 H 1.08997 * 110.72065 * 200.93830 * 13 11 10 39 39 H 1.09002 * 110.71516 * 324.20526 * 13 11 10 40 40 H 1.09000 * 109.88341 * 262.77784 * 14 13 11 41 41 H 1.09007 * 109.88449 * 141.61309 * 14 13 11 42 42 H 0.97003 * 119.99238 * 179.97438 * 19 18 16 43 43 H 1.08996 * 110.37044 * 217.03131 * 24 15 14 44 44 H 1.09001 * 110.45900 * 94.75273 * 24 15 14 45 45 H 1.07997 * 120.08725 * 179.97438 * 25 7 6 46 46 H 1.08002 * 120.87411 * 179.97438 * 26 25 7 47 47 H 1.08001 * 120.17284 * 0.02562 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1945 1.2131 0.0000 4 6 3.5540 1.2497 -0.0005 5 6 4.2852 0.0462 -0.0005 6 7 5.6178 0.0530 -0.0005 7 6 6.3087 -1.0703 0.0000 8 6 7.7903 -1.0095 -0.0006 9 8 8.4404 -2.0359 -0.0006 10 7 8.4157 0.1844 -0.0011 11 6 9.8794 0.2445 -0.0023 12 6 10.4507 -0.3943 -1.2697 13 6 10.3762 1.7057 0.1576 14 6 10.3105 1.9282 1.6832 15 7 10.3507 0.6035 2.3197 16 6 10.2937 0.3631 3.6666 17 1 10.3310 -0.6510 4.0362 18 6 10.1875 1.4228 4.5569 19 7 10.1412 2.6587 4.1063 20 14 10.1104 1.0950 6.3942 21 1 10.1809 -0.3680 6.6394 22 1 11.2537 1.7644 7.0649 23 1 8.8359 1.6278 6.9391 24 6 10.4635 -0.4232 1.2677 25 6 5.6743 -2.3215 0.0000 26 6 4.3110 -2.3912 0.0000 27 6 3.5825 -1.1869 -0.0056 28 6 2.1783 -1.1843 -0.0005 29 1 -0.3633 -0.0001 -1.0277 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3633 0.8899 0.5137 32 1 1.6383 2.1389 0.0007 33 1 4.0707 2.1981 -0.0001 34 1 7.8966 1.0038 -0.0015 35 1 10.0871 0.1456 -2.1442 36 1 11.5393 -0.3482 -1.2409 37 1 10.1323 -1.4352 -1.3272 38 1 11.3997 1.8067 -0.2032 39 1 9.7130 2.3974 -0.3619 40 1 9.3824 2.4367 1.9440 41 1 11.1650 2.5218 2.0084 42 1 10.0666 3.3992 4.7285 43 1 9.8814 -1.3052 1.5345 44 1 11.5077 -0.6925 1.1086 45 1 6.2628 -3.2270 0.0000 46 1 3.8049 -3.3453 -0.0004 47 1 1.6337 -2.1169 -0.0014 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001046474887.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:17:33 Heat of formation + Delta-G solvation = 24.290837 kcal Electronic energy + Delta-G solvation = -29193.750919 eV Core-core repulsion = 25341.036478 eV Total energy + Delta-G solvation = -3852.714442 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.11728 -41.06801 -39.11217 -38.10706 -35.75824 -34.68348 -33.76499 -32.97884 -31.61665 -31.28841 -30.37518 -28.34610 -27.53624 -25.63089 -25.28303 -24.44620 -23.10617 -22.47443 -21.90132 -20.49967 -19.39089 -18.91842 -18.63518 -17.80503 -17.07802 -16.69388 -16.52792 -16.37169 -15.69179 -15.66872 -15.39614 -15.28369 -15.00932 -14.98081 -14.35177 -14.19826 -14.09300 -14.03797 -13.89383 -13.55769 -13.42093 -13.16947 -13.10422 -12.87748 -12.77559 -12.46333 -12.38533 -12.22273 -12.13584 -12.05204 -11.99653 -11.73154 -11.65365 -11.61010 -11.13025 -10.73789 -10.53608 -10.06049 -9.73812 -9.19845 -8.88145 -7.87491 -5.21275 -0.85370 -0.35994 0.89997 1.38617 1.40579 1.41653 1.52164 2.03760 2.23338 2.46050 2.95380 3.06312 3.30578 3.50585 3.57082 3.65802 3.71919 3.77341 3.87678 4.01296 4.02560 4.16392 4.16803 4.32878 4.41534 4.61323 4.65652 4.67254 4.74620 4.77788 4.84979 4.89580 4.91258 4.91604 5.01326 5.02030 5.05314 5.06114 5.22224 5.30525 5.33908 5.40349 5.45908 5.55144 5.60717 5.65123 5.74576 5.85609 6.17963 6.41815 6.70773 7.09368 7.15525 7.75408 8.40040 9.22665 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010711 B = 0.003342 C = 0.002909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2613.609123 B = 8377.063075 C = 9623.392884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.074 4.074 3 C -0.093 4.093 4 C -0.104 4.104 5 C 0.092 3.908 6 N -0.461 5.461 7 C 0.094 3.906 8 C 0.566 3.434 9 O -0.556 6.556 10 N -0.680 5.680 11 C 0.162 3.838 12 C -0.139 4.139 13 C -0.129 4.129 14 C 0.187 3.813 15 N -0.621 5.621 16 C -0.240 4.240 17 H 0.069 0.931 18 C -0.062 4.062 19 N -0.946 5.946 20 Si 0.975 3.025 21 H -0.272 1.272 22 H -0.286 1.286 23 H -0.291 1.291 24 C 0.128 3.872 25 C -0.140 4.140 26 C -0.051 4.051 27 C -0.095 4.095 28 C -0.106 4.106 29 H 0.087 0.913 30 H 0.081 0.919 31 H 0.079 0.921 32 H 0.158 0.842 33 H 0.137 0.863 34 H 0.409 0.591 35 H 0.075 0.925 36 H 0.081 0.919 37 H 0.058 0.942 38 H 0.098 0.902 39 H 0.092 0.908 40 H 0.012 0.988 41 H 0.012 0.988 42 H 0.247 0.753 43 H 0.032 0.968 44 H 0.032 0.968 45 H 0.153 0.847 46 H 0.186 0.814 47 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.045 -5.609 -14.653 25.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.075 4.075 3 C -0.113 4.113 4 C -0.123 4.123 5 C -0.032 4.032 6 N -0.173 5.173 7 C -0.059 4.059 8 C 0.351 3.649 9 O -0.434 6.434 10 N -0.329 5.329 11 C 0.075 3.925 12 C -0.197 4.197 13 C -0.167 4.167 14 C 0.062 3.938 15 N -0.347 5.347 16 C -0.370 4.370 17 H 0.087 0.913 18 C -0.255 4.255 19 N -0.595 5.595 20 Si 0.803 3.197 21 H -0.197 1.197 22 H -0.213 1.213 23 H -0.218 1.218 24 C 0.001 3.999 25 C -0.161 4.161 26 C -0.076 4.076 27 C -0.097 4.097 28 C -0.125 4.125 29 H 0.105 0.895 30 H 0.099 0.901 31 H 0.098 0.902 32 H 0.176 0.824 33 H 0.155 0.845 34 H 0.246 0.754 35 H 0.094 0.906 36 H 0.100 0.900 37 H 0.078 0.922 38 H 0.116 0.884 39 H 0.110 0.890 40 H 0.030 0.970 41 H 0.030 0.970 42 H 0.056 0.944 43 H 0.051 0.949 44 H 0.050 0.950 45 H 0.170 0.830 46 H 0.203 0.797 47 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -19.168 -5.355 -14.465 24.604 hybrid contribution -0.051 -0.169 1.472 1.483 sum -19.220 -5.524 -12.993 23.848 Atomic orbital electron populations 1.20931 0.88076 1.04328 1.03759 1.20201 0.98390 0.92399 0.96463 1.21215 0.93062 0.99600 0.97414 1.21054 0.94738 0.96446 1.00062 1.19287 0.88521 0.94789 1.00607 1.67731 1.08793 1.30190 1.10632 1.21325 0.93586 0.90821 1.00137 1.18185 0.86505 0.83872 0.76326 1.90686 1.66491 1.34649 1.51613 1.45704 1.06971 1.08408 1.71848 1.21515 0.78901 0.96757 0.95327 1.21920 1.01638 1.01234 0.94930 1.23111 1.02802 0.94139 0.96654 1.20915 0.97919 0.86391 0.88603 1.44692 1.86378 1.02310 1.01330 1.19365 1.42711 0.92767 0.82116 0.91293 1.25566 1.02607 0.95193 1.02168 1.70173 1.57974 0.97898 1.33420 0.85062 0.76938 0.77536 0.80134 1.19655 1.21298 1.21818 1.22017 0.97272 0.92142 0.88425 1.21833 0.96337 0.97972 0.99909 1.21855 0.92643 0.99209 0.93915 1.19252 0.96252 0.93525 1.00700 1.21191 0.90869 1.00106 1.00312 0.89456 0.90055 0.90221 0.82393 0.84519 0.75429 0.90647 0.90045 0.92248 0.88371 0.88974 0.97005 0.97008 0.94374 0.94940 0.95004 0.82957 0.79708 0.81935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.79 9.98 71.24 0.71 -0.08 16 2 C -0.07 -1.04 5.85 -20.07 -0.12 -1.15 16 3 C -0.09 -1.52 9.58 22.04 0.21 -1.31 16 4 C -0.10 -2.41 9.99 22.38 0.22 -2.19 16 5 C 0.09 2.59 6.61 40.47 0.27 2.85 16 6 N -0.46 -15.38 9.47 -177.76 -1.68 -17.06 16 7 C 0.09 3.20 6.75 42.31 0.29 3.48 16 8 C 0.57 21.75 7.20 86.92 0.63 22.37 16 9 O -0.56 -23.17 13.05 -3.71 -0.05 -23.22 16 10 N -0.68 -25.54 5.16 -419.07 -2.16 -27.70 16 11 C 0.16 6.03 0.82 5.00 0.00 6.03 16 12 C -0.14 -4.18 8.62 71.98 0.62 -3.56 16 13 C -0.13 -4.71 5.99 31.78 0.19 -4.51 16 14 C 0.19 9.45 5.36 86.73 0.47 9.92 16 15 N -0.62 -34.13 3.39 -691.97 -2.35 -36.48 16 16 C -0.24 -14.51 10.28 84.03 0.86 -13.65 16 17 H 0.07 4.13 7.83 -2.91 -0.02 4.11 16 18 C -0.06 -3.72 5.49 84.86 0.47 -3.25 16 19 N -0.95 -58.43 10.31 21.65 0.22 -58.21 16 20 Si 0.97 48.25 29.55 68.60 2.03 50.27 16 21 H -0.27 -12.94 7.11 99.48 0.71 -12.23 16 22 H -0.29 -13.88 7.11 99.48 0.71 -13.18 16 23 H -0.29 -14.30 7.11 99.48 0.71 -13.59 16 24 C 0.13 5.95 6.11 86.86 0.53 6.48 16 25 C -0.14 -3.85 9.54 22.36 0.21 -3.64 16 26 C -0.05 -1.05 9.88 22.48 0.22 -0.83 16 27 C -0.10 -2.15 5.75 -21.22 -0.12 -2.27 16 28 C -0.11 -1.65 9.37 22.31 0.21 -1.44 16 29 H 0.09 0.42 8.14 -2.38 -0.02 0.41 16 30 H 0.08 0.40 8.07 -2.39 -0.02 0.38 16 31 H 0.08 0.43 8.08 -2.39 -0.02 0.42 16 32 H 0.16 1.62 8.06 -2.91 -0.02 1.59 16 33 H 0.14 3.07 8.06 -2.91 -0.02 3.04 16 34 H 0.41 14.97 7.79 -92.71 -0.72 14.25 16 35 H 0.07 1.93 8.14 -2.38 -0.02 1.91 16 36 H 0.08 2.18 8.13 -2.39 -0.02 2.16 16 37 H 0.06 1.96 6.45 -2.38 -0.02 1.95 16 38 H 0.10 3.15 8.04 -2.39 -0.02 3.13 16 39 H 0.09 2.89 8.05 -2.39 -0.02 2.87 16 40 H 0.01 0.67 7.38 -2.39 -0.02 0.65 16 41 H 0.01 0.66 7.51 -2.38 -0.02 0.64 16 42 H 0.25 14.76 8.31 -92.71 -0.77 13.99 16 43 H 0.03 1.65 6.31 -2.39 -0.02 1.64 16 44 H 0.03 1.45 8.03 -2.39 -0.02 1.43 16 45 H 0.15 3.97 7.60 -2.91 -0.02 3.95 16 46 H 0.19 2.13 8.06 -2.91 -0.02 2.10 16 47 H 0.16 1.41 8.06 -2.91 -0.02 1.38 16 Total: -1.00 -78.27 381.52 2.15 -76.12 By element: Atomic # 1 Polarization: 22.74 SS G_CDS: 0.27 Total: 23.01 kcal Atomic # 6 Polarization: 7.39 SS G_CDS: 5.87 Total: 13.26 kcal Atomic # 7 Polarization: -133.48 SS G_CDS: -5.97 Total: -139.45 kcal Atomic # 8 Polarization: -23.17 SS G_CDS: -0.05 Total: -23.22 kcal Atomic # 14 Polarization: 48.25 SS G_CDS: 2.03 Total: 50.27 kcal Total: -78.27 2.15 -76.12 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046474887.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.413 kcal (2) G-P(sol) polarization free energy of solvation -78.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.122 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds