Wall clock time and date at job start Tue Mar 31 2020 22:12:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.36539 * 120.09685 * 2 1 4 4 C 1.40725 * 118.24244 * 180.25936 * 3 2 1 5 5 C 1.40430 * 121.27154 * 179.68586 * 4 3 2 6 6 C 1.36126 * 119.64614 * 180.02562 * 5 4 3 7 7 C 1.39435 * 120.91793 * 359.97438 * 6 5 4 8 8 C 1.35993 * 121.09315 * 359.97438 * 7 6 5 9 9 C 1.40839 * 119.73786 * 0.04597 * 8 7 6 10 10 N 1.33236 * 121.00246 * 179.97438 * 9 8 7 11 11 C 1.31903 * 121.30007 * 180.02562 * 10 9 8 12 12 C 1.48271 * 119.24230 * 179.97438 * 11 10 9 13 13 O 1.21505 * 119.99986 * 174.43517 * 12 11 10 14 14 N 1.34774 * 119.99820 * 354.44020 * 12 11 10 15 15 C 1.46499 * 120.00030 * 179.97438 * 14 12 11 16 16 C 1.53005 * 110.88525 * 297.57011 * 15 14 12 17 17 C 1.55160 * 111.03979 * 173.66900 * 15 14 12 18 18 C 1.54333 * 103.01801 * 277.21970 * 17 15 14 19 19 N 1.47029 * 107.26548 * 338.13446 * 18 17 15 20 20 C 1.36938 * 125.64722 * 178.85025 * 19 18 17 21 21 H 1.08003 * 119.99642 * 179.69563 * 20 19 18 22 22 C 1.38806 * 120.00202 * 359.69606 * 20 19 18 23 23 N 1.31629 * 120.00119 * 359.97438 * 22 20 19 24 24 Si 1.86799 * 120.00178 * 179.97438 * 22 20 19 25 25 H 1.48502 * 109.47343 * 180.02562 * 24 22 20 26 26 H 1.48504 * 109.46933 * 299.99979 * 24 22 20 27 27 H 1.48496 * 109.47136 * 59.99858 * 24 22 20 28 28 C 1.47424 * 108.70109 * 358.59363 * 19 18 17 29 29 H 1.08999 * 109.47291 * 263.41034 * 1 2 3 30 30 H 1.09002 * 109.46641 * 23.40510 * 1 2 3 31 31 H 1.08994 * 109.47177 * 143.40309 * 1 2 3 32 32 H 1.08003 * 120.87752 * 359.97438 * 3 2 1 33 33 H 1.08000 * 120.17757 * 359.97438 * 5 4 3 34 34 H 1.08000 * 119.54169 * 180.02562 * 6 5 4 35 35 H 1.07998 * 119.45697 * 180.02562 * 7 6 5 36 36 H 1.07996 * 120.13334 * 179.97438 * 8 7 6 37 37 H 0.97004 * 119.99890 * 359.97438 * 14 12 11 38 38 H 1.09003 * 109.46911 * 182.42423 * 16 15 14 39 39 H 1.09000 * 109.47179 * 302.42865 * 16 15 14 40 40 H 1.09001 * 109.46681 * 62.42627 * 16 15 14 41 41 H 1.09005 * 110.71690 * 35.77160 * 17 15 14 42 42 H 1.08995 * 110.72100 * 158.87099 * 17 15 14 43 43 H 1.09000 * 109.99300 * 218.66456 * 18 17 15 44 44 H 1.08994 * 109.78249 * 97.49317 * 18 17 15 45 45 H 0.96993 * 120.00146 * 180.02562 * 23 22 20 46 46 H 1.08997 * 110.36815 * 143.19464 * 28 19 18 47 47 H 1.09005 * 110.36239 * 265.40509 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1916 1.1813 0.0000 4 6 3.5981 1.1358 -0.0056 5 6 4.3655 2.3118 -0.0125 6 6 5.7243 2.2292 -0.0184 7 6 6.3668 0.9917 -0.0170 8 6 5.6569 -0.1682 -0.0094 9 6 4.2492 -0.1257 -0.0036 10 7 3.5287 -1.2464 0.0034 11 6 2.2101 -1.2134 0.0084 12 6 1.4537 -2.4887 0.0156 13 8 0.2434 -2.4765 0.1222 14 7 2.1087 -3.6613 -0.0961 15 6 1.3614 -4.9213 -0.0884 16 6 0.6279 -5.1124 1.2407 17 6 2.2949 -6.1244 -0.3864 18 6 2.3805 -6.1246 -1.9273 19 7 1.2014 -5.4044 -2.4300 20 6 0.9148 -5.1639 -3.7473 21 1 0.0166 -4.6273 -4.0152 22 6 1.7786 -5.6096 -4.7382 23 7 2.8736 -6.2631 -4.4116 24 14 1.3873 -5.2821 -6.5351 25 1 2.4587 -5.8568 -7.3878 26 1 0.0881 -5.9125 -6.8816 27 1 1.3035 -3.8174 -6.7645 28 6 0.3757 -4.9895 -1.2814 29 1 -0.3634 -0.1179 1.0208 30 1 -0.3633 0.9431 -0.4082 31 1 -0.3633 -0.8250 -0.6126 32 1 1.6676 2.1257 -0.0004 33 1 3.8803 3.2767 -0.0141 34 1 6.3128 3.1347 -0.0232 35 1 7.4461 0.9537 -0.0213 36 1 6.1705 -1.1182 -0.0088 37 1 3.0749 -3.6709 -0.1815 38 1 0.1157 -6.0746 1.2380 39 1 1.3469 -5.0858 2.0596 40 1 -0.1014 -4.3129 1.3714 41 1 3.2784 -5.9683 0.0568 42 1 1.8537 -7.0534 -0.0254 43 1 2.3763 -7.1487 -2.3006 44 1 3.2898 -5.6153 -2.2463 45 1 3.4774 -6.5743 -5.1040 46 1 -0.0656 -4.0100 -1.4654 47 1 -0.4045 -5.7262 -1.0893 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001046496063.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:12:52 Heat of formation + Delta-G solvation = 31.625550 kcal Electronic energy + Delta-G solvation = -29720.641842 eV Core-core repulsion = 25868.245457 eV Total energy + Delta-G solvation = -3852.396385 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.19886 -41.01532 -39.12588 -37.81701 -35.88908 -35.10468 -33.62161 -32.62745 -31.93762 -30.97670 -30.30848 -28.02704 -27.53067 -26.42645 -25.36786 -23.60808 -23.02391 -22.72147 -21.99836 -20.48328 -19.49395 -18.84526 -18.71894 -17.67921 -17.07495 -16.66946 -16.52228 -16.41422 -15.70482 -15.65347 -15.42258 -15.30129 -15.02822 -14.79909 -14.31297 -14.15301 -13.95473 -13.93171 -13.85702 -13.55024 -13.42016 -13.31607 -13.01418 -12.81240 -12.76525 -12.59250 -12.57250 -12.47840 -12.12122 -12.06090 -11.98544 -11.70739 -11.54650 -11.37814 -10.97423 -10.72226 -10.34969 -10.04286 -9.68193 -9.21226 -8.87706 -7.86810 -5.20778 -0.83649 -0.34239 0.92575 1.40460 1.42410 1.43980 1.50272 2.05271 2.26946 2.46658 2.98599 3.07475 3.31197 3.50491 3.58199 3.66717 3.71937 3.73467 3.89211 4.03324 4.10588 4.16883 4.21888 4.36723 4.40482 4.61316 4.61944 4.67991 4.75239 4.77473 4.86118 4.87218 4.91643 4.94123 5.02767 5.05595 5.06399 5.10224 5.32654 5.34672 5.38318 5.40578 5.46799 5.55066 5.63112 5.68746 5.75659 5.87598 6.18327 6.43725 6.71690 7.09658 7.18875 7.76154 8.40765 9.23053 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010337 B = 0.003698 C = 0.003304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2708.112110 B = 7570.086482 C = 8471.989369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.106 4.106 3 C -0.061 4.061 4 C -0.097 4.097 5 C -0.103 4.103 6 C -0.102 4.102 7 C -0.095 4.095 8 C -0.110 4.110 9 C 0.089 3.911 10 N -0.461 5.461 11 C 0.092 3.908 12 C 0.564 3.436 13 O -0.541 6.541 14 N -0.682 5.682 15 C 0.163 3.837 16 C -0.138 4.138 17 C -0.129 4.129 18 C 0.187 3.813 19 N -0.621 5.621 20 C -0.244 4.244 21 H 0.070 0.930 22 C -0.060 4.060 23 N -0.946 5.946 24 Si 0.974 3.026 25 H -0.289 1.289 26 H -0.276 1.276 27 H -0.283 1.283 28 C 0.130 3.870 29 H 0.078 0.922 30 H 0.084 0.916 31 H 0.070 0.930 32 H 0.182 0.818 33 H 0.165 0.835 34 H 0.166 0.834 35 H 0.160 0.840 36 H 0.135 0.865 37 H 0.407 0.593 38 H 0.080 0.920 39 H 0.072 0.928 40 H 0.060 0.940 41 H 0.090 0.910 42 H 0.097 0.903 43 H 0.011 0.989 44 H 0.011 0.989 45 H 0.247 0.753 46 H 0.035 0.965 47 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.184 18.088 14.808 23.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.109 4.109 3 C -0.086 4.086 4 C -0.099 4.099 5 C -0.122 4.122 6 C -0.120 4.120 7 C -0.115 4.115 8 C -0.129 4.129 9 C -0.035 4.035 10 N -0.172 5.172 11 C -0.060 4.060 12 C 0.350 3.650 13 O -0.419 6.419 14 N -0.332 5.332 15 C 0.076 3.924 16 C -0.196 4.196 17 C -0.168 4.168 18 C 0.062 3.938 19 N -0.347 5.347 20 C -0.373 4.373 21 H 0.088 0.912 22 C -0.253 4.253 23 N -0.595 5.595 24 Si 0.802 3.198 25 H -0.214 1.214 26 H -0.202 1.202 27 H -0.210 1.210 28 C 0.004 3.996 29 H 0.097 0.903 30 H 0.103 0.897 31 H 0.088 0.912 32 H 0.199 0.801 33 H 0.182 0.818 34 H 0.184 0.816 35 H 0.178 0.822 36 H 0.153 0.847 37 H 0.243 0.757 38 H 0.099 0.901 39 H 0.091 0.909 40 H 0.079 0.921 41 H 0.109 0.891 42 H 0.115 0.885 43 H 0.029 0.971 44 H 0.029 0.971 45 H 0.056 0.944 46 H 0.053 0.947 47 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges 4.916 17.206 14.684 23.147 hybrid contribution -0.048 0.230 -1.493 1.512 sum 4.868 17.435 13.190 22.398 Atomic orbital electron populations 1.20946 0.88273 1.03509 1.03539 1.20715 0.99123 0.92186 0.98857 1.21750 0.92395 0.98958 0.95516 1.19298 0.94861 0.94976 1.00746 1.21383 0.94570 0.97183 0.99033 1.21473 0.94700 0.99024 0.96809 1.21341 1.01978 0.91443 0.96738 1.21073 0.90466 1.00819 1.00539 1.19325 0.95227 0.88182 1.00722 1.67736 1.06665 1.32217 1.10631 1.21270 0.89994 0.94141 1.00641 1.18128 0.86730 0.83435 0.76708 1.90658 1.13465 1.86849 1.50975 1.45736 1.11147 1.04805 1.71483 1.21493 0.92468 0.82966 0.95459 1.21909 1.00556 1.03022 0.94105 1.23107 1.00039 0.97369 0.96252 1.20902 0.88970 0.94377 0.89520 1.44682 1.23733 1.65161 1.01156 1.19315 1.05249 1.30222 0.82483 0.91178 1.25551 0.97112 1.00841 1.01845 1.70157 1.13665 1.43699 1.32014 0.85223 0.77156 0.77550 0.79842 1.21445 1.20199 1.20951 1.21997 0.93208 0.97299 0.87139 0.90329 0.89682 0.91152 0.80057 0.81793 0.81633 0.82196 0.84734 0.75666 0.90077 0.90946 0.92068 0.89147 0.88465 0.97115 0.97077 0.94369 0.94697 0.95126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.75 8.67 71.23 0.62 -2.13 16 2 C -0.11 -3.01 5.89 -19.77 -0.12 -3.12 16 3 C -0.06 -1.32 9.50 22.48 0.21 -1.11 16 4 C -0.10 -2.21 5.75 -21.22 -0.12 -2.33 16 5 C -0.10 -1.52 9.77 22.31 0.22 -1.30 16 6 C -0.10 -1.25 9.95 22.07 0.22 -1.03 16 7 C -0.10 -1.44 9.94 22.04 0.22 -1.22 16 8 C -0.11 -2.51 9.99 22.38 0.22 -2.29 16 9 C 0.09 2.53 6.61 40.49 0.27 2.80 16 10 N -0.46 -15.47 9.48 -177.77 -1.69 -17.15 16 11 C 0.09 3.16 6.75 42.29 0.29 3.45 16 12 C 0.56 21.36 7.14 86.91 0.62 21.98 16 13 O -0.54 -21.41 10.03 -3.73 -0.04 -21.45 16 14 N -0.68 -25.49 5.16 -419.07 -2.16 -27.66 16 15 C 0.16 6.01 0.82 5.00 0.00 6.02 16 16 C -0.14 -4.09 8.59 71.98 0.62 -3.48 16 17 C -0.13 -4.73 5.99 31.79 0.19 -4.54 16 18 C 0.19 9.48 5.37 86.73 0.47 9.94 16 19 N -0.62 -33.94 3.39 -691.97 -2.35 -36.29 16 20 C -0.24 -14.62 10.28 84.03 0.86 -13.76 16 21 H 0.07 4.15 7.83 -2.91 -0.02 4.12 16 22 C -0.06 -3.59 5.49 84.86 0.47 -3.12 16 23 N -0.95 -58.43 10.31 21.65 0.22 -58.21 16 24 Si 0.97 47.99 29.55 68.60 2.03 50.02 16 25 H -0.29 -14.03 7.11 99.48 0.71 -13.32 16 26 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 27 H -0.28 -13.68 7.11 99.48 0.71 -12.97 16 28 C 0.13 5.96 6.10 86.85 0.53 6.49 16 29 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 30 H 0.08 1.64 8.04 -2.39 -0.02 1.62 16 31 H 0.07 2.32 5.81 -2.39 -0.01 2.31 16 32 H 0.18 2.34 8.06 -2.91 -0.02 2.32 16 33 H 0.16 1.26 8.06 -2.91 -0.02 1.24 16 34 H 0.17 0.79 8.06 -2.91 -0.02 0.77 16 35 H 0.16 1.41 8.06 -2.91 -0.02 1.39 16 36 H 0.13 2.98 8.06 -2.91 -0.02 2.95 16 37 H 0.41 15.01 7.81 -92.71 -0.72 14.29 16 38 H 0.08 2.14 8.11 -2.39 -0.02 2.12 16 39 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 40 H 0.06 1.98 6.53 -2.39 -0.02 1.96 16 41 H 0.09 2.86 8.05 -2.38 -0.02 2.85 16 42 H 0.10 3.13 8.01 -2.39 -0.02 3.11 16 43 H 0.01 0.60 7.52 -2.39 -0.02 0.58 16 44 H 0.01 0.63 7.37 -2.39 -0.02 0.61 16 45 H 0.25 14.83 8.31 -92.71 -0.77 14.05 16 46 H 0.03 1.74 6.31 -2.39 -0.02 1.72 16 47 H 0.03 1.38 8.04 -2.38 -0.02 1.36 16 Total: -1.00 -77.12 376.15 2.07 -75.05 By element: Atomic # 1 Polarization: 24.18 SS G_CDS: 0.27 Total: 24.45 kcal Atomic # 6 Polarization: 5.46 SS G_CDS: 5.78 Total: 11.24 kcal Atomic # 7 Polarization: -133.33 SS G_CDS: -5.97 Total: -139.30 kcal Atomic # 8 Polarization: -21.41 SS G_CDS: -0.04 Total: -21.45 kcal Atomic # 14 Polarization: 47.99 SS G_CDS: 2.03 Total: 50.02 kcal Total: -77.12 2.07 -75.05 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046496063.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.672 kcal (2) G-P(sol) polarization free energy of solvation -77.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.046 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds