Wall clock time and date at job start Tue Mar 31 2020 22:33:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.36348 * 119.95941 * 2 1 4 4 C 1.38872 * 121.05432 * 179.69189 * 3 2 1 5 5 C 1.38744 * 120.72825 * 0.33087 * 4 3 2 6 6 C 1.47441 * 120.33105 * 179.97438 * 5 4 3 7 7 O 1.21600 * 119.99802 * 180.02562 * 6 5 4 8 8 N 1.34768 * 119.99955 * 0.02562 * 6 5 4 9 9 C 1.46499 * 120.00118 * 180.02562 * 8 6 5 10 10 C 1.53001 * 110.88897 * 62.42368 * 9 8 6 11 11 C 1.55153 * 111.00754 * 186.34913 * 9 8 6 12 12 C 1.54326 * 102.94023 * 82.57047 * 11 9 8 13 13 N 1.47017 * 107.27282 * 22.19554 * 12 11 9 14 14 C 1.36941 * 125.65411 * 181.02242 * 13 12 11 15 15 H 1.07994 * 120.00264 * 173.97670 * 14 13 12 16 16 C 1.38813 * 119.99162 * 353.98082 * 14 13 12 17 17 N 1.31617 * 120.00714 * 6.84441 * 16 14 13 18 18 Si 1.86800 * 119.99608 * 186.84508 * 16 14 13 19 19 H 1.48504 * 109.47368 * 94.98714 * 18 16 14 20 20 H 1.48505 * 109.47420 * 214.98625 * 18 16 14 21 21 H 1.48504 * 109.47180 * 334.98595 * 18 16 14 22 22 C 1.47430 * 108.70314 * 1.05744 * 13 12 11 23 23 C 1.41780 * 119.33682 * 359.97176 * 5 4 3 24 24 N 1.33345 * 121.05565 * 180.02562 * 23 5 4 25 25 C 1.31237 * 121.35157 * 180.02562 * 24 23 5 26 26 C 1.39234 * 121.69398 * 359.95259 * 25 24 23 27 27 C 1.36631 * 119.91181 * 0.02765 * 26 25 24 28 28 C 1.40441 * 119.95781 * 180.30018 * 2 1 3 29 29 H 1.08996 * 109.46694 * 269.70902 * 1 2 3 30 30 H 1.09002 * 109.46652 * 29.70291 * 1 2 3 31 31 H 1.09000 * 109.47021 * 149.70517 * 1 2 3 32 32 H 1.07998 * 119.47801 * 359.97438 * 3 2 1 33 33 H 1.08000 * 119.63364 * 180.30537 * 4 3 2 34 34 H 0.96998 * 120.00333 * 359.97438 * 8 6 5 35 35 H 1.09006 * 109.46923 * 60.70102 * 10 9 8 36 36 H 1.08996 * 109.47494 * 180.70575 * 10 9 8 37 37 H 1.09008 * 109.47254 * 300.71156 * 10 9 8 38 38 H 1.09002 * 110.71858 * 200.92886 * 11 9 8 39 39 H 1.08996 * 110.72400 * 324.21066 * 11 9 8 40 40 H 1.08991 * 109.88239 * 262.77643 * 12 11 9 41 41 H 1.09001 * 110.00768 * 141.68016 * 12 11 9 42 42 H 0.96994 * 120.00631 * 180.02562 * 17 16 14 43 43 H 1.08998 * 110.36770 * 217.03339 * 22 13 12 44 44 H 1.09001 * 110.46210 * 94.75936 * 22 13 12 45 45 H 1.07998 * 119.15069 * 179.97438 * 25 24 23 46 46 H 1.08003 * 120.04350 * 179.97438 * 26 25 24 47 47 H 1.07992 * 120.92386 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1879 1.1813 0.0000 4 6 3.5764 1.2078 0.0064 5 6 4.3080 0.0290 0.0061 6 6 5.7819 0.0674 0.0123 7 8 6.4171 -0.9695 0.0116 8 7 6.4251 1.2517 0.0189 9 6 7.8896 1.2899 0.0246 10 6 8.4569 0.6470 -1.2426 11 6 8.4074 2.7428 0.1918 12 6 8.3381 2.9609 1.7180 13 7 8.3557 1.6335 2.3499 14 6 8.2889 1.3892 3.6956 15 1 8.2109 0.3745 4.0570 16 6 8.3216 2.4459 4.5952 17 7 8.2806 3.6859 4.1558 18 14 8.4236 2.1079 6.4295 19 1 9.8429 2.1579 6.8639 20 1 7.6441 3.1350 7.1663 21 1 7.8652 0.7622 6.7168 22 6 8.4578 0.6090 1.2947 23 6 3.6241 -1.2130 -0.0003 24 7 4.2930 -2.3666 -0.0002 25 6 3.6659 -3.5194 -0.0066 26 6 2.2757 -3.5959 -0.0127 27 6 1.5303 -2.4508 -0.0126 28 6 2.2083 -1.2168 -0.0064 29 1 -0.3632 -0.0052 1.0276 30 1 -0.3633 0.8927 -0.5092 31 1 -0.3633 -0.8873 -0.5184 32 1 1.6388 2.1112 -0.0004 33 1 4.0923 2.1566 0.0113 34 1 5.9184 2.0788 0.0192 35 1 8.1055 1.1953 -2.1168 36 1 9.5460 0.6766 -1.2088 37 1 8.1233 -0.3888 -1.3053 38 1 9.4341 2.8296 -0.1639 39 1 7.7571 3.4463 -0.3281 40 1 7.4166 3.4823 1.9765 41 1 9.1984 3.5414 2.0512 42 1 8.3038 4.4242 4.7844 43 1 7.8613 -0.2652 1.5557 44 1 9.4985 0.3245 1.1392 45 1 4.2431 -4.4322 -0.0068 46 1 1.7872 -4.5591 -0.0182 47 1 0.4511 -2.4911 -0.0177 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001046498316.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:33:48 Heat of formation + Delta-G solvation = 32.646272 kcal Electronic energy + Delta-G solvation = -29739.936847 eV Core-core repulsion = 25887.584724 eV Total energy + Delta-G solvation = -3852.352123 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.07712 -40.91894 -38.78595 -38.15029 -35.65158 -35.09630 -33.65052 -32.25011 -31.61080 -31.36598 -30.35540 -28.27228 -27.53149 -25.49626 -25.26009 -24.56733 -23.59371 -22.17194 -21.31294 -20.40987 -19.21288 -19.04162 -18.48511 -17.97524 -17.02245 -16.72241 -16.61834 -16.13830 -15.66978 -15.64109 -15.35656 -15.20480 -14.97320 -14.76339 -14.28436 -14.14463 -14.08268 -13.96038 -13.88331 -13.53265 -13.41874 -13.10599 -13.03038 -12.88451 -12.76264 -12.74901 -12.32235 -12.17854 -12.13478 -12.05398 -11.97879 -11.71105 -11.54931 -11.33938 -10.79120 -10.70909 -10.05069 -9.93535 -9.80917 -9.13950 -8.86161 -7.89207 -5.21493 -0.82656 -0.16498 0.77822 1.40189 1.42274 1.51160 1.76195 2.18944 2.35143 2.45991 3.16427 3.28291 3.35446 3.48965 3.61325 3.70332 3.73455 3.85663 3.94678 3.96863 4.05304 4.08956 4.18984 4.41135 4.43610 4.55643 4.63275 4.68884 4.75806 4.80225 4.83494 4.85379 4.91647 4.92647 4.99708 5.03085 5.08142 5.10477 5.18058 5.20615 5.35776 5.40088 5.43358 5.58645 5.64607 5.71583 5.78328 5.86033 6.18424 6.69022 7.09504 7.10110 7.43424 7.75310 8.40814 9.21164 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.011433 B = 0.003538 C = 0.003292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2448.463313 B = 7912.294769 C = 8503.014507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.030 4.030 3 C -0.139 4.139 4 C -0.047 4.047 5 C -0.158 4.158 6 C 0.550 3.450 7 O -0.540 6.540 8 N -0.700 5.700 9 C 0.169 3.831 10 C -0.138 4.138 11 C -0.127 4.127 12 C 0.186 3.814 13 N -0.620 5.620 14 C -0.245 4.245 15 H 0.061 0.939 16 C -0.054 4.054 17 N -0.941 5.941 18 Si 0.972 3.028 19 H -0.284 1.284 20 H -0.286 1.286 21 H -0.279 1.279 22 C 0.130 3.870 23 C 0.137 3.863 24 N -0.496 5.496 25 C 0.117 3.883 26 C -0.174 4.174 27 C -0.053 4.053 28 C -0.130 4.130 29 H 0.090 0.910 30 H 0.093 0.907 31 H 0.088 0.912 32 H 0.168 0.832 33 H 0.148 0.852 34 H 0.403 0.597 35 H 0.077 0.923 36 H 0.075 0.925 37 H 0.050 0.950 38 H 0.093 0.907 39 H 0.099 0.901 40 H 0.014 0.986 41 H 0.014 0.986 42 H 0.249 0.751 43 H 0.024 0.976 44 H 0.023 0.977 45 H 0.172 0.828 46 H 0.178 0.822 47 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.591 -6.485 -14.753 25.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.031 4.031 3 C -0.157 4.157 4 C -0.067 4.067 5 C -0.162 4.162 6 C 0.338 3.662 7 O -0.418 6.418 8 N -0.352 5.352 9 C 0.082 3.918 10 C -0.196 4.196 11 C -0.165 4.165 12 C 0.061 3.939 13 N -0.346 5.346 14 C -0.374 4.374 15 H 0.079 0.921 16 C -0.248 4.248 17 N -0.590 5.590 18 Si 0.800 3.200 19 H -0.211 1.211 20 H -0.212 1.212 21 H -0.204 1.204 22 C 0.004 3.996 23 C 0.014 3.986 24 N -0.204 5.204 25 C -0.055 4.055 26 C -0.193 4.193 27 C -0.079 4.079 28 C -0.132 4.132 29 H 0.108 0.892 30 H 0.112 0.888 31 H 0.107 0.893 32 H 0.186 0.814 33 H 0.165 0.835 34 H 0.240 0.760 35 H 0.095 0.905 36 H 0.094 0.906 37 H 0.069 0.931 38 H 0.111 0.889 39 H 0.118 0.882 40 H 0.033 0.967 41 H 0.032 0.968 42 H 0.058 0.942 43 H 0.042 0.958 44 H 0.040 0.960 45 H 0.189 0.811 46 H 0.195 0.805 47 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -18.176 -6.971 -14.561 24.310 hybrid contribution -0.237 0.175 1.505 1.533 sum -18.413 -6.796 -13.056 23.573 Atomic orbital electron populations 1.21045 0.87121 1.05200 1.04175 1.20386 0.98422 0.90971 0.93287 1.21101 0.92863 0.99761 1.01931 1.21729 0.95536 0.96817 0.92656 1.20003 0.92769 0.93695 1.09687 1.18287 0.87648 0.83695 0.76569 1.90744 1.68228 1.33581 1.49232 1.45690 1.06513 1.08051 1.74979 1.21325 0.79453 0.96561 0.94500 1.21892 1.01282 1.00967 0.95477 1.23100 1.02664 0.94137 0.96595 1.20955 0.98124 0.86144 0.88672 1.44676 1.86419 1.02291 1.01260 1.19272 1.43325 0.92656 0.82197 0.92070 1.25503 1.02294 0.95092 1.01909 1.70140 1.57581 0.97731 1.33531 0.85171 0.77587 0.76992 0.80246 1.21072 1.21232 1.20423 1.21951 0.96702 0.92106 0.88880 1.18895 0.90626 0.91686 0.97357 1.68265 1.40993 0.98691 1.12455 1.23666 0.93887 0.95921 0.91996 1.22307 0.94286 1.01472 1.01283 1.21974 1.02245 0.90029 0.93602 1.19013 0.92615 0.96641 1.04940 0.89197 0.88825 0.89347 0.81408 0.83465 0.76017 0.90454 0.90590 0.93094 0.88868 0.88221 0.96727 0.96810 0.94160 0.95762 0.95953 0.81102 0.80507 0.80118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.02 9.54 71.24 0.68 -0.34 16 2 C -0.03 -0.54 5.89 -19.77 -0.12 -0.65 16 3 C -0.14 -2.64 9.56 21.98 0.21 -2.43 16 4 C -0.05 -1.20 9.52 22.54 0.21 -0.99 16 5 C -0.16 -5.44 5.91 -19.86 -0.12 -5.56 16 6 C 0.55 22.21 7.15 86.67 0.62 22.83 16 7 O -0.54 -25.56 11.96 -4.03 -0.05 -25.61 16 8 N -0.70 -25.37 5.12 -419.87 -2.15 -27.52 16 9 C 0.17 6.38 0.82 5.00 0.00 6.39 16 10 C -0.14 -4.43 8.62 71.98 0.62 -3.81 16 11 C -0.13 -4.51 5.99 31.78 0.19 -4.32 16 12 C 0.19 9.22 5.37 86.73 0.47 9.69 16 13 N -0.62 -34.46 3.39 -691.99 -2.35 -36.80 16 14 C -0.25 -15.02 10.26 84.03 0.86 -14.16 16 15 H 0.06 3.80 7.84 -2.91 -0.02 3.78 16 16 C -0.05 -3.23 5.48 84.86 0.47 -2.77 16 17 N -0.94 -57.21 10.36 21.65 0.22 -56.98 16 18 Si 0.97 48.15 29.56 68.60 2.03 50.18 16 19 H -0.28 -13.77 7.11 99.48 0.71 -13.07 16 20 H -0.29 -13.83 7.11 99.48 0.71 -13.12 16 21 H -0.28 -13.57 7.11 99.48 0.71 -12.86 16 22 C 0.13 6.33 6.11 86.85 0.53 6.86 16 23 C 0.14 4.62 6.61 40.61 0.27 4.89 16 24 N -0.50 -18.00 8.44 -187.96 -1.59 -19.59 16 25 C 0.12 3.01 11.15 85.02 0.95 3.96 16 26 C -0.17 -2.99 10.03 22.13 0.22 -2.76 16 27 C -0.05 -0.89 9.36 22.52 0.21 -0.68 16 28 C -0.13 -3.13 5.74 -21.29 -0.12 -3.25 16 29 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16 30 H 0.09 0.50 8.08 -2.39 -0.02 0.48 16 31 H 0.09 0.47 6.41 -2.39 -0.02 0.46 16 32 H 0.17 1.93 8.06 -2.91 -0.02 1.91 16 33 H 0.15 3.17 6.37 -2.91 -0.02 3.15 16 34 H 0.40 12.44 6.51 -92.71 -0.60 11.83 16 35 H 0.08 2.06 8.14 -2.38 -0.02 2.04 16 36 H 0.08 2.22 8.13 -2.39 -0.02 2.20 16 37 H 0.05 1.89 6.45 -2.38 -0.02 1.87 16 38 H 0.09 3.00 8.04 -2.39 -0.02 2.98 16 39 H 0.10 2.86 8.05 -2.39 -0.02 2.84 16 40 H 0.01 0.78 7.54 -2.39 -0.02 0.77 16 41 H 0.01 0.76 7.36 -2.39 -0.02 0.74 16 42 H 0.25 14.60 8.31 -92.71 -0.77 13.83 16 43 H 0.02 1.33 6.31 -2.39 -0.02 1.31 16 44 H 0.02 1.10 8.03 -2.39 -0.02 1.08 16 45 H 0.17 3.52 8.06 -2.91 -0.02 3.50 16 46 H 0.18 1.47 8.06 -2.91 -0.02 1.44 16 47 H 0.18 1.39 6.41 -2.91 -0.02 1.37 16 Total: -1.00 -86.95 373.56 2.67 -84.28 By element: Atomic # 1 Polarization: 18.76 SS G_CDS: 0.40 Total: 19.16 kcal Atomic # 6 Polarization: 6.74 SS G_CDS: 6.16 Total: 12.89 kcal Atomic # 7 Polarization: -135.04 SS G_CDS: -5.86 Total: -140.90 kcal Atomic # 8 Polarization: -25.56 SS G_CDS: -0.05 Total: -25.61 kcal Atomic # 14 Polarization: 48.15 SS G_CDS: 2.03 Total: 50.18 kcal Total: -86.95 2.67 -84.28 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046498316.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.925 kcal (2) G-P(sol) polarization free energy of solvation -86.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.278 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds