Wall clock time and date at job start Tue Mar 31 2020 22:26:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.39318 * 119.11416 * 2 1 4 4 C 1.36584 * 119.90360 * 179.69722 * 3 2 1 5 5 C 1.40892 * 118.15700 * 0.27646 * 4 3 2 6 6 C 1.40180 * 121.21730 * 180.02562 * 5 4 3 7 7 C 1.38549 * 119.40115 * 179.97438 * 6 5 4 8 8 C 1.47768 * 119.80514 * 179.97438 * 7 6 5 9 9 O 1.21562 * 120.00127 * 0.02562 * 8 7 6 10 10 N 1.34778 * 120.00340 * 180.02562 * 8 7 6 11 11 C 1.46496 * 120.00452 * 180.02562 * 10 8 7 12 12 C 1.53001 * 110.88701 * 303.88247 * 11 10 8 13 13 C 1.55156 * 111.00745 * 179.97438 * 11 10 8 14 14 C 1.54320 * 102.94180 * 277.42949 * 13 11 10 15 15 N 1.47023 * 107.27341 * 337.80251 * 14 13 11 16 16 C 1.36934 * 125.64850 * 178.98470 * 15 14 13 17 17 H 1.08001 * 120.00042 * 174.79108 * 16 15 14 18 18 C 1.38816 * 120.00145 * 354.79480 * 16 15 14 19 19 N 1.31619 * 119.99861 * 7.05301 * 18 16 15 20 20 Si 1.86794 * 120.00159 * 187.05134 * 18 16 15 21 21 H 1.48499 * 109.47348 * 94.98488 * 20 18 16 22 22 H 1.48498 * 109.47482 * 214.98866 * 20 18 16 23 23 H 1.48506 * 109.46941 * 334.98452 * 20 18 16 24 24 C 1.47428 * 108.70050 * 358.94355 * 15 14 13 25 25 C 1.40635 * 120.39302 * 0.02562 * 7 6 5 26 26 C 1.35702 * 120.92010 * 359.97438 * 25 7 6 27 27 C 1.40764 * 120.11198 * 0.02562 * 26 25 7 28 28 N 1.31130 * 119.12051 * 180.24859 * 2 1 3 29 29 H 1.09001 * 109.47071 * 90.00767 * 1 2 3 30 30 H 1.09004 * 109.47207 * 210.00395 * 1 2 3 31 31 H 1.09002 * 109.47329 * 330.00285 * 1 2 3 32 32 H 1.07993 * 120.05016 * 359.96471 * 3 2 1 33 33 H 1.07998 * 120.92111 * 180.24641 * 4 3 2 34 34 H 1.07994 * 120.29975 * 359.97438 * 6 5 4 35 35 H 0.96998 * 119.99481 * 0.02562 * 10 8 7 36 36 H 1.09005 * 109.46907 * 59.29381 * 12 11 10 37 37 H 1.08995 * 109.47263 * 179.29678 * 12 11 10 38 38 H 1.08998 * 109.46891 * 299.29947 * 12 11 10 39 39 H 1.09004 * 110.71419 * 35.79021 * 13 11 10 40 40 H 1.08997 * 110.72167 * 158.88720 * 13 11 10 41 41 H 1.09002 * 109.88353 * 97.22561 * 14 13 11 42 42 H 1.09007 * 109.87866 * 218.38490 * 14 13 11 43 43 H 0.97002 * 120.00098 * 180.02562 * 19 18 16 44 44 H 1.08995 * 110.36730 * 265.28237 * 24 15 14 45 45 H 1.09000 * 110.36090 * 142.96308 * 24 15 14 46 46 H 1.07994 * 119.54233 * 180.02562 * 25 7 6 47 47 H 1.07999 * 119.94558 * 179.97438 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1848 1.2172 0.0000 4 6 3.5505 1.2360 0.0063 5 6 4.2324 0.0031 0.0066 6 6 5.6331 -0.0525 0.0134 7 6 6.2649 -1.2855 0.0140 8 6 7.7410 -1.3545 0.0205 9 8 8.3972 -0.3312 0.0258 10 7 8.3597 -2.5518 0.0206 11 6 9.8231 -2.6202 0.0277 12 6 10.4110 -1.8467 -1.1542 13 6 10.3111 -4.0930 0.0271 14 6 10.2278 -4.4853 1.5173 15 7 10.2676 -3.2408 2.2992 16 6 10.1973 -3.1532 3.6639 17 1 10.3195 -2.1968 4.1506 18 6 9.9691 -4.2935 4.4219 19 7 9.9586 -5.4763 3.8445 20 14 9.6770 -4.1495 6.2612 21 1 8.2169 -4.1090 6.5289 22 1 10.2743 -5.3213 6.9506 23 1 10.3077 -2.9036 6.7665 24 6 10.3967 -2.1030 1.3706 25 6 5.5098 -2.4719 0.0073 26 6 4.1533 -2.4351 0.0007 27 6 3.4804 -1.1987 -0.0001 28 7 2.1451 -1.1455 -0.0050 29 1 -0.3633 -0.0001 -1.0277 30 1 -0.3634 -0.8900 0.5139 31 1 -0.3634 0.8900 0.5138 32 1 1.6312 2.1444 -0.0006 33 1 4.0926 2.1700 0.0103 34 1 6.2144 0.8576 0.0181 35 1 7.8361 -3.3683 0.0160 36 1 10.0983 -0.8040 -1.0977 37 1 11.4990 -1.9021 -1.1196 38 1 10.0544 -2.2828 -2.0873 39 1 9.6502 -4.7179 -0.5737 40 1 11.3369 -4.1592 -0.3352 41 1 9.2945 -5.0144 1.7098 42 1 11.0759 -5.1168 1.7823 43 1 9.7988 -6.2731 4.3740 44 1 11.4442 -1.8255 1.2540 45 1 9.8158 -1.2532 1.7290 46 1 6.0165 -3.4256 0.0083 47 1 3.5890 -3.3559 -0.0048 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001046715834.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:26:02 Heat of formation + Delta-G solvation = 45.667599 kcal Electronic energy + Delta-G solvation = -29027.417349 eV Core-core repulsion = 25175.629874 eV Total energy + Delta-G solvation = -3851.787476 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.10690 -39.88110 -37.75406 -36.71419 -34.05947 -33.67370 -32.56895 -31.61537 -30.24145 -30.01929 -28.72217 -28.04630 -25.67190 -24.13373 -23.98557 -23.32919 -22.22978 -21.06528 -20.18429 -19.25233 -18.20409 -17.96889 -16.84328 -16.48971 -15.94000 -15.46227 -15.03385 -14.67539 -14.59325 -14.57335 -14.30405 -14.00852 -13.73056 -13.57282 -13.36268 -13.24354 -13.11381 -12.79134 -12.51289 -12.21434 -12.06306 -11.92584 -11.85478 -11.67124 -11.55534 -11.36064 -10.89441 -10.87101 -10.78392 -10.40892 -10.35855 -10.07279 -10.01832 -9.71491 -9.67457 -9.34762 -8.90598 -8.67608 -8.53023 -8.35825 -6.79378 -5.71508 -3.02072 0.08732 0.50866 1.75918 2.35812 3.34483 3.41206 3.45613 3.47269 3.48609 3.90749 3.98799 4.33137 4.44248 4.51874 4.56942 4.71119 4.83694 4.97781 4.98263 5.14144 5.17613 5.23828 5.26112 5.36969 5.48061 5.57348 5.62390 5.66276 5.68563 5.72440 5.81643 5.86091 6.00469 6.09767 6.15153 6.15915 6.19702 6.31739 6.36467 6.40130 6.52923 6.60014 6.68832 6.80358 7.10888 7.53311 7.57471 7.70615 7.80477 7.87162 8.26534 8.51350 9.23909 9.84113 10.50413 11.40922 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.011833 B = 0.003077 C = 0.002695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2365.661039 B = 9096.307430 C =10387.578799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.162 3.838 3 C -0.180 4.180 4 C -0.043 4.043 5 C -0.118 4.118 6 C -0.028 4.028 7 C -0.126 4.126 8 C 0.560 3.440 9 O -0.538 6.538 10 N -0.693 5.693 11 C 0.157 3.843 12 C -0.152 4.152 13 C -0.147 4.147 14 C 0.176 3.824 15 N -0.603 5.603 16 C -0.222 4.222 17 H 0.076 0.924 18 C -0.008 4.008 19 N -0.922 5.922 20 Si 0.908 3.092 21 H -0.290 1.290 22 H -0.291 1.291 23 H -0.281 1.281 24 C 0.133 3.867 25 C -0.069 4.069 26 C -0.101 4.101 27 C 0.148 3.852 28 N -0.480 5.480 29 H 0.081 0.919 30 H 0.079 0.921 31 H 0.077 0.923 32 H 0.138 0.862 33 H 0.142 0.858 34 H 0.145 0.855 35 H 0.398 0.602 36 H 0.078 0.922 37 H 0.062 0.938 38 H 0.049 0.951 39 H 0.064 0.936 40 H 0.074 0.926 41 H 0.047 0.953 42 H 0.042 0.958 43 H 0.251 0.749 44 H 0.026 0.974 45 H 0.050 0.950 46 H 0.135 0.865 47 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.907 9.575 -13.047 22.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.010 3.990 3 C -0.200 4.200 4 C -0.068 4.068 5 C -0.120 4.120 6 C -0.047 4.047 7 C -0.129 4.129 8 C 0.347 3.653 9 O -0.417 6.417 10 N -0.343 5.343 11 C 0.070 3.930 12 C -0.211 4.211 13 C -0.186 4.186 14 C 0.051 3.949 15 N -0.329 5.329 16 C -0.351 4.351 17 H 0.094 0.906 18 C -0.204 4.204 19 N -0.570 5.570 20 Si 0.739 3.261 21 H -0.217 1.217 22 H -0.218 1.218 23 H -0.207 1.207 24 C 0.006 3.994 25 C -0.089 4.089 26 C -0.120 4.120 27 C 0.027 3.973 28 N -0.189 5.189 29 H 0.099 0.901 30 H 0.098 0.902 31 H 0.095 0.905 32 H 0.156 0.844 33 H 0.160 0.840 34 H 0.163 0.837 35 H 0.234 0.766 36 H 0.097 0.903 37 H 0.081 0.919 38 H 0.068 0.932 39 H 0.083 0.917 40 H 0.092 0.908 41 H 0.065 0.935 42 H 0.061 0.939 43 H 0.061 0.939 44 H 0.044 0.956 45 H 0.069 0.931 46 H 0.153 0.847 47 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -14.798 9.273 -12.850 21.682 hybrid contribution 0.087 0.258 1.135 1.167 sum -14.712 9.531 -11.715 21.084 Atomic orbital electron populations 1.20795 0.88596 1.03764 1.03299 1.21549 0.97195 0.88257 0.92041 1.21698 0.94987 0.99266 1.04066 1.21559 0.94483 0.97322 0.93481 1.18793 0.94413 0.94285 1.04553 1.21414 0.92153 0.98135 0.93045 1.20073 0.93816 0.93980 1.05043 1.18027 0.86689 0.83968 0.76604 1.90704 1.66333 1.34297 1.50335 1.45740 1.07350 1.07727 1.73507 1.21514 0.78480 0.96712 0.96275 1.22037 1.00550 1.02225 0.96275 1.23235 1.00746 0.93580 1.01009 1.21170 1.01126 0.88695 0.83894 1.44443 1.86552 1.00284 1.01640 1.19055 1.41519 0.94225 0.80265 0.90593 1.24772 1.02233 0.95332 0.98049 1.69958 1.56085 0.96841 1.34116 0.86149 0.77910 0.76947 0.85136 1.21713 1.21795 1.20663 1.21880 0.97069 0.92129 0.88325 1.21022 0.93815 0.97920 0.96129 1.20653 0.93731 0.96567 1.01013 1.18942 0.89021 0.92933 0.96419 1.67887 1.08400 1.28746 1.13875 0.90086 0.90200 0.90457 0.84435 0.83986 0.83715 0.76646 0.90323 0.91872 0.93188 0.91745 0.90770 0.93487 0.93949 0.93864 0.95616 0.93137 0.84718 0.84187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.70 10.14 36.00 0.37 -0.33 16 2 C 0.16 1.64 6.78 -82.49 -0.56 1.08 16 3 C -0.18 -1.56 9.64 -39.78 -0.38 -1.94 16 4 C -0.04 -0.42 9.89 -39.18 -0.39 -0.80 16 5 C -0.12 -1.48 5.74 -106.82 -0.61 -2.10 16 6 C -0.03 -0.37 9.35 -38.74 -0.36 -0.73 16 7 C -0.13 -1.83 5.87 -104.98 -0.62 -2.44 16 8 C 0.56 9.47 7.14 -12.36 -0.09 9.38 16 9 O -0.54 -10.31 13.16 5.31 0.07 -10.24 16 10 N -0.69 -11.42 5.13 -46.58 -0.24 -11.66 16 11 C 0.16 2.77 0.83 -129.67 -0.11 2.66 16 12 C -0.15 -2.34 8.52 37.16 0.32 -2.02 16 13 C -0.15 -2.58 5.97 -24.90 -0.15 -2.73 16 14 C 0.18 4.11 5.37 -3.07 -0.02 4.10 16 15 N -0.60 -15.40 3.39 -170.07 -0.58 -15.98 16 16 C -0.22 -6.30 10.27 -15.06 -0.15 -6.45 16 17 H 0.08 2.13 7.84 -52.49 -0.41 1.72 16 18 C -0.01 -0.23 5.48 -17.43 -0.10 -0.32 16 19 N -0.92 -26.82 10.36 55.49 0.57 -26.25 16 20 Si 0.91 22.47 29.56 -169.99 -5.02 17.44 16 21 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 22 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 23 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 24 C 0.13 2.91 6.17 -2.53 -0.02 2.90 16 25 C -0.07 -0.88 9.44 -39.59 -0.37 -1.25 16 26 C -0.10 -1.27 9.95 -39.54 -0.39 -1.66 16 27 C 0.15 1.98 6.61 -84.78 -0.56 1.42 16 28 N -0.48 -6.14 10.23 -7.16 -0.07 -6.21 16 29 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 30 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.08 0.34 8.07 -51.93 -0.42 -0.08 16 32 H 0.14 0.74 8.06 -52.49 -0.42 0.32 16 33 H 0.14 1.00 8.06 -52.49 -0.42 0.58 16 34 H 0.15 1.82 7.62 -52.49 -0.40 1.42 16 35 H 0.40 5.86 6.50 -40.82 -0.27 5.60 16 36 H 0.08 1.32 6.00 -51.93 -0.31 1.00 16 37 H 0.06 0.90 8.13 -51.93 -0.42 0.48 16 38 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.06 0.97 8.09 -51.93 -0.42 0.55 16 40 H 0.07 1.21 8.04 -51.93 -0.42 0.80 16 41 H 0.05 1.20 7.30 -51.93 -0.38 0.82 16 42 H 0.04 1.11 7.61 -51.93 -0.40 0.71 16 43 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 44 H 0.03 0.57 8.03 -51.93 -0.42 0.15 16 45 H 0.05 1.19 6.86 -51.93 -0.36 0.84 16 46 H 0.14 1.50 6.35 -52.49 -0.33 1.16 16 47 H 0.14 1.52 8.06 -52.49 -0.42 1.10 16 LS Contribution 379.62 15.07 5.72 5.72 Total: -1.00 -33.77 379.62 -10.36 -44.13 By element: Atomic # 1 Polarization: 10.92 SS G_CDS: -6.62 Total: 4.30 kcal Atomic # 6 Polarization: 2.93 SS G_CDS: -4.19 Total: -1.26 kcal Atomic # 7 Polarization: -59.79 SS G_CDS: -0.31 Total: -60.10 kcal Atomic # 8 Polarization: -10.31 SS G_CDS: 0.07 Total: -10.24 kcal Atomic # 14 Polarization: 22.47 SS G_CDS: -5.02 Total: 17.44 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -33.77 -10.36 -44.13 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046715834.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.802 kcal (2) G-P(sol) polarization free energy of solvation -33.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.134 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds