Wall clock time and date at job start Tue Mar 31 2020 22:43:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46502 * 110.63917 * 2 1 4 4 C 1.34776 * 119.99601 * 298.30992 * 3 2 1 5 5 O 1.21727 * 120.00641 * 359.97438 * 4 3 2 6 6 C 1.46396 * 119.99716 * 180.27609 * 4 3 2 7 7 N 1.37636 * 126.32841 * 359.41344 * 6 4 3 8 8 H 0.96999 * 125.54843 * 359.96336 * 7 6 4 9 9 C 1.35642 * 108.89837 * 179.83004 * 7 6 4 10 10 C 1.35127 * 109.22352 * 0.44113 * 9 7 6 11 11 C 1.39103 * 126.32884 * 179.72127 * 6 4 3 12 12 C 1.48176 * 126.62846 * 0.02562 * 11 6 4 13 13 C 1.39452 * 120.13067 * 309.71840 * 12 11 6 14 14 C 1.37985 * 119.86175 * 179.72488 * 13 12 11 15 15 C 1.38342 * 120.13561 * 0.55655 * 14 13 12 16 16 C 1.38341 * 120.26429 * 359.72012 * 15 14 13 17 17 C 1.37990 * 120.13251 * 359.97438 * 16 15 14 18 18 C 1.55163 * 110.87221 * 123.24286 * 2 1 3 19 19 C 1.54913 * 101.57916 * 153.93867 * 18 2 1 20 20 N 1.47422 * 104.83359 * 322.99235 * 19 18 2 21 21 C 1.36939 * 125.64697 * 204.09161 * 20 19 18 22 22 H 1.08000 * 119.99720 * 169.98804 * 21 20 19 23 23 C 1.38810 * 120.00118 * 349.98996 * 21 20 19 24 24 N 1.31626 * 119.99886 * 350.41556 * 23 21 20 25 25 Si 1.86798 * 120.00045 * 170.42051 * 23 21 20 26 26 H 1.48501 * 109.47348 * 94.13703 * 25 23 21 27 27 H 1.48505 * 109.46926 * 214.13622 * 25 23 21 28 28 H 1.48492 * 109.47120 * 334.13533 * 25 23 21 29 29 C 1.47022 * 108.70418 * 24.12643 * 20 19 18 30 30 H 1.08997 * 109.47021 * 59.30416 * 1 2 3 31 31 H 1.09009 * 109.46974 * 179.30041 * 1 2 3 32 32 H 1.08999 * 109.47672 * 299.29963 * 1 2 3 33 33 H 0.96999 * 120.00474 * 118.31345 * 3 2 1 34 34 H 1.08002 * 125.38903 * 180.17087 * 9 7 6 35 35 H 1.07993 * 126.10311 * 179.76611 * 10 9 7 36 36 H 1.07996 * 120.06374 * 0.02562 * 13 12 11 37 37 H 1.08004 * 119.93256 * 180.25379 * 14 13 12 38 38 H 1.08000 * 119.86766 * 179.74348 * 15 14 13 39 39 H 1.08005 * 119.93533 * 180.02562 * 16 15 14 40 40 H 1.07994 * 120.06572 * 180.02562 * 17 16 15 41 41 H 1.08994 * 111.00154 * 272.01271 * 18 2 1 42 42 H 1.08997 * 110.99931 * 35.86701 * 18 2 1 43 43 H 1.08997 * 110.36686 * 204.14974 * 19 18 2 44 44 H 1.09004 * 110.45823 * 81.87878 * 19 18 2 45 45 H 0.96996 * 119.99524 * 180.02562 * 24 23 21 46 46 H 1.08997 * 109.88812 * 239.52286 * 29 20 19 47 47 H 1.09001 * 110.00919 * 118.43040 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0464 1.3710 0.0000 4 6 1.7659 2.1967 -1.0276 5 8 1.0839 1.8032 -1.9560 6 6 2.2869 3.5648 -1.0306 7 7 3.0620 4.1442 -0.0519 8 1 3.3574 3.7105 0.7640 9 6 3.3481 5.4193 -0.4155 10 6 2.7664 5.6835 -1.6061 11 6 2.0851 4.5213 -2.0201 12 6 1.3042 4.3513 -3.2679 13 6 1.5364 3.2527 -4.0949 14 6 0.8021 3.0969 -5.2526 15 6 -0.1549 4.0338 -5.5995 16 6 -0.3857 5.1287 -4.7861 17 6 0.3379 5.2921 -3.6226 18 6 2.0828 -0.7948 1.2126 19 6 3.4674 -1.2454 0.6838 20 7 3.2472 -1.5461 -0.7425 21 6 4.0079 -2.3900 -1.5070 22 1 3.6750 -2.6711 -2.4952 23 6 5.2068 -2.8842 -1.0117 24 7 5.7064 -2.4005 0.1059 25 14 6.1111 -4.2354 -1.9313 26 1 7.1220 -3.6287 -2.8342 27 1 6.7894 -5.1283 -0.9577 28 1 5.1408 -5.0234 -2.7330 29 6 2.0760 -0.7892 -1.2085 30 1 -0.3633 0.5246 -0.8837 31 1 -0.3633 -1.0277 -0.0125 32 1 -0.3634 0.5029 0.8962 33 1 2.5902 1.6845 0.7395 34 1 3.9427 6.1148 0.1582 35 1 2.8154 6.6183 -2.1448 36 1 2.2861 2.5229 -3.8271 37 1 0.9781 2.2443 -5.8918 38 1 -0.7243 3.9097 -6.5088 39 1 -1.1344 5.8567 -5.0619 40 1 0.1565 6.1471 -2.9882 41 1 2.1886 -0.1513 2.0859 42 1 1.4515 -1.6545 1.4367 43 1 3.8032 -2.1376 1.2122 44 1 4.1969 -0.4430 0.7941 45 1 6.5444 -2.7456 0.4517 46 1 1.3141 -1.4754 -1.5780 47 1 2.3686 -0.0994 -2.0001 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001046760768.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:43:41 Heat of formation + Delta-G solvation = 65.470070 kcal Electronic energy + Delta-G solvation = -29740.069840 eV Core-core repulsion = 25889.141064 eV Total energy + Delta-G solvation = -3850.928776 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.36721 -39.48765 -38.59476 -37.13611 -34.07924 -32.60854 -31.91426 -30.70996 -30.36087 -29.57748 -28.75886 -28.29549 -25.71216 -23.94994 -23.23673 -22.33368 -22.02326 -20.71234 -20.47136 -19.24759 -19.04970 -18.70085 -16.84674 -16.48126 -15.73617 -15.50171 -15.14005 -14.84891 -14.66319 -14.51772 -13.97166 -13.89893 -13.60974 -13.46995 -13.32494 -13.15345 -12.81048 -12.73200 -12.70630 -12.25360 -12.15955 -12.00037 -11.72224 -11.62057 -11.02435 -10.97315 -10.85013 -10.82035 -10.46372 -10.42373 -10.12151 -10.04930 -9.71336 -9.51539 -9.25546 -8.72828 -8.64310 -8.58424 -8.47173 -7.90183 -6.78799 -5.75892 -3.06657 1.17280 1.68311 1.79983 2.72165 3.02630 3.36718 3.39834 3.45525 3.47880 3.58854 4.08233 4.49894 4.81153 4.90783 5.03507 5.09772 5.16058 5.20512 5.33141 5.35414 5.36144 5.45531 5.52685 5.68172 5.70103 5.71501 5.80434 5.98006 6.06571 6.12019 6.16106 6.21252 6.28413 6.29394 6.38323 6.47580 6.53623 6.65827 6.67259 6.74461 6.80899 6.85373 6.94888 7.11888 7.22823 7.29375 7.41979 7.50338 7.75377 7.80261 8.25021 8.48174 9.19606 9.81455 10.48767 11.37780 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.011945 B = 0.003419 C = 0.003187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2343.564792 B = 8186.925043 C = 8782.209852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.163 3.837 3 N -0.709 5.709 4 C 0.585 3.415 5 O -0.512 6.512 6 C -0.031 4.031 7 N -0.537 5.537 8 H 0.418 0.582 9 C 0.019 3.981 10 C -0.197 4.197 11 C -0.050 4.050 12 C -0.015 4.015 13 C -0.060 4.060 14 C -0.123 4.123 15 C -0.123 4.123 16 C -0.133 4.133 17 C -0.108 4.108 18 C -0.148 4.148 19 C 0.175 3.825 20 N -0.602 5.602 21 C -0.223 4.223 22 H 0.076 0.924 23 C -0.008 4.008 24 N -0.922 5.922 25 Si 0.910 3.090 26 H -0.289 1.289 27 H -0.290 1.290 28 H -0.280 1.280 29 C 0.137 3.863 30 H 0.073 0.927 31 H 0.064 0.936 32 H 0.048 0.952 33 H 0.389 0.611 34 H 0.171 0.829 35 H 0.143 0.857 36 H 0.122 0.878 37 H 0.119 0.881 38 H 0.115 0.885 39 H 0.116 0.884 40 H 0.117 0.883 41 H 0.062 0.938 42 H 0.077 0.923 43 H 0.070 0.930 44 H 0.023 0.977 45 H 0.251 0.749 46 H 0.031 0.969 47 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.117 17.284 0.478 19.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.077 3.923 3 N -0.359 5.359 4 C 0.372 3.628 5 O -0.387 6.387 6 C -0.145 4.145 7 N -0.133 5.133 8 H 0.256 0.744 9 C -0.116 4.116 10 C -0.221 4.221 11 C -0.059 4.059 12 C -0.015 4.015 13 C -0.078 4.078 14 C -0.141 4.141 15 C -0.141 4.141 16 C -0.151 4.151 17 C -0.126 4.126 18 C -0.187 4.187 19 C 0.049 3.951 20 N -0.329 5.329 21 C -0.352 4.352 22 H 0.093 0.907 23 C -0.204 4.204 24 N -0.569 5.569 25 Si 0.740 3.260 26 H -0.217 1.217 27 H -0.217 1.217 28 H -0.206 1.206 29 C 0.010 3.990 30 H 0.092 0.908 31 H 0.083 0.917 32 H 0.068 0.932 33 H 0.222 0.778 34 H 0.188 0.812 35 H 0.161 0.839 36 H 0.140 0.860 37 H 0.137 0.863 38 H 0.133 0.867 39 H 0.134 0.866 40 H 0.135 0.865 41 H 0.081 0.919 42 H 0.096 0.904 43 H 0.088 0.912 44 H 0.041 0.959 45 H 0.061 0.939 46 H 0.049 0.951 47 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -9.391 16.734 -0.048 19.189 hybrid contribution 1.161 -0.663 0.458 1.413 sum -8.230 16.071 0.410 18.060 Atomic orbital electron populations 1.22037 0.94121 1.02296 1.02325 1.21322 0.92985 0.79981 0.97967 1.45890 1.54038 1.13074 1.22918 1.16895 0.80450 0.82724 0.82753 1.90853 1.38298 1.75136 1.34452 1.20663 1.05563 0.94999 0.93305 1.41991 1.40476 1.11911 1.18904 0.74442 1.21863 1.04711 0.86388 0.98623 1.20860 1.04717 0.99095 0.97423 1.18536 1.00809 0.92759 0.93750 1.18069 0.95740 0.95261 0.92459 1.21193 0.98476 0.95479 0.92696 1.21052 0.96671 0.99057 0.97363 1.21115 0.98418 0.94944 0.99597 1.20926 1.00343 0.98438 0.95353 1.21072 0.95942 0.98730 0.96861 1.23354 1.01147 0.99055 0.95171 1.21377 0.89364 0.99359 0.84951 1.44478 1.30858 1.50834 1.06710 1.19043 0.99485 1.18317 0.98348 0.90659 1.24784 0.96822 1.00681 0.98163 1.69941 1.20558 1.44032 1.22404 0.86134 0.79604 0.81643 0.78610 1.21673 1.21652 1.20561 1.21606 0.90355 0.93103 0.93920 0.90802 0.91702 0.93244 0.77786 0.81209 0.83908 0.86028 0.86301 0.86672 0.86561 0.86471 0.91942 0.90417 0.91182 0.95899 0.93853 0.95144 0.94566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.32 8.45 37.16 0.31 -2.01 16 2 C 0.16 2.85 0.81 -129.98 -0.11 2.75 16 3 N -0.71 -11.07 5.14 -47.28 -0.24 -11.31 16 4 C 0.59 9.76 6.98 -12.98 -0.09 9.67 16 5 O -0.51 -9.79 10.33 5.16 0.05 -9.74 16 6 C -0.03 -0.45 7.07 -81.66 -0.58 -1.03 16 7 N -0.54 -5.71 5.98 -9.23 -0.06 -5.77 16 8 H 0.42 3.36 8.18 -40.82 -0.33 3.02 16 9 C 0.02 0.18 11.86 -16.97 -0.20 -0.02 16 10 C -0.20 -2.22 10.73 -39.67 -0.43 -2.65 16 11 C -0.05 -0.71 5.67 -104.47 -0.59 -1.31 16 12 C -0.01 -0.22 5.27 -104.91 -0.55 -0.77 16 13 C -0.06 -0.96 7.63 -39.22 -0.30 -1.26 16 14 C -0.12 -1.75 10.03 -39.64 -0.40 -2.14 16 15 C -0.12 -1.51 10.04 -39.51 -0.40 -1.91 16 16 C -0.13 -1.57 10.03 -39.63 -0.40 -1.97 16 17 C -0.11 -1.39 9.74 -39.22 -0.38 -1.77 16 18 C -0.15 -2.58 6.09 -24.58 -0.15 -2.73 16 19 C 0.17 4.05 5.40 -2.53 -0.01 4.03 16 20 N -0.60 -15.46 3.39 -170.07 -0.58 -16.04 16 21 C -0.22 -6.34 10.24 -15.06 -0.15 -6.49 16 22 H 0.08 2.11 7.85 -52.49 -0.41 1.69 16 23 C -0.01 -0.24 5.40 -17.43 -0.09 -0.33 16 24 N -0.92 -26.76 10.68 55.49 0.59 -26.17 16 25 Si 0.91 22.27 29.56 -169.99 -5.03 17.24 16 26 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 27 H -0.29 -7.11 7.11 56.52 0.40 -6.70 16 28 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 29 C 0.14 3.02 6.13 -3.06 -0.02 3.00 16 30 H 0.07 1.26 6.37 -51.93 -0.33 0.92 16 31 H 0.06 0.97 8.12 -51.92 -0.42 0.54 16 32 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.39 5.10 7.59 -40.82 -0.31 4.79 16 34 H 0.17 0.95 8.06 -52.49 -0.42 0.53 16 35 H 0.14 1.33 8.06 -52.49 -0.42 0.91 16 36 H 0.12 2.16 7.35 -52.49 -0.39 1.77 16 37 H 0.12 1.52 8.06 -52.48 -0.42 1.10 16 38 H 0.12 1.14 8.06 -52.49 -0.42 0.71 16 39 H 0.12 1.07 8.06 -52.48 -0.42 0.64 16 40 H 0.12 1.28 8.06 -52.49 -0.42 0.86 16 41 H 0.06 0.90 8.04 -51.93 -0.42 0.49 16 42 H 0.08 1.32 8.05 -51.93 -0.42 0.90 16 43 H 0.07 1.82 6.93 -51.93 -0.36 1.46 16 44 H 0.02 0.57 8.07 -51.93 -0.42 0.15 16 45 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 46 H 0.03 0.69 7.80 -51.93 -0.41 0.28 16 47 H 0.04 0.88 6.47 -51.93 -0.34 0.54 16 LS Contribution 379.62 15.07 5.72 5.72 Total: -1.00 -33.71 379.62 -10.71 -44.42 By element: Atomic # 1 Polarization: 15.24 SS G_CDS: -6.64 Total: 8.59 kcal Atomic # 6 Polarization: -2.41 SS G_CDS: -4.54 Total: -6.95 kcal Atomic # 7 Polarization: -59.01 SS G_CDS: -0.28 Total: -59.29 kcal Atomic # 8 Polarization: -9.79 SS G_CDS: 0.05 Total: -9.74 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.03 Total: 17.24 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -33.71 -10.71 -44.42 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046760768.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.889 kcal (2) G-P(sol) polarization free energy of solvation -33.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.419 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds