Wall clock time and date at job start Tue Mar 31 2020 22:33:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.36348 * 119.95941 * 2 1 4 4 C 1.38872 * 121.05432 * 179.69189 * 3 2 1 5 5 C 1.38744 * 120.72825 * 0.33087 * 4 3 2 6 6 C 1.47441 * 120.33105 * 179.97438 * 5 4 3 7 7 O 1.21600 * 119.99802 * 180.02562 * 6 5 4 8 8 N 1.34768 * 119.99955 * 0.02562 * 6 5 4 9 9 C 1.46499 * 120.00118 * 180.02562 * 8 6 5 10 10 C 1.53001 * 110.88897 * 62.42368 * 9 8 6 11 11 C 1.55153 * 111.00754 * 186.34913 * 9 8 6 12 12 C 1.54326 * 102.94023 * 82.57047 * 11 9 8 13 13 N 1.47017 * 107.27282 * 22.19554 * 12 11 9 14 14 C 1.36941 * 125.65411 * 181.02242 * 13 12 11 15 15 H 1.07994 * 120.00264 * 173.97670 * 14 13 12 16 16 C 1.38813 * 119.99162 * 353.98082 * 14 13 12 17 17 N 1.31617 * 120.00714 * 6.84441 * 16 14 13 18 18 Si 1.86800 * 119.99608 * 186.84508 * 16 14 13 19 19 H 1.48504 * 109.47368 * 94.98714 * 18 16 14 20 20 H 1.48505 * 109.47420 * 214.98625 * 18 16 14 21 21 H 1.48504 * 109.47180 * 334.98595 * 18 16 14 22 22 C 1.47430 * 108.70314 * 1.05744 * 13 12 11 23 23 C 1.41780 * 119.33682 * 359.97176 * 5 4 3 24 24 N 1.33345 * 121.05565 * 180.02562 * 23 5 4 25 25 C 1.31237 * 121.35157 * 180.02562 * 24 23 5 26 26 C 1.39234 * 121.69398 * 359.95259 * 25 24 23 27 27 C 1.36631 * 119.91181 * 0.02765 * 26 25 24 28 28 C 1.40441 * 119.95781 * 180.30018 * 2 1 3 29 29 H 1.08996 * 109.46694 * 269.70902 * 1 2 3 30 30 H 1.09002 * 109.46652 * 29.70291 * 1 2 3 31 31 H 1.09000 * 109.47021 * 149.70517 * 1 2 3 32 32 H 1.07998 * 119.47801 * 359.97438 * 3 2 1 33 33 H 1.08000 * 119.63364 * 180.30537 * 4 3 2 34 34 H 0.96998 * 120.00333 * 359.97438 * 8 6 5 35 35 H 1.09006 * 109.46923 * 60.70102 * 10 9 8 36 36 H 1.08996 * 109.47494 * 180.70575 * 10 9 8 37 37 H 1.09008 * 109.47254 * 300.71156 * 10 9 8 38 38 H 1.09002 * 110.71858 * 200.92886 * 11 9 8 39 39 H 1.08996 * 110.72400 * 324.21066 * 11 9 8 40 40 H 1.08991 * 109.88239 * 262.77643 * 12 11 9 41 41 H 1.09001 * 110.00768 * 141.68016 * 12 11 9 42 42 H 0.96994 * 120.00631 * 180.02562 * 17 16 14 43 43 H 1.08998 * 110.36770 * 217.03339 * 22 13 12 44 44 H 1.09001 * 110.46210 * 94.75936 * 22 13 12 45 45 H 1.07998 * 119.15069 * 179.97438 * 25 24 23 46 46 H 1.08003 * 120.04350 * 179.97438 * 26 25 24 47 47 H 1.07992 * 120.92386 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1879 1.1813 0.0000 4 6 3.5764 1.2078 0.0064 5 6 4.3080 0.0290 0.0061 6 6 5.7819 0.0674 0.0123 7 8 6.4171 -0.9695 0.0116 8 7 6.4251 1.2517 0.0189 9 6 7.8896 1.2899 0.0246 10 6 8.4569 0.6470 -1.2426 11 6 8.4074 2.7428 0.1918 12 6 8.3381 2.9609 1.7180 13 7 8.3557 1.6335 2.3499 14 6 8.2889 1.3892 3.6956 15 1 8.2109 0.3745 4.0570 16 6 8.3216 2.4459 4.5952 17 7 8.2806 3.6859 4.1558 18 14 8.4236 2.1079 6.4295 19 1 9.8429 2.1579 6.8639 20 1 7.6441 3.1350 7.1663 21 1 7.8652 0.7622 6.7168 22 6 8.4578 0.6090 1.2947 23 6 3.6241 -1.2130 -0.0003 24 7 4.2930 -2.3666 -0.0002 25 6 3.6659 -3.5194 -0.0066 26 6 2.2757 -3.5959 -0.0127 27 6 1.5303 -2.4508 -0.0126 28 6 2.2083 -1.2168 -0.0064 29 1 -0.3632 -0.0052 1.0276 30 1 -0.3633 0.8927 -0.5092 31 1 -0.3633 -0.8873 -0.5184 32 1 1.6388 2.1112 -0.0004 33 1 4.0923 2.1566 0.0113 34 1 5.9184 2.0788 0.0192 35 1 8.1055 1.1953 -2.1168 36 1 9.5460 0.6766 -1.2088 37 1 8.1233 -0.3888 -1.3053 38 1 9.4341 2.8296 -0.1639 39 1 7.7571 3.4463 -0.3281 40 1 7.4166 3.4823 1.9765 41 1 9.1984 3.5414 2.0512 42 1 8.3038 4.4242 4.7844 43 1 7.8613 -0.2652 1.5557 44 1 9.4985 0.3245 1.1392 45 1 4.2431 -4.4322 -0.0068 46 1 1.7872 -4.5591 -0.0182 47 1 0.4511 -2.4911 -0.0177 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001046498316.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:33:49 Heat of formation + Delta-G solvation = 56.635974 kcal Electronic energy + Delta-G solvation = -29738.896575 eV Core-core repulsion = 25887.584724 eV Total energy + Delta-G solvation = -3851.311851 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.10427 -39.49749 -37.42855 -36.98131 -34.13506 -33.82983 -31.99281 -31.09289 -30.63776 -29.86928 -28.61668 -27.43371 -25.57514 -24.40955 -23.81818 -23.50782 -22.39682 -20.41216 -19.96952 -19.01002 -18.13219 -17.71556 -17.11868 -16.65622 -15.63470 -15.38993 -14.91942 -14.72378 -14.55258 -14.20412 -14.13677 -14.03460 -13.63168 -13.53276 -13.41299 -13.16407 -12.96619 -12.68722 -12.40399 -12.04177 -11.97524 -11.82111 -11.74016 -11.56447 -11.40413 -11.37714 -10.86379 -10.80969 -10.46888 -10.30345 -10.27080 -10.01181 -9.92794 -9.58500 -9.54675 -8.90564 -8.87024 -8.52535 -8.42437 -8.18632 -6.71006 -5.65432 -2.95264 0.08763 0.73096 1.70441 2.68040 3.44931 3.47959 3.50509 3.52525 3.58539 4.17969 4.23880 4.37563 4.52653 4.57489 4.63578 4.67738 4.87856 4.93106 5.08868 5.15209 5.22406 5.27002 5.37435 5.48578 5.50242 5.53313 5.66322 5.70508 5.79622 5.81278 5.84068 5.92347 6.07990 6.10596 6.20940 6.24118 6.26039 6.37890 6.44985 6.48051 6.64981 6.69386 6.79482 6.96112 7.28279 7.59127 7.66220 7.87278 7.96775 8.09109 8.33617 8.80281 9.30824 9.91169 10.58180 11.47235 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.011433 B = 0.003538 C = 0.003292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2448.463313 B = 7912.294769 C = 8503.014507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.047 4.047 3 C -0.126 4.126 4 C -0.059 4.059 5 C -0.104 4.104 6 C 0.556 3.444 7 O -0.498 6.498 8 N -0.702 5.702 9 C 0.159 3.841 10 C -0.149 4.149 11 C -0.146 4.146 12 C 0.177 3.823 13 N -0.603 5.603 14 C -0.219 4.219 15 H 0.076 0.924 16 C -0.009 4.009 17 N -0.924 5.924 18 Si 0.907 3.093 19 H -0.289 1.289 20 H -0.292 1.292 21 H -0.282 1.282 22 C 0.131 3.869 23 C 0.166 3.834 24 N -0.431 5.431 25 C 0.128 3.872 26 C -0.177 4.177 27 C -0.063 4.063 28 C -0.109 4.109 29 H 0.077 0.923 30 H 0.073 0.927 31 H 0.070 0.930 32 H 0.133 0.867 33 H 0.136 0.864 34 H 0.393 0.607 35 H 0.048 0.952 36 H 0.062 0.938 37 H 0.072 0.928 38 H 0.073 0.927 39 H 0.062 0.938 40 H 0.040 0.960 41 H 0.046 0.954 42 H 0.250 0.750 43 H 0.057 0.943 44 H 0.025 0.975 45 H 0.159 0.841 46 H 0.136 0.864 47 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.303 -6.866 -13.759 22.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.048 4.048 3 C -0.144 4.144 4 C -0.080 4.080 5 C -0.108 4.108 6 C 0.341 3.659 7 O -0.373 6.373 8 N -0.354 5.354 9 C 0.073 3.927 10 C -0.207 4.207 11 C -0.185 4.185 12 C 0.053 3.947 13 N -0.329 5.329 14 C -0.347 4.347 15 H 0.094 0.906 16 C -0.205 4.205 17 N -0.572 5.572 18 Si 0.738 3.262 19 H -0.217 1.217 20 H -0.219 1.219 21 H -0.207 1.207 22 C 0.004 3.996 23 C 0.043 3.957 24 N -0.138 5.138 25 C -0.045 4.045 26 C -0.197 4.197 27 C -0.089 4.089 28 C -0.111 4.111 29 H 0.096 0.904 30 H 0.092 0.908 31 H 0.088 0.912 32 H 0.151 0.849 33 H 0.153 0.847 34 H 0.227 0.773 35 H 0.067 0.933 36 H 0.081 0.919 37 H 0.091 0.909 38 H 0.091 0.909 39 H 0.081 0.919 40 H 0.058 0.942 41 H 0.064 0.936 42 H 0.060 0.940 43 H 0.075 0.925 44 H 0.042 0.958 45 H 0.176 0.824 46 H 0.154 0.846 47 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -14.873 -7.363 -13.543 21.421 hybrid contribution -1.153 0.383 1.167 1.685 sum -16.027 -6.980 -12.376 21.418 Atomic orbital electron populations 1.20900 0.90546 1.03242 1.02942 1.19835 0.96167 0.91997 0.96775 1.20705 0.93863 0.97982 1.01822 1.21464 0.94195 0.97585 0.94757 1.20053 0.94261 0.91822 1.04671 1.17751 0.86220 0.84168 0.77747 1.90790 1.67026 1.32276 1.47216 1.45733 1.06941 1.07648 1.75111 1.21447 0.78648 0.96894 0.95746 1.21986 1.00594 1.02182 0.95963 1.23217 1.00486 0.93840 1.00938 1.21146 1.00950 0.87800 0.84841 1.44438 1.86544 1.00542 1.01348 1.19081 1.42430 0.92951 0.80244 0.90648 1.24755 1.02614 0.95275 0.97843 1.69957 1.57516 0.97293 1.32427 0.86154 0.77553 0.77073 0.85415 1.21679 1.21890 1.20731 1.21890 0.97118 0.93291 0.87255 1.18602 0.88774 0.92021 0.96344 1.68355 1.38728 0.97173 1.09507 1.23183 0.91816 0.96493 0.93004 1.21944 0.95741 0.99446 1.02588 1.21452 1.00298 0.91310 0.95819 1.18666 0.93811 0.94312 1.04304 0.90416 0.90798 0.91152 0.84900 0.84657 0.77258 0.93264 0.91924 0.90940 0.90872 0.91885 0.94158 0.93574 0.93968 0.92520 0.95766 0.82417 0.84639 0.84358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.80 9.54 36.01 0.34 -0.45 16 2 C -0.05 -0.49 5.89 -104.47 -0.62 -1.10 16 3 C -0.13 -1.33 9.56 -40.03 -0.38 -1.72 16 4 C -0.06 -0.76 9.52 -39.16 -0.37 -1.14 16 5 C -0.10 -1.71 5.91 -104.61 -0.62 -2.33 16 6 C 0.56 10.52 7.15 -12.52 -0.09 10.43 16 7 O -0.50 -10.85 11.96 5.28 0.06 -10.79 16 8 N -0.70 -12.35 5.12 -46.68 -0.24 -12.59 16 9 C 0.16 2.97 0.82 -129.67 -0.11 2.87 16 10 C -0.15 -2.42 8.62 37.16 0.32 -2.10 16 11 C -0.15 -2.67 5.99 -24.90 -0.15 -2.82 16 12 C 0.18 4.29 5.37 -3.07 -0.02 4.27 16 13 N -0.60 -16.00 3.39 -170.07 -0.58 -16.57 16 14 C -0.22 -6.40 10.26 -15.06 -0.15 -6.55 16 15 H 0.08 2.21 7.84 -52.49 -0.41 1.80 16 16 C -0.01 -0.27 5.48 -17.43 -0.10 -0.36 16 17 N -0.92 -27.41 10.36 55.49 0.57 -26.83 16 18 Si 0.91 22.92 29.56 -169.99 -5.02 17.90 16 19 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 20 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 21 H -0.28 -7.03 7.11 56.52 0.40 -6.62 16 22 C 0.13 3.04 6.11 -2.53 -0.02 3.02 16 23 C 0.17 2.68 6.61 -84.58 -0.56 2.12 16 24 N -0.43 -7.32 8.44 -10.76 -0.09 -7.41 16 25 C 0.13 1.60 11.15 -17.44 -0.19 1.41 16 26 C -0.18 -1.71 10.03 -39.79 -0.40 -2.10 16 27 C -0.06 -0.62 9.36 -39.19 -0.37 -0.99 16 28 C -0.11 -1.38 5.74 -106.82 -0.61 -1.99 16 29 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 30 H 0.07 0.39 8.08 -51.93 -0.42 -0.03 16 31 H 0.07 0.38 6.41 -51.93 -0.33 0.05 16 32 H 0.13 1.02 8.06 -52.49 -0.42 0.59 16 33 H 0.14 1.48 6.37 -52.49 -0.33 1.15 16 34 H 0.39 6.00 6.51 -40.82 -0.27 5.74 16 35 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.06 0.95 8.13 -51.93 -0.42 0.53 16 37 H 0.07 1.30 6.45 -51.92 -0.34 0.97 16 38 H 0.07 1.25 8.04 -51.93 -0.42 0.83 16 39 H 0.06 0.98 8.05 -51.93 -0.42 0.57 16 40 H 0.04 1.05 7.54 -51.93 -0.39 0.66 16 41 H 0.05 1.24 7.36 -51.93 -0.38 0.86 16 42 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 43 H 0.06 1.44 6.31 -51.93 -0.33 1.11 16 44 H 0.02 0.57 8.03 -51.93 -0.42 0.15 16 45 H 0.16 1.55 8.06 -52.49 -0.42 1.13 16 46 H 0.14 0.83 8.06 -52.48 -0.42 0.40 16 47 H 0.14 0.90 6.41 -52.49 -0.34 0.56 16 LS Contribution 373.56 15.07 5.63 5.63 Total: -1.00 -36.23 373.56 -10.21 -46.44 By element: Atomic # 1 Polarization: 10.23 SS G_CDS: -6.46 Total: 3.77 kcal Atomic # 6 Polarization: 4.54 SS G_CDS: -4.08 Total: 0.46 kcal Atomic # 7 Polarization: -63.08 SS G_CDS: -0.33 Total: -63.41 kcal Atomic # 8 Polarization: -10.85 SS G_CDS: 0.06 Total: -10.79 kcal Atomic # 14 Polarization: 22.92 SS G_CDS: -5.02 Total: 17.90 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -36.23 -10.21 -46.44 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046498316.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.078 kcal (2) G-P(sol) polarization free energy of solvation -36.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.442 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds