Wall clock time and date at job start Tue Mar 31 2020 22:43:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46502 * 110.63917 * 2 1 4 4 C 1.34776 * 119.99601 * 298.30992 * 3 2 1 5 5 O 1.21727 * 120.00641 * 359.97438 * 4 3 2 6 6 C 1.46396 * 119.99716 * 180.27609 * 4 3 2 7 7 N 1.37636 * 126.32841 * 359.41344 * 6 4 3 8 8 H 0.96999 * 125.54843 * 359.96336 * 7 6 4 9 9 C 1.35642 * 108.89837 * 179.83004 * 7 6 4 10 10 C 1.35127 * 109.22352 * 0.44113 * 9 7 6 11 11 C 1.39103 * 126.32884 * 179.72127 * 6 4 3 12 12 C 1.48176 * 126.62846 * 0.02562 * 11 6 4 13 13 C 1.39452 * 120.13067 * 309.71840 * 12 11 6 14 14 C 1.37985 * 119.86175 * 179.72488 * 13 12 11 15 15 C 1.38342 * 120.13561 * 0.55655 * 14 13 12 16 16 C 1.38341 * 120.26429 * 359.72012 * 15 14 13 17 17 C 1.37990 * 120.13251 * 359.97438 * 16 15 14 18 18 C 1.55163 * 110.87221 * 123.24286 * 2 1 3 19 19 C 1.54913 * 101.57916 * 153.93867 * 18 2 1 20 20 N 1.47422 * 104.83359 * 322.99235 * 19 18 2 21 21 C 1.36939 * 125.64697 * 204.09161 * 20 19 18 22 22 H 1.08000 * 119.99720 * 169.98804 * 21 20 19 23 23 C 1.38810 * 120.00118 * 349.98996 * 21 20 19 24 24 N 1.31626 * 119.99886 * 350.41556 * 23 21 20 25 25 Si 1.86798 * 120.00045 * 170.42051 * 23 21 20 26 26 H 1.48501 * 109.47348 * 94.13703 * 25 23 21 27 27 H 1.48505 * 109.46926 * 214.13622 * 25 23 21 28 28 H 1.48492 * 109.47120 * 334.13533 * 25 23 21 29 29 C 1.47022 * 108.70418 * 24.12643 * 20 19 18 30 30 H 1.08997 * 109.47021 * 59.30416 * 1 2 3 31 31 H 1.09009 * 109.46974 * 179.30041 * 1 2 3 32 32 H 1.08999 * 109.47672 * 299.29963 * 1 2 3 33 33 H 0.96999 * 120.00474 * 118.31345 * 3 2 1 34 34 H 1.08002 * 125.38903 * 180.17087 * 9 7 6 35 35 H 1.07993 * 126.10311 * 179.76611 * 10 9 7 36 36 H 1.07996 * 120.06374 * 0.02562 * 13 12 11 37 37 H 1.08004 * 119.93256 * 180.25379 * 14 13 12 38 38 H 1.08000 * 119.86766 * 179.74348 * 15 14 13 39 39 H 1.08005 * 119.93533 * 180.02562 * 16 15 14 40 40 H 1.07994 * 120.06572 * 180.02562 * 17 16 15 41 41 H 1.08994 * 111.00154 * 272.01271 * 18 2 1 42 42 H 1.08997 * 110.99931 * 35.86701 * 18 2 1 43 43 H 1.08997 * 110.36686 * 204.14974 * 19 18 2 44 44 H 1.09004 * 110.45823 * 81.87878 * 19 18 2 45 45 H 0.96996 * 119.99524 * 180.02562 * 24 23 21 46 46 H 1.08997 * 109.88812 * 239.52286 * 29 20 19 47 47 H 1.09001 * 110.00919 * 118.43040 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0464 1.3710 0.0000 4 6 1.7659 2.1967 -1.0276 5 8 1.0839 1.8032 -1.9560 6 6 2.2869 3.5648 -1.0306 7 7 3.0620 4.1442 -0.0519 8 1 3.3574 3.7105 0.7640 9 6 3.3481 5.4193 -0.4155 10 6 2.7664 5.6835 -1.6061 11 6 2.0851 4.5213 -2.0201 12 6 1.3042 4.3513 -3.2679 13 6 1.5364 3.2527 -4.0949 14 6 0.8021 3.0969 -5.2526 15 6 -0.1549 4.0338 -5.5995 16 6 -0.3857 5.1287 -4.7861 17 6 0.3379 5.2921 -3.6226 18 6 2.0828 -0.7948 1.2126 19 6 3.4674 -1.2454 0.6838 20 7 3.2472 -1.5461 -0.7425 21 6 4.0079 -2.3900 -1.5070 22 1 3.6750 -2.6711 -2.4952 23 6 5.2068 -2.8842 -1.0117 24 7 5.7064 -2.4005 0.1059 25 14 6.1111 -4.2354 -1.9313 26 1 7.1220 -3.6287 -2.8342 27 1 6.7894 -5.1283 -0.9577 28 1 5.1408 -5.0234 -2.7330 29 6 2.0760 -0.7892 -1.2085 30 1 -0.3633 0.5246 -0.8837 31 1 -0.3633 -1.0277 -0.0125 32 1 -0.3634 0.5029 0.8962 33 1 2.5902 1.6845 0.7395 34 1 3.9427 6.1148 0.1582 35 1 2.8154 6.6183 -2.1448 36 1 2.2861 2.5229 -3.8271 37 1 0.9781 2.2443 -5.8918 38 1 -0.7243 3.9097 -6.5088 39 1 -1.1344 5.8567 -5.0619 40 1 0.1565 6.1471 -2.9882 41 1 2.1886 -0.1513 2.0859 42 1 1.4515 -1.6545 1.4367 43 1 3.8032 -2.1376 1.2122 44 1 4.1969 -0.4430 0.7941 45 1 6.5444 -2.7456 0.4517 46 1 1.3141 -1.4754 -1.5780 47 1 2.3686 -0.0994 -2.0001 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001046760768.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:43:40 Heat of formation + Delta-G solvation = 44.528221 kcal Electronic energy + Delta-G solvation = -29740.977947 eV Core-core repulsion = 25889.141064 eV Total energy + Delta-G solvation = -3851.836883 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.34198 -40.83862 -39.60249 -38.67440 -35.77090 -33.92687 -33.31335 -31.97830 -31.70437 -30.69611 -30.36875 -29.33025 -27.59259 -25.54888 -24.48719 -23.35341 -23.15521 -22.30893 -21.65434 -20.45066 -20.28785 -19.84817 -18.82905 -17.50804 -17.08613 -16.78747 -16.70478 -16.27476 -15.89939 -15.70802 -15.56249 -15.26077 -14.83804 -14.73358 -14.38670 -14.28345 -14.12889 -14.07157 -13.77667 -13.64216 -13.57136 -13.33287 -13.14018 -13.10437 -12.92417 -12.75581 -12.19853 -12.06797 -11.98358 -11.97970 -11.87331 -11.76817 -11.65773 -10.85976 -10.71743 -10.25415 -10.08684 -9.69330 -9.39028 -8.92334 -8.88036 -7.93328 -5.26338 0.11961 0.62997 0.80483 1.42170 1.42783 1.53107 1.84544 2.07559 2.24494 2.40538 2.45790 3.03972 3.25972 3.54273 3.66443 3.90359 3.97160 4.01412 4.12455 4.13543 4.19426 4.33343 4.34972 4.45206 4.58761 4.62896 4.69182 4.75841 4.79739 4.80691 4.83367 4.88817 4.99538 5.05522 5.17356 5.23271 5.27712 5.31286 5.38967 5.54635 5.58123 5.60624 5.69436 5.69554 5.74241 5.81802 5.94121 6.16663 6.21118 6.49797 6.64343 7.05604 7.25108 7.71841 8.38025 9.18338 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.011945 B = 0.003419 C = 0.003187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2343.564792 B = 8186.925043 C = 8782.209852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.175 3.825 3 N -0.704 5.704 4 C 0.580 3.420 5 O -0.546 6.546 6 C -0.069 4.069 7 N -0.527 5.527 8 H 0.430 0.570 9 C 0.049 3.951 10 C -0.214 4.214 11 C -0.065 4.065 12 C -0.031 4.031 13 C -0.087 4.087 14 C -0.140 4.140 15 C -0.124 4.124 16 C -0.127 4.127 17 C -0.111 4.111 18 C -0.128 4.128 19 C 0.180 3.820 20 N -0.621 5.621 21 C -0.249 4.249 22 H 0.067 0.933 23 C -0.056 4.056 24 N -0.942 5.942 25 Si 0.974 3.026 26 H -0.288 1.288 27 H -0.286 1.286 28 H -0.273 1.273 29 C 0.137 3.863 30 H 0.055 0.945 31 H 0.070 0.930 32 H 0.077 0.923 33 H 0.402 0.598 34 H 0.218 0.782 35 H 0.163 0.837 36 H 0.085 0.915 37 H 0.120 0.880 38 H 0.143 0.857 39 H 0.152 0.848 40 H 0.140 0.860 41 H 0.103 0.897 42 H 0.088 0.912 43 H 0.038 0.962 44 H 0.002 0.998 45 H 0.250 0.750 46 H 0.022 0.978 47 H 0.006 0.994 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.985 19.658 1.689 22.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.088 3.912 3 N -0.356 5.356 4 C 0.368 3.632 5 O -0.423 6.423 6 C -0.182 4.182 7 N -0.124 5.124 8 H 0.270 0.730 9 C -0.087 4.087 10 C -0.237 4.237 11 C -0.074 4.074 12 C -0.032 4.032 13 C -0.105 4.105 14 C -0.159 4.159 15 C -0.142 4.142 16 C -0.145 4.145 17 C -0.129 4.129 18 C -0.166 4.166 19 C 0.055 3.945 20 N -0.348 5.348 21 C -0.378 4.378 22 H 0.085 0.915 23 C -0.249 4.249 24 N -0.590 5.590 25 Si 0.802 3.198 26 H -0.215 1.215 27 H -0.212 1.212 28 H -0.198 1.198 29 C 0.011 3.989 30 H 0.074 0.926 31 H 0.089 0.911 32 H 0.096 0.904 33 H 0.238 0.762 34 H 0.235 0.765 35 H 0.180 0.820 36 H 0.103 0.897 37 H 0.138 0.862 38 H 0.161 0.839 39 H 0.169 0.831 40 H 0.157 0.843 41 H 0.122 0.878 42 H 0.107 0.893 43 H 0.056 0.944 44 H 0.020 0.980 45 H 0.059 0.941 46 H 0.040 0.960 47 H 0.024 0.976 Dipole moment (debyes) X Y Z Total from point charges -10.263 19.114 1.196 21.728 hybrid contribution 1.468 -1.316 0.012 1.972 sum -8.795 17.798 1.209 19.889 Atomic orbital electron populations 1.21942 0.92090 1.02851 1.02848 1.21123 0.94257 0.80395 0.95396 1.45757 1.54284 1.12134 1.23399 1.17269 0.79977 0.83709 0.82202 1.90830 1.39900 1.76073 1.35545 1.20335 1.08324 0.94238 0.95329 1.42004 1.39476 1.12302 1.18602 0.73006 1.22630 1.02452 0.85830 0.97772 1.21171 1.04993 0.99003 0.98506 1.18870 1.01049 0.94048 0.93457 1.18316 0.96721 0.95360 0.92792 1.21027 0.99108 0.95965 0.94425 1.21210 0.97486 1.00038 0.97119 1.21439 0.97676 0.94405 1.00657 1.21365 1.00191 0.98527 0.94435 1.21373 0.95186 0.98780 0.97554 1.23218 0.97224 1.00026 0.96137 1.21224 0.92345 0.97257 0.83673 1.44763 1.31291 1.50842 1.07870 1.19314 1.00427 1.19386 0.98667 0.91548 1.25552 0.97504 1.02694 0.99192 1.70112 1.20636 1.44850 1.23440 0.85144 0.78257 0.78916 0.77483 1.21522 1.21170 1.19771 1.21658 0.89138 0.92600 0.95526 0.92612 0.91072 0.90360 0.76246 0.76518 0.81966 0.89678 0.86236 0.83899 0.83078 0.84259 0.87832 0.89327 0.94365 0.97990 0.94116 0.95981 0.97553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.19 8.45 71.98 0.61 -3.58 16 2 C 0.17 6.10 0.81 4.79 0.00 6.11 16 3 N -0.70 -22.05 5.14 -421.71 -2.17 -24.22 16 4 C 0.58 20.07 6.98 86.37 0.60 20.67 16 5 O -0.55 -22.32 10.33 -4.44 -0.05 -22.36 16 6 C -0.07 -1.99 7.07 40.57 0.29 -1.70 16 7 N -0.53 -10.26 5.98 -183.12 -1.10 -11.36 16 8 H 0.43 5.98 8.18 -92.71 -0.76 5.22 16 9 C 0.05 0.76 11.86 83.39 0.99 1.75 16 10 C -0.21 -4.39 10.73 22.21 0.24 -4.15 16 11 C -0.06 -1.86 5.67 -19.77 -0.11 -1.97 16 12 C -0.03 -0.96 5.27 -20.05 -0.11 -1.06 16 13 C -0.09 -3.00 7.63 22.50 0.17 -2.83 16 14 C -0.14 -4.21 10.03 22.23 0.22 -3.99 16 15 C -0.12 -2.96 10.04 22.32 0.22 -2.73 16 16 C -0.13 -2.77 10.03 22.24 0.22 -2.55 16 17 C -0.11 -2.73 9.74 22.50 0.22 -2.51 16 18 C -0.13 -4.28 6.09 31.99 0.19 -4.08 16 19 C 0.18 8.52 5.40 86.86 0.47 8.99 16 20 N -0.62 -33.25 3.39 -691.99 -2.35 -35.60 16 21 C -0.25 -14.70 10.24 84.03 0.86 -13.84 16 22 H 0.07 3.91 7.85 -2.91 -0.02 3.89 16 23 C -0.06 -3.22 5.40 84.86 0.46 -2.76 16 24 N -0.94 -56.12 10.68 21.65 0.23 -55.88 16 25 Si 0.97 46.78 29.56 68.60 2.03 48.80 16 26 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 27 H -0.29 -13.44 7.11 99.48 0.71 -12.73 16 28 H -0.27 -12.65 7.11 99.48 0.71 -11.95 16 29 C 0.14 6.37 6.13 86.73 0.53 6.90 16 30 H 0.05 1.91 6.37 -2.39 -0.02 1.90 16 31 H 0.07 2.04 8.12 -2.38 -0.02 2.02 16 32 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 33 H 0.40 10.17 7.59 -92.71 -0.70 9.47 16 34 H 0.22 1.24 8.06 -2.91 -0.02 1.22 16 35 H 0.16 2.58 8.06 -2.91 -0.02 2.56 16 36 H 0.08 3.46 7.35 -2.91 -0.02 3.44 16 37 H 0.12 3.36 8.06 -2.91 -0.02 3.33 16 38 H 0.14 2.54 8.06 -2.91 -0.02 2.51 16 39 H 0.15 2.20 8.06 -2.91 -0.02 2.18 16 40 H 0.14 2.72 8.06 -2.91 -0.02 2.69 16 41 H 0.10 2.66 8.04 -2.39 -0.02 2.64 16 42 H 0.09 2.84 8.05 -2.39 -0.02 2.82 16 43 H 0.04 2.04 6.93 -2.39 -0.02 2.02 16 44 H 0.00 0.11 8.07 -2.39 -0.02 0.09 16 45 H 0.25 14.36 8.31 -92.71 -0.77 13.59 16 46 H 0.02 1.05 7.80 -2.39 -0.02 1.03 16 47 H 0.01 0.34 6.47 -2.39 -0.02 0.32 16 Total: -1.00 -79.05 379.62 2.23 -76.82 By element: Atomic # 1 Polarization: 27.61 SS G_CDS: -0.46 Total: 27.15 kcal Atomic # 6 Polarization: -9.43 SS G_CDS: 6.09 Total: -3.34 kcal Atomic # 7 Polarization: -121.68 SS G_CDS: -5.38 Total: -127.06 kcal Atomic # 8 Polarization: -22.32 SS G_CDS: -0.05 Total: -22.36 kcal Atomic # 14 Polarization: 46.78 SS G_CDS: 2.03 Total: 48.80 kcal Total: -79.05 2.23 -76.82 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046760768.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.346 kcal (2) G-P(sol) polarization free energy of solvation -79.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.818 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds