Wall clock time and date at job start Tue Mar 31 2020 22:26:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.39318 * 119.11416 * 2 1 4 4 C 1.36584 * 119.90360 * 179.69722 * 3 2 1 5 5 C 1.40892 * 118.15700 * 0.27646 * 4 3 2 6 6 C 1.40180 * 121.21730 * 180.02562 * 5 4 3 7 7 C 1.38549 * 119.40115 * 179.97438 * 6 5 4 8 8 C 1.47768 * 119.80514 * 179.97438 * 7 6 5 9 9 O 1.21562 * 120.00127 * 0.02562 * 8 7 6 10 10 N 1.34778 * 120.00340 * 180.02562 * 8 7 6 11 11 C 1.46496 * 120.00452 * 180.02562 * 10 8 7 12 12 C 1.53001 * 110.88701 * 303.88247 * 11 10 8 13 13 C 1.55156 * 111.00745 * 179.97438 * 11 10 8 14 14 C 1.54320 * 102.94180 * 277.42949 * 13 11 10 15 15 N 1.47023 * 107.27341 * 337.80251 * 14 13 11 16 16 C 1.36934 * 125.64850 * 178.98470 * 15 14 13 17 17 H 1.08001 * 120.00042 * 174.79108 * 16 15 14 18 18 C 1.38816 * 120.00145 * 354.79480 * 16 15 14 19 19 N 1.31619 * 119.99861 * 7.05301 * 18 16 15 20 20 Si 1.86794 * 120.00159 * 187.05134 * 18 16 15 21 21 H 1.48499 * 109.47348 * 94.98488 * 20 18 16 22 22 H 1.48498 * 109.47482 * 214.98866 * 20 18 16 23 23 H 1.48506 * 109.46941 * 334.98452 * 20 18 16 24 24 C 1.47428 * 108.70050 * 358.94355 * 15 14 13 25 25 C 1.40635 * 120.39302 * 0.02562 * 7 6 5 26 26 C 1.35702 * 120.92010 * 359.97438 * 25 7 6 27 27 C 1.40764 * 120.11198 * 0.02562 * 26 25 7 28 28 N 1.31130 * 119.12051 * 180.24859 * 2 1 3 29 29 H 1.09001 * 109.47071 * 90.00767 * 1 2 3 30 30 H 1.09004 * 109.47207 * 210.00395 * 1 2 3 31 31 H 1.09002 * 109.47329 * 330.00285 * 1 2 3 32 32 H 1.07993 * 120.05016 * 359.96471 * 3 2 1 33 33 H 1.07998 * 120.92111 * 180.24641 * 4 3 2 34 34 H 1.07994 * 120.29975 * 359.97438 * 6 5 4 35 35 H 0.96998 * 119.99481 * 0.02562 * 10 8 7 36 36 H 1.09005 * 109.46907 * 59.29381 * 12 11 10 37 37 H 1.08995 * 109.47263 * 179.29678 * 12 11 10 38 38 H 1.08998 * 109.46891 * 299.29947 * 12 11 10 39 39 H 1.09004 * 110.71419 * 35.79021 * 13 11 10 40 40 H 1.08997 * 110.72167 * 158.88720 * 13 11 10 41 41 H 1.09002 * 109.88353 * 97.22561 * 14 13 11 42 42 H 1.09007 * 109.87866 * 218.38490 * 14 13 11 43 43 H 0.97002 * 120.00098 * 180.02562 * 19 18 16 44 44 H 1.08995 * 110.36730 * 265.28237 * 24 15 14 45 45 H 1.09000 * 110.36090 * 142.96308 * 24 15 14 46 46 H 1.07994 * 119.54233 * 180.02562 * 25 7 6 47 47 H 1.07999 * 119.94558 * 179.97438 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1848 1.2172 0.0000 4 6 3.5505 1.2360 0.0063 5 6 4.2324 0.0031 0.0066 6 6 5.6331 -0.0525 0.0134 7 6 6.2649 -1.2855 0.0140 8 6 7.7410 -1.3545 0.0205 9 8 8.3972 -0.3312 0.0258 10 7 8.3597 -2.5518 0.0206 11 6 9.8231 -2.6202 0.0277 12 6 10.4110 -1.8467 -1.1542 13 6 10.3111 -4.0930 0.0271 14 6 10.2278 -4.4853 1.5173 15 7 10.2676 -3.2408 2.2992 16 6 10.1973 -3.1532 3.6639 17 1 10.3195 -2.1968 4.1506 18 6 9.9691 -4.2935 4.4219 19 7 9.9586 -5.4763 3.8445 20 14 9.6770 -4.1495 6.2612 21 1 8.2169 -4.1090 6.5289 22 1 10.2743 -5.3213 6.9506 23 1 10.3077 -2.9036 6.7665 24 6 10.3967 -2.1030 1.3706 25 6 5.5098 -2.4719 0.0073 26 6 4.1533 -2.4351 0.0007 27 6 3.4804 -1.1987 -0.0001 28 7 2.1451 -1.1455 -0.0050 29 1 -0.3633 -0.0001 -1.0277 30 1 -0.3634 -0.8900 0.5139 31 1 -0.3634 0.8900 0.5138 32 1 1.6312 2.1444 -0.0006 33 1 4.0926 2.1700 0.0103 34 1 6.2144 0.8576 0.0181 35 1 7.8361 -3.3683 0.0160 36 1 10.0983 -0.8040 -1.0977 37 1 11.4990 -1.9021 -1.1196 38 1 10.0544 -2.2828 -2.0873 39 1 9.6502 -4.7179 -0.5737 40 1 11.3369 -4.1592 -0.3352 41 1 9.2945 -5.0144 1.7098 42 1 11.0759 -5.1168 1.7823 43 1 9.7988 -6.2731 4.3740 44 1 11.4442 -1.8255 1.2540 45 1 9.8158 -1.2532 1.7290 46 1 6.0165 -3.4256 0.0083 47 1 3.5890 -3.3559 -0.0048 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001046715834.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:26:01 Heat of formation + Delta-G solvation = 24.718786 kcal Electronic energy + Delta-G solvation = -29028.325758 eV Core-core repulsion = 25175.629874 eV Total energy + Delta-G solvation = -3852.695884 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.03863 -41.16997 -39.13897 -37.86034 -35.72224 -34.58908 -33.88524 -32.93563 -31.62764 -31.13333 -30.36604 -28.88850 -27.52625 -25.56620 -24.97217 -24.52821 -23.10944 -22.41145 -21.86282 -20.63230 -19.41415 -19.01028 -18.64897 -17.47411 -17.03188 -16.85448 -16.61044 -16.14204 -15.71853 -15.66740 -15.54088 -15.42152 -14.96948 -14.80301 -14.51581 -14.21945 -13.95072 -13.90358 -13.85006 -13.57655 -13.40932 -13.11220 -13.09426 -13.00247 -12.84874 -12.76469 -12.46801 -12.26429 -12.10632 -12.03920 -11.99042 -11.72225 -11.63102 -11.59933 -10.73273 -10.70001 -10.53755 -10.06688 -9.73818 -9.33410 -8.86906 -7.88232 -5.20380 -0.82263 -0.37386 0.84748 1.38391 1.42138 1.43421 1.52212 2.11491 2.31363 2.46700 3.02686 3.13622 3.29958 3.51458 3.53152 3.63690 3.66143 3.75181 3.85995 3.96569 4.02471 4.03881 4.18389 4.24804 4.38519 4.63396 4.65157 4.69265 4.76133 4.80045 4.81918 4.85913 4.87072 4.92098 4.93533 4.99082 5.02270 5.08072 5.17621 5.19355 5.23531 5.38545 5.42739 5.49893 5.62997 5.67507 5.74156 5.76819 6.18945 6.57638 6.88214 7.10492 7.21723 7.76150 8.40827 9.22046 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.011833 B = 0.003077 C = 0.002695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2365.661039 B = 9096.307430 C =10387.578799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.158 3.842 3 C -0.172 4.172 4 C -0.047 4.047 5 C -0.135 4.135 6 C -0.024 4.024 7 C -0.149 4.149 8 C 0.559 3.441 9 O -0.567 6.567 10 N -0.693 5.693 11 C 0.167 3.833 12 C -0.143 4.143 13 C -0.129 4.129 14 C 0.183 3.817 15 N -0.621 5.621 16 C -0.242 4.242 17 H 0.068 0.932 18 C -0.057 4.057 19 N -0.942 5.942 20 Si 0.970 3.030 21 H -0.288 1.288 22 H -0.290 1.290 23 H -0.274 1.274 24 C 0.130 3.870 25 C -0.071 4.071 26 C -0.108 4.108 27 C 0.131 3.869 28 N -0.511 5.511 29 H 0.096 0.904 30 H 0.072 0.928 31 H 0.104 0.896 32 H 0.178 0.822 33 H 0.169 0.831 34 H 0.147 0.853 35 H 0.406 0.594 36 H 0.063 0.937 37 H 0.075 0.925 38 H 0.074 0.926 39 H 0.097 0.903 40 H 0.094 0.906 41 H 0.020 0.980 42 H 0.008 0.992 43 H 0.248 0.752 44 H 0.028 0.972 45 H 0.026 0.974 46 H 0.146 0.854 47 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.772 10.869 -14.138 24.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.006 3.994 3 C -0.191 4.191 4 C -0.073 4.073 5 C -0.138 4.138 6 C -0.044 4.044 7 C -0.153 4.153 8 C 0.347 3.653 9 O -0.448 6.448 10 N -0.343 5.343 11 C 0.080 3.920 12 C -0.201 4.201 13 C -0.167 4.167 14 C 0.059 3.941 15 N -0.347 5.347 16 C -0.371 4.371 17 H 0.086 0.914 18 C -0.250 4.250 19 N -0.591 5.591 20 Si 0.799 3.201 21 H -0.216 1.216 22 H -0.216 1.216 23 H -0.199 1.199 24 C 0.003 3.997 25 C -0.092 4.092 26 C -0.126 4.126 27 C 0.010 3.990 28 N -0.221 5.221 29 H 0.114 0.886 30 H 0.091 0.909 31 H 0.123 0.877 32 H 0.196 0.804 33 H 0.187 0.813 34 H 0.165 0.835 35 H 0.243 0.757 36 H 0.082 0.918 37 H 0.094 0.906 38 H 0.093 0.907 39 H 0.115 0.885 40 H 0.112 0.888 41 H 0.039 0.961 42 H 0.026 0.974 43 H 0.057 0.943 44 H 0.045 0.955 45 H 0.045 0.955 46 H 0.164 0.836 47 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -16.671 10.572 -13.964 24.180 hybrid contribution 0.527 -0.026 1.495 1.586 sum -16.144 10.546 -12.469 22.964 Atomic orbital electron populations 1.20927 0.86051 1.04801 1.04505 1.22312 0.98996 0.88198 0.89900 1.22146 0.94694 1.00317 1.01951 1.21940 0.95289 0.97253 0.92798 1.18980 0.94011 0.95458 1.05309 1.21523 0.92802 0.97834 0.92267 1.19969 0.92429 0.95190 1.07665 1.18385 0.87673 0.83524 0.75671 1.90678 1.67208 1.35138 1.51735 1.45729 1.06987 1.08197 1.73425 1.21396 0.79201 0.96668 0.94756 1.21960 1.01236 1.00954 0.95964 1.23113 1.02889 0.93706 0.97021 1.20969 0.98222 0.87472 0.87483 1.44683 1.86359 1.02169 1.01472 1.19301 1.41627 0.94057 0.82120 0.91396 1.25503 1.02389 0.95088 1.02041 1.70145 1.56613 0.97105 1.35241 0.85189 0.77553 0.77022 0.80385 1.21564 1.21611 1.19883 1.21994 0.97033 0.90549 0.90084 1.21076 0.93964 0.97838 0.96276 1.20827 0.93695 0.97156 1.00944 1.19193 0.89735 0.93429 0.96659 1.67945 1.08091 1.30397 1.15705 0.88596 0.90898 0.87701 0.80437 0.81340 0.83493 0.75706 0.91814 0.90578 0.90690 0.88455 0.88801 0.96149 0.97381 0.94274 0.95461 0.95537 0.83611 0.83099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.06 10.14 71.23 0.72 -0.34 16 2 C 0.16 2.82 6.78 42.92 0.29 3.11 16 3 C -0.17 -2.41 9.64 22.14 0.21 -2.20 16 4 C -0.05 -0.82 9.89 22.53 0.22 -0.60 16 5 C -0.14 -3.31 5.74 -21.29 -0.12 -3.43 16 6 C -0.02 -0.66 9.35 22.82 0.21 -0.45 16 7 C -0.15 -4.41 5.87 -20.10 -0.12 -4.53 16 8 C 0.56 19.16 7.14 86.76 0.62 19.78 16 9 O -0.57 -22.17 13.16 -3.91 -0.05 -22.23 16 10 N -0.69 -22.72 5.13 -419.55 -2.15 -24.87 16 11 C 0.17 5.77 0.83 5.00 0.00 5.77 16 12 C -0.14 -4.12 8.52 71.98 0.61 -3.51 16 13 C -0.13 -4.34 5.97 31.78 0.19 -4.15 16 14 C 0.18 8.74 5.37 86.73 0.47 9.20 16 15 N -0.62 -32.58 3.39 -691.97 -2.35 -34.93 16 16 C -0.24 -14.11 10.27 84.03 0.86 -13.25 16 17 H 0.07 3.95 7.84 -2.91 -0.02 3.93 16 18 C -0.06 -3.27 5.48 84.86 0.46 -2.81 16 19 N -0.94 -56.20 10.36 21.65 0.22 -55.98 16 20 Si 0.97 46.99 29.56 68.60 2.03 49.02 16 21 H -0.29 -13.85 7.11 99.48 0.71 -13.14 16 22 H -0.29 -13.88 7.11 99.48 0.71 -13.17 16 23 H -0.27 -12.81 7.11 99.48 0.71 -12.10 16 24 C 0.13 5.79 6.17 86.86 0.54 6.32 16 25 C -0.07 -1.85 9.44 22.27 0.21 -1.64 16 26 C -0.11 -2.73 9.95 22.30 0.22 -2.51 16 27 C 0.13 3.47 6.61 40.36 0.27 3.73 16 28 N -0.51 -12.62 10.23 -176.58 -1.81 -14.42 16 29 H 0.10 0.72 8.14 -2.39 -0.02 0.70 16 30 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.10 0.48 8.07 -2.39 -0.02 0.47 16 32 H 0.18 1.02 8.06 -2.91 -0.02 1.00 16 33 H 0.17 1.91 8.06 -2.91 -0.02 1.88 16 34 H 0.15 3.74 7.62 -2.91 -0.02 3.72 16 35 H 0.41 11.83 6.50 -92.71 -0.60 11.23 16 36 H 0.06 2.08 6.00 -2.38 -0.01 2.06 16 37 H 0.08 1.99 8.13 -2.39 -0.02 1.97 16 38 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 39 H 0.10 2.68 8.09 -2.38 -0.02 2.66 16 40 H 0.09 2.84 8.04 -2.39 -0.02 2.82 16 41 H 0.02 1.06 7.30 -2.39 -0.02 1.05 16 42 H 0.01 0.43 7.61 -2.38 -0.02 0.41 16 43 H 0.25 14.36 8.31 -92.71 -0.77 13.59 16 44 H 0.03 1.21 8.03 -2.39 -0.02 1.19 16 45 H 0.03 1.30 6.86 -2.39 -0.02 1.28 16 46 H 0.15 3.27 6.35 -2.91 -0.02 3.25 16 47 H 0.15 3.31 8.06 -2.91 -0.02 3.29 16 Total: -1.00 -76.35 379.62 2.16 -74.19 By element: Atomic # 1 Polarization: 20.32 SS G_CDS: 0.39 Total: 20.71 kcal Atomic # 6 Polarization: 2.63 SS G_CDS: 5.88 Total: 8.51 kcal Atomic # 7 Polarization: -124.12 SS G_CDS: -6.08 Total: -130.20 kcal Atomic # 8 Polarization: -22.17 SS G_CDS: -0.05 Total: -22.23 kcal Atomic # 14 Polarization: 46.99 SS G_CDS: 2.03 Total: 49.02 kcal Total: -76.35 2.16 -74.19 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046715834.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.909 kcal (2) G-P(sol) polarization free energy of solvation -76.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.190 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds