Wall clock time and date at job start Tue Mar 31 2020 22:12:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.36539 * 120.09685 * 2 1 4 4 C 1.40725 * 118.24244 * 180.25936 * 3 2 1 5 5 C 1.40430 * 121.27154 * 179.68586 * 4 3 2 6 6 C 1.36126 * 119.64614 * 180.02562 * 5 4 3 7 7 C 1.39435 * 120.91793 * 359.97438 * 6 5 4 8 8 C 1.35993 * 121.09315 * 359.97438 * 7 6 5 9 9 C 1.40839 * 119.73786 * 0.04597 * 8 7 6 10 10 N 1.33236 * 121.00246 * 179.97438 * 9 8 7 11 11 C 1.31903 * 121.30007 * 180.02562 * 10 9 8 12 12 C 1.48271 * 119.24230 * 179.97438 * 11 10 9 13 13 O 1.21505 * 119.99986 * 174.43517 * 12 11 10 14 14 N 1.34774 * 119.99820 * 354.44020 * 12 11 10 15 15 C 1.46499 * 120.00030 * 179.97438 * 14 12 11 16 16 C 1.53005 * 110.88525 * 297.57011 * 15 14 12 17 17 C 1.55160 * 111.03979 * 173.66900 * 15 14 12 18 18 C 1.54333 * 103.01801 * 277.21970 * 17 15 14 19 19 N 1.47029 * 107.26548 * 338.13446 * 18 17 15 20 20 C 1.36938 * 125.64722 * 178.85025 * 19 18 17 21 21 H 1.08003 * 119.99642 * 179.69563 * 20 19 18 22 22 C 1.38806 * 120.00202 * 359.69606 * 20 19 18 23 23 N 1.31629 * 120.00119 * 359.97438 * 22 20 19 24 24 Si 1.86799 * 120.00178 * 179.97438 * 22 20 19 25 25 H 1.48502 * 109.47343 * 180.02562 * 24 22 20 26 26 H 1.48504 * 109.46933 * 299.99979 * 24 22 20 27 27 H 1.48496 * 109.47136 * 59.99858 * 24 22 20 28 28 C 1.47424 * 108.70109 * 358.59363 * 19 18 17 29 29 H 1.08999 * 109.47291 * 263.41034 * 1 2 3 30 30 H 1.09002 * 109.46641 * 23.40510 * 1 2 3 31 31 H 1.08994 * 109.47177 * 143.40309 * 1 2 3 32 32 H 1.08003 * 120.87752 * 359.97438 * 3 2 1 33 33 H 1.08000 * 120.17757 * 359.97438 * 5 4 3 34 34 H 1.08000 * 119.54169 * 180.02562 * 6 5 4 35 35 H 1.07998 * 119.45697 * 180.02562 * 7 6 5 36 36 H 1.07996 * 120.13334 * 179.97438 * 8 7 6 37 37 H 0.97004 * 119.99890 * 359.97438 * 14 12 11 38 38 H 1.09003 * 109.46911 * 182.42423 * 16 15 14 39 39 H 1.09000 * 109.47179 * 302.42865 * 16 15 14 40 40 H 1.09001 * 109.46681 * 62.42627 * 16 15 14 41 41 H 1.09005 * 110.71690 * 35.77160 * 17 15 14 42 42 H 1.08995 * 110.72100 * 158.87099 * 17 15 14 43 43 H 1.09000 * 109.99300 * 218.66456 * 18 17 15 44 44 H 1.08994 * 109.78249 * 97.49317 * 18 17 15 45 45 H 0.96993 * 120.00146 * 180.02562 * 23 22 20 46 46 H 1.08997 * 110.36815 * 143.19464 * 28 19 18 47 47 H 1.09005 * 110.36239 * 265.40509 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1916 1.1813 0.0000 4 6 3.5981 1.1358 -0.0056 5 6 4.3655 2.3118 -0.0125 6 6 5.7243 2.2292 -0.0184 7 6 6.3668 0.9917 -0.0170 8 6 5.6569 -0.1682 -0.0094 9 6 4.2492 -0.1257 -0.0036 10 7 3.5287 -1.2464 0.0034 11 6 2.2101 -1.2134 0.0084 12 6 1.4537 -2.4887 0.0156 13 8 0.2434 -2.4765 0.1222 14 7 2.1087 -3.6613 -0.0961 15 6 1.3614 -4.9213 -0.0884 16 6 0.6279 -5.1124 1.2407 17 6 2.2949 -6.1244 -0.3864 18 6 2.3805 -6.1246 -1.9273 19 7 1.2014 -5.4044 -2.4300 20 6 0.9148 -5.1639 -3.7473 21 1 0.0166 -4.6273 -4.0152 22 6 1.7786 -5.6096 -4.7382 23 7 2.8736 -6.2631 -4.4116 24 14 1.3873 -5.2821 -6.5351 25 1 2.4587 -5.8568 -7.3878 26 1 0.0881 -5.9125 -6.8816 27 1 1.3035 -3.8174 -6.7645 28 6 0.3757 -4.9895 -1.2814 29 1 -0.3634 -0.1179 1.0208 30 1 -0.3633 0.9431 -0.4082 31 1 -0.3633 -0.8250 -0.6126 32 1 1.6676 2.1257 -0.0004 33 1 3.8803 3.2767 -0.0141 34 1 6.3128 3.1347 -0.0232 35 1 7.4461 0.9537 -0.0213 36 1 6.1705 -1.1182 -0.0088 37 1 3.0749 -3.6709 -0.1815 38 1 0.1157 -6.0746 1.2380 39 1 1.3469 -5.0858 2.0596 40 1 -0.1014 -4.3129 1.3714 41 1 3.2784 -5.9683 0.0568 42 1 1.8537 -7.0534 -0.0254 43 1 2.3763 -7.1487 -2.3006 44 1 3.2898 -5.6153 -2.2463 45 1 3.4774 -6.5743 -5.1040 46 1 -0.0656 -4.0100 -1.4654 47 1 -0.4045 -5.7262 -1.0893 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001046496063.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:12:52 Heat of formation + Delta-G solvation = 52.059423 kcal Electronic energy + Delta-G solvation = -29719.755763 eV Core-core repulsion = 25868.245457 eV Total energy + Delta-G solvation = -3851.510305 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.17806 -39.69120 -37.74501 -36.68357 -34.48620 -33.71887 -31.91711 -31.70949 -30.51812 -29.69153 -28.61644 -27.09409 -25.67165 -25.30965 -23.59097 -22.66506 -22.20974 -21.34098 -20.16730 -19.00584 -18.26221 -17.84140 -16.92914 -16.63260 -15.48094 -15.38502 -15.27202 -14.74896 -14.56233 -14.50514 -14.12756 -13.89793 -13.65414 -13.49286 -13.19527 -13.11705 -12.91947 -12.72084 -12.19432 -12.06266 -11.85028 -11.82270 -11.79281 -11.69794 -11.60080 -11.56616 -10.85300 -10.82341 -10.49248 -10.35583 -10.27769 -10.07310 -9.93710 -9.85568 -9.60190 -9.08517 -8.84217 -8.57246 -8.44462 -8.37770 -6.74116 -5.65093 -2.96799 0.09719 0.56939 1.80810 2.43059 3.29545 3.41204 3.44794 3.48487 3.49810 4.03775 4.05546 4.38339 4.55584 4.57953 4.60755 4.76609 4.92531 4.96332 5.11418 5.16025 5.22422 5.42165 5.52173 5.54958 5.59751 5.66426 5.77793 5.78731 5.83548 5.85114 5.97550 6.05047 6.16830 6.17976 6.20468 6.21640 6.28056 6.38743 6.42496 6.49709 6.60348 6.68934 6.73323 6.86180 7.16914 7.57874 7.61091 7.63996 7.85879 7.99354 8.32206 8.55711 9.29116 9.89418 10.55602 11.46887 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010337 B = 0.003698 C = 0.003304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2708.112110 B = 7570.086482 C = 8471.989369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.083 4.083 3 C -0.076 4.076 4 C -0.083 4.083 5 C -0.104 4.104 6 C -0.110 4.110 7 C -0.111 4.111 8 C -0.080 4.080 9 C 0.118 3.882 10 N -0.438 5.438 11 C 0.124 3.876 12 C 0.570 3.430 13 O -0.526 6.526 14 N -0.677 5.677 15 C 0.154 3.846 16 C -0.148 4.148 17 C -0.146 4.146 18 C 0.178 3.822 19 N -0.603 5.603 20 C -0.222 4.222 21 H 0.075 0.925 22 C -0.009 4.009 23 N -0.924 5.924 24 Si 0.909 3.091 25 H -0.291 1.291 26 H -0.285 1.285 27 H -0.287 1.287 28 C 0.132 3.868 29 H 0.076 0.924 30 H 0.056 0.944 31 H 0.104 0.896 32 H 0.143 0.857 33 H 0.130 0.870 34 H 0.127 0.873 35 H 0.130 0.870 36 H 0.138 0.862 37 H 0.408 0.592 38 H 0.064 0.936 39 H 0.050 0.950 40 H 0.071 0.929 41 H 0.064 0.936 42 H 0.073 0.927 43 H 0.043 0.957 44 H 0.046 0.954 45 H 0.251 0.749 46 H 0.056 0.944 47 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.175 15.150 13.772 20.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.085 4.085 3 C -0.101 4.101 4 C -0.085 4.085 5 C -0.123 4.123 6 C -0.128 4.128 7 C -0.131 4.131 8 C -0.098 4.098 9 C -0.006 4.006 10 N -0.149 5.149 11 C -0.030 4.030 12 C 0.355 3.645 13 O -0.403 6.403 14 N -0.326 5.326 15 C 0.067 3.933 16 C -0.207 4.207 17 C -0.185 4.185 18 C 0.053 3.947 19 N -0.329 5.329 20 C -0.350 4.350 21 H 0.093 0.907 22 C -0.205 4.205 23 N -0.572 5.572 24 Si 0.740 3.260 25 H -0.216 1.216 26 H -0.212 1.212 27 H -0.213 1.213 28 C 0.005 3.995 29 H 0.095 0.905 30 H 0.075 0.925 31 H 0.123 0.877 32 H 0.161 0.839 33 H 0.148 0.852 34 H 0.145 0.855 35 H 0.148 0.852 36 H 0.156 0.844 37 H 0.244 0.756 38 H 0.083 0.917 39 H 0.069 0.931 40 H 0.090 0.910 41 H 0.083 0.917 42 H 0.092 0.908 43 H 0.061 0.939 44 H 0.064 0.936 45 H 0.061 0.939 46 H 0.074 0.926 47 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges 3.930 14.267 13.619 20.111 hybrid contribution 0.134 0.988 -1.161 1.531 sum 4.064 15.255 12.457 20.110 Atomic orbital electron populations 1.21083 0.88705 1.03498 1.03951 1.20577 0.98687 0.92042 0.97225 1.21331 0.92389 0.98428 0.98001 1.18958 0.94242 0.94536 1.00794 1.20965 0.94093 0.97022 1.00198 1.20963 0.94639 0.98031 0.99124 1.20896 1.00455 0.92019 0.99736 1.20913 0.91116 0.99551 0.98253 1.18849 0.94201 0.87721 0.99792 1.67843 1.06623 1.30572 1.09837 1.21401 0.89495 0.94226 0.97895 1.17737 0.86653 0.82777 0.77371 1.90676 1.12852 1.86409 1.50398 1.45691 1.11196 1.04681 1.71023 1.21566 0.93403 0.82723 0.95599 1.21989 1.00591 1.02561 0.95557 1.23230 0.98207 0.96163 1.00898 1.21150 0.90882 0.97140 0.85525 1.44429 1.22679 1.64864 1.00910 1.19005 1.05175 1.30180 0.80672 0.90679 1.24749 0.97121 1.00758 0.97829 1.69940 1.13022 1.43017 1.31212 0.86230 0.77144 0.77714 0.84889 1.21638 1.21200 1.21343 1.21884 0.92479 0.98591 0.86544 0.90508 0.92484 0.87736 0.83931 0.85223 0.85533 0.85204 0.84371 0.75639 0.91745 0.93100 0.91003 0.91703 0.90832 0.93869 0.93582 0.93860 0.92624 0.95634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.49 8.67 36.00 0.31 -1.17 16 2 C -0.08 -1.16 5.89 -104.48 -0.62 -1.78 16 3 C -0.08 -0.89 9.50 -39.26 -0.37 -1.26 16 4 C -0.08 -1.02 5.75 -106.71 -0.61 -1.64 16 5 C -0.10 -0.97 9.77 -39.52 -0.39 -1.36 16 6 C -0.11 -0.92 9.95 -39.90 -0.40 -1.31 16 7 C -0.11 -1.01 9.94 -39.94 -0.40 -1.41 16 8 C -0.08 -0.93 9.99 -39.40 -0.39 -1.32 16 9 C 0.12 1.66 6.61 -84.85 -0.56 1.10 16 10 N -0.44 -7.01 9.48 -7.54 -0.07 -7.08 16 11 C 0.12 2.03 6.75 -82.96 -0.56 1.47 16 12 C 0.57 10.24 7.14 -12.14 -0.09 10.15 16 13 O -0.53 -9.87 10.03 5.36 0.05 -9.81 16 14 N -0.68 -12.15 5.16 -46.42 -0.24 -12.39 16 15 C 0.15 2.81 0.82 -129.67 -0.11 2.70 16 16 C -0.15 -2.29 8.59 37.16 0.32 -1.97 16 17 C -0.15 -2.69 5.99 -24.89 -0.15 -2.84 16 18 C 0.18 4.31 5.37 -3.06 -0.02 4.30 16 19 N -0.60 -15.77 3.39 -170.07 -0.58 -16.34 16 20 C -0.22 -6.40 10.28 -15.06 -0.15 -6.55 16 21 H 0.08 2.13 7.83 -52.48 -0.41 1.72 16 22 C -0.01 -0.25 5.49 -17.43 -0.10 -0.35 16 23 N -0.92 -27.47 10.31 55.49 0.57 -26.89 16 24 Si 0.91 22.79 29.55 -169.99 -5.02 17.76 16 25 H -0.29 -7.29 7.11 56.52 0.40 -6.88 16 26 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 27 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 28 C 0.13 2.93 6.10 -2.53 -0.02 2.91 16 29 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 30 H 0.06 0.59 8.04 -51.93 -0.42 0.17 16 31 H 0.10 1.63 5.81 -51.93 -0.30 1.33 16 32 H 0.14 1.20 8.06 -52.48 -0.42 0.77 16 33 H 0.13 0.86 8.06 -52.49 -0.42 0.44 16 34 H 0.13 0.70 8.06 -52.49 -0.42 0.28 16 35 H 0.13 0.83 8.06 -52.49 -0.42 0.41 16 36 H 0.14 1.47 8.06 -52.49 -0.42 1.05 16 37 H 0.41 7.13 7.81 -40.82 -0.32 6.81 16 38 H 0.06 0.91 8.11 -51.93 -0.42 0.49 16 39 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.07 1.17 6.53 -51.93 -0.34 0.83 16 41 H 0.06 1.06 8.05 -51.93 -0.42 0.64 16 42 H 0.07 1.24 8.01 -51.93 -0.42 0.83 16 43 H 0.04 1.16 7.52 -51.93 -0.39 0.77 16 44 H 0.05 1.23 7.37 -51.93 -0.38 0.85 16 45 H 0.25 7.30 8.31 -40.82 -0.34 6.96 16 46 H 0.06 1.31 6.31 -51.93 -0.33 0.99 16 47 H 0.03 0.57 8.04 -51.93 -0.42 0.15 16 LS Contribution 376.15 15.07 5.67 5.67 Total: -1.00 -32.85 376.15 -10.56 -43.41 By element: Atomic # 1 Polarization: 12.66 SS G_CDS: -6.66 Total: 6.00 kcal Atomic # 6 Polarization: 3.96 SS G_CDS: -4.29 Total: -0.33 kcal Atomic # 7 Polarization: -62.39 SS G_CDS: -0.32 Total: -62.71 kcal Atomic # 8 Polarization: -9.87 SS G_CDS: 0.05 Total: -9.81 kcal Atomic # 14 Polarization: 22.79 SS G_CDS: -5.02 Total: 17.76 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -32.85 -10.56 -43.41 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046496063.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.472 kcal (2) G-P(sol) polarization free energy of solvation -32.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.412 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds