Wall clock time and date at job start Tue Mar 31 2020 22:43:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46502 * 110.91392 * 2 1 4 4 C 1.34778 * 119.99873 * 62.45132 * 3 2 1 5 5 O 1.21726 * 120.00170 * 359.97438 * 4 3 2 6 6 C 1.46396 * 119.99707 * 180.02562 * 4 3 2 7 7 N 1.37631 * 126.33169 * 359.68697 * 6 4 3 8 8 H 0.97001 * 125.54680 * 0.02562 * 7 6 4 9 9 C 1.35644 * 108.89811 * 179.88703 * 7 6 4 10 10 C 1.35114 * 109.22379 * 0.38496 * 9 7 6 11 11 C 1.39101 * 126.32407 * 179.97438 * 6 4 3 12 12 C 1.48179 * 126.63275 * 359.92964 * 11 6 4 13 13 C 1.39443 * 120.13080 * 309.71859 * 12 11 6 14 14 C 1.37998 * 119.86527 * 179.76671 * 13 12 11 15 15 C 1.38336 * 120.12719 * 0.49539 * 14 13 12 16 16 C 1.38338 * 120.27163 * 359.77689 * 15 14 13 17 17 C 1.37994 * 120.13012 * 359.96876 * 16 15 14 18 18 C 1.55448 * 111.11787 * 236.00911 * 2 1 3 19 19 C 1.54321 * 102.96961 * 206.45980 * 18 2 1 20 20 N 1.47026 * 107.26791 * 22.19024 * 19 18 2 21 21 C 1.36940 * 125.64258 * 181.03445 * 20 19 18 22 22 H 1.08003 * 119.99660 * 180.02562 * 21 20 19 23 23 C 1.38811 * 120.00559 * 0.02875 * 21 20 19 24 24 N 1.31617 * 119.99776 * 359.97438 * 23 21 20 25 25 Si 1.86801 * 120.00230 * 179.97438 * 23 21 20 26 26 H 1.48501 * 109.46531 * 60.00328 * 25 23 21 27 27 H 1.48502 * 109.47014 * 179.97438 * 25 23 21 28 28 H 1.48492 * 109.47009 * 300.00047 * 25 23 21 29 29 C 1.47419 * 108.70576 * 1.06162 * 20 19 18 30 30 H 1.09000 * 109.47194 * 297.54709 * 1 2 3 31 31 H 1.09001 * 109.47578 * 57.55154 * 1 2 3 32 32 H 1.09003 * 109.46933 * 177.54882 * 1 2 3 33 33 H 0.97001 * 120.00055 * 242.45381 * 3 2 1 34 34 H 1.08001 * 125.38500 * 180.14568 * 9 7 6 35 35 H 1.07998 * 126.10290 * 179.73420 * 10 9 7 36 36 H 1.07998 * 120.07003 * 0.02562 * 13 12 11 37 37 H 1.07994 * 119.93159 * 180.23018 * 14 13 12 38 38 H 1.08009 * 119.86380 * 179.76298 * 15 14 13 39 39 H 1.07999 * 119.93845 * 179.97438 * 16 15 14 40 40 H 1.08001 * 120.06505 * 180.02562 * 17 16 15 41 41 H 1.08998 * 110.70855 * 88.08785 * 18 2 1 42 42 H 1.08998 * 110.85957 * 324.90400 * 18 2 1 43 43 H 1.08998 * 109.88101 * 262.77542 * 19 18 2 44 44 H 1.09000 * 109.88483 * 141.60664 * 19 18 2 45 45 H 0.97004 * 120.00521 * 179.97438 * 24 23 21 46 46 H 1.09002 * 110.36926 * 94.70918 * 29 20 19 47 47 H 1.08995 * 110.36556 * 216.92202 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0530 1.3685 0.0000 4 6 1.7892 2.1907 1.0349 5 8 1.1161 1.7963 1.9693 6 6 2.3114 3.5584 1.0346 7 7 3.0860 4.1352 0.0541 8 1 3.3804 3.6997 -0.7612 9 6 3.3681 5.4128 0.4119 10 6 2.7996 5.6753 1.6092 11 6 2.1209 4.5133 2.0279 12 6 1.3524 4.3420 3.2833 13 6 0.0561 3.8296 3.2461 14 6 -0.6528 3.6679 4.4190 15 6 -0.0835 4.0226 5.6289 16 6 1.2000 4.5368 5.6716 17 6 1.9207 4.6982 4.5059 18 6 2.0901 -0.8107 -1.2023 19 6 3.4707 -1.2757 -0.6934 20 7 3.4280 -1.2429 0.7759 21 6 4.4639 -1.5649 1.6117 22 1 4.3314 -1.5089 2.6821 23 6 5.6841 -1.9633 1.0833 24 7 5.8454 -2.0320 -0.2211 25 14 7.0973 -2.4018 2.2235 26 1 6.6965 -3.5355 3.0950 27 1 8.2812 -2.7928 1.4168 28 1 7.4373 -1.2266 3.0650 29 6 2.0853 -0.8066 1.2002 30 1 -0.3633 0.4753 0.9111 31 1 -0.3634 0.5514 -0.8672 32 1 -0.3633 -1.0268 -0.0440 33 1 2.5890 1.6829 -0.7448 34 1 3.9575 6.1087 -0.1667 35 1 2.8555 6.6090 2.1492 36 1 -0.3907 3.5559 2.3018 37 1 -1.6555 3.2677 4.3918 38 1 -0.6437 3.8978 6.5439 39 1 1.6390 4.8123 6.6191 40 1 2.9228 5.0993 4.5405 41 1 2.1972 -0.1737 -2.0803 42 1 1.4525 -1.6665 -1.4240 43 1 4.2461 -0.6014 -1.0569 44 1 3.6693 -2.2913 -1.0359 45 1 6.6982 -2.3100 -0.5905 46 1 1.4520 -1.6704 1.4024 47 1 2.1542 -0.1725 2.0841 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001046760772.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:43:45 Heat of formation + Delta-G solvation = 66.161314 kcal Electronic energy + Delta-G solvation = -29917.074749 eV Core-core repulsion = 26066.175947 eV Total energy + Delta-G solvation = -3850.898802 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.31288 -39.40550 -38.57225 -37.08344 -34.01354 -32.57978 -31.88632 -30.69388 -30.32857 -29.56465 -28.74470 -28.24838 -25.66930 -23.94300 -23.22913 -22.32067 -22.01948 -20.68559 -20.30543 -19.21312 -19.06878 -18.63049 -16.83520 -16.46581 -15.64569 -15.49069 -15.12097 -14.79764 -14.61891 -14.48193 -14.01508 -13.86891 -13.55475 -13.46268 -13.27524 -13.13999 -12.89817 -12.72354 -12.65568 -12.13992 -12.04715 -11.93581 -11.79275 -11.66357 -10.98746 -10.90092 -10.86709 -10.84697 -10.43384 -10.38070 -10.11027 -10.02887 -9.64856 -9.48963 -9.20785 -8.69317 -8.61680 -8.57329 -8.41718 -7.86313 -6.79448 -5.70413 -3.01833 1.21933 1.70128 1.83577 2.76925 3.07651 3.41294 3.42599 3.45643 3.47673 3.66720 4.09994 4.52028 4.85275 4.92903 5.07913 5.12563 5.17997 5.21509 5.34477 5.36688 5.39436 5.47454 5.60306 5.69810 5.70629 5.74729 5.81009 5.97592 6.07906 6.10643 6.14061 6.23348 6.30151 6.32918 6.36751 6.50761 6.56543 6.66181 6.69112 6.74593 6.83971 6.86865 6.96327 7.12369 7.24215 7.34246 7.53093 7.54521 7.79485 7.87052 8.26531 8.54699 9.24481 9.84509 10.50265 11.41701 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010367 B = 0.003781 C = 0.003605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2700.190350 B = 7403.868455 C = 7765.060155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.159 3.841 3 N -0.702 5.702 4 C 0.587 3.413 5 O -0.515 6.515 6 C -0.028 4.028 7 N -0.536 5.536 8 H 0.418 0.582 9 C 0.018 3.982 10 C -0.197 4.197 11 C -0.052 4.052 12 C -0.011 4.011 13 C -0.063 4.063 14 C -0.126 4.126 15 C -0.123 4.123 16 C -0.130 4.130 17 C -0.106 4.106 18 C -0.147 4.147 19 C 0.178 3.822 20 N -0.602 5.602 21 C -0.220 4.220 22 H 0.076 0.924 23 C -0.010 4.010 24 N -0.926 5.926 25 Si 0.910 3.090 26 H -0.285 1.285 27 H -0.291 1.291 28 H -0.286 1.286 29 C 0.131 3.869 30 H 0.072 0.928 31 H 0.049 0.951 32 H 0.063 0.937 33 H 0.389 0.611 34 H 0.170 0.830 35 H 0.143 0.857 36 H 0.118 0.882 37 H 0.117 0.883 38 H 0.115 0.885 39 H 0.117 0.883 40 H 0.118 0.882 41 H 0.061 0.939 42 H 0.073 0.927 43 H 0.043 0.957 44 H 0.044 0.956 45 H 0.251 0.749 46 H 0.025 0.975 47 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.366 15.905 -0.405 18.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.072 3.928 3 N -0.352 5.352 4 C 0.373 3.627 5 O -0.390 6.390 6 C -0.142 4.142 7 N -0.132 5.132 8 H 0.256 0.744 9 C -0.117 4.117 10 C -0.221 4.221 11 C -0.061 4.061 12 C -0.012 4.012 13 C -0.081 4.081 14 C -0.144 4.144 15 C -0.141 4.141 16 C -0.148 4.148 17 C -0.124 4.124 18 C -0.185 4.185 19 C 0.054 3.946 20 N -0.328 5.328 21 C -0.348 4.348 22 H 0.093 0.907 23 C -0.205 4.205 24 N -0.575 5.575 25 Si 0.740 3.260 26 H -0.212 1.212 27 H -0.216 1.216 28 H -0.213 1.213 29 C 0.004 3.996 30 H 0.091 0.909 31 H 0.068 0.932 32 H 0.082 0.918 33 H 0.222 0.778 34 H 0.187 0.813 35 H 0.161 0.839 36 H 0.136 0.864 37 H 0.135 0.865 38 H 0.133 0.867 39 H 0.135 0.865 40 H 0.136 0.864 41 H 0.080 0.920 42 H 0.092 0.908 43 H 0.061 0.939 44 H 0.062 0.938 45 H 0.061 0.939 46 H 0.043 0.957 47 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -10.585 15.392 0.110 18.681 hybrid contribution 1.527 -0.370 -0.328 1.605 sum -9.058 15.022 -0.218 17.543 Atomic orbital electron populations 1.21982 0.94237 1.02041 1.02396 1.21530 0.92519 0.80375 0.98341 1.45707 1.54350 1.13106 1.22022 1.16863 0.80394 0.82715 0.82692 1.90834 1.38957 1.75059 1.34191 1.20665 1.05566 0.95009 0.93008 1.41991 1.40531 1.11717 1.18953 0.74431 1.21848 1.04818 0.86290 0.98713 1.20847 1.04824 0.99141 0.97300 1.18524 1.01053 0.92947 0.93558 1.18060 0.93199 0.99122 0.90823 1.21080 0.93343 0.95467 0.98235 1.20992 1.00028 1.00782 0.92562 1.21099 0.95656 0.99760 0.97625 1.20947 0.94950 1.01119 0.97767 1.21119 0.99436 1.00172 0.91661 1.23283 1.00593 0.98891 0.95766 1.21136 0.89825 0.99857 0.83827 1.44424 1.07830 1.78884 1.01712 1.19028 0.89366 1.37426 0.88977 0.90657 1.24740 0.97699 1.02074 0.96003 1.69933 1.24094 1.54235 1.09232 0.86220 0.81859 0.78335 0.79547 1.21153 1.21639 1.21276 1.21891 0.87466 0.94899 0.95322 0.90892 0.93225 0.91809 0.77794 0.81259 0.83948 0.86361 0.86497 0.86688 0.86483 0.86357 0.92013 0.90790 0.93872 0.93831 0.93896 0.95722 0.92422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.21 8.60 37.16 0.32 -1.89 16 2 C 0.16 2.77 0.83 -129.51 -0.11 2.66 16 3 N -0.70 -11.31 5.17 -46.85 -0.24 -11.55 16 4 C 0.59 10.07 7.15 -12.98 -0.09 9.97 16 5 O -0.51 -9.99 10.23 5.17 0.05 -9.94 16 6 C -0.03 -0.42 7.07 -81.66 -0.58 -1.00 16 7 N -0.54 -6.08 5.98 -9.24 -0.06 -6.13 16 8 H 0.42 3.71 8.18 -40.82 -0.33 3.38 16 9 C 0.02 0.18 11.86 -16.98 -0.20 -0.02 16 10 C -0.20 -2.33 10.73 -39.67 -0.43 -2.75 16 11 C -0.05 -0.77 5.67 -104.47 -0.59 -1.36 16 12 C -0.01 -0.17 5.27 -104.91 -0.55 -0.73 16 13 C -0.06 -0.95 7.63 -39.22 -0.30 -1.25 16 14 C -0.13 -1.69 10.03 -39.63 -0.40 -2.09 16 15 C -0.12 -1.55 10.04 -39.51 -0.40 -1.94 16 16 C -0.13 -1.65 10.03 -39.63 -0.40 -2.05 16 17 C -0.11 -1.48 9.74 -39.22 -0.38 -1.86 16 18 C -0.15 -2.55 6.00 -24.74 -0.15 -2.70 16 19 C 0.18 4.18 5.36 -3.06 -0.02 4.16 16 20 N -0.60 -15.50 3.39 -170.08 -0.58 -16.08 16 21 C -0.22 -6.29 10.28 -15.06 -0.15 -6.44 16 22 H 0.08 2.15 7.83 -52.48 -0.41 1.74 16 23 C -0.01 -0.28 5.49 -17.43 -0.10 -0.37 16 24 N -0.93 -27.02 10.31 55.49 0.57 -26.45 16 25 Si 0.91 22.64 29.55 -169.99 -5.02 17.62 16 26 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 27 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 28 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16 29 C 0.13 2.90 6.10 -2.53 -0.02 2.88 16 30 H 0.07 1.18 6.53 -51.93 -0.34 0.84 16 31 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.06 0.89 8.12 -51.93 -0.42 0.47 16 33 H 0.39 5.41 7.62 -40.82 -0.31 5.10 16 34 H 0.17 1.05 8.06 -52.49 -0.42 0.62 16 35 H 0.14 1.39 8.06 -52.49 -0.42 0.97 16 36 H 0.12 1.81 7.36 -52.49 -0.39 1.42 16 37 H 0.12 1.34 8.06 -52.49 -0.42 0.91 16 38 H 0.12 1.15 8.06 -52.48 -0.42 0.73 16 39 H 0.12 1.20 8.06 -52.49 -0.42 0.78 16 40 H 0.12 1.49 8.06 -52.49 -0.42 1.07 16 41 H 0.06 0.91 8.05 -51.93 -0.42 0.50 16 42 H 0.07 1.21 8.03 -51.93 -0.42 0.79 16 43 H 0.04 1.10 7.38 -51.93 -0.38 0.72 16 44 H 0.04 1.14 7.51 -51.93 -0.39 0.75 16 45 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 46 H 0.03 0.55 8.04 -51.93 -0.42 0.13 16 47 H 0.06 1.40 6.31 -51.93 -0.33 1.07 16 LS Contribution 379.60 15.07 5.72 5.72 Total: -1.00 -33.95 379.60 -10.74 -44.69 By element: Atomic # 1 Polarization: 15.56 SS G_CDS: -6.65 Total: 8.91 kcal Atomic # 6 Polarization: -2.25 SS G_CDS: -4.53 Total: -6.79 kcal Atomic # 7 Polarization: -59.90 SS G_CDS: -0.30 Total: -60.21 kcal Atomic # 8 Polarization: -9.99 SS G_CDS: 0.05 Total: -9.94 kcal Atomic # 14 Polarization: 22.64 SS G_CDS: -5.02 Total: 17.62 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -33.95 -10.74 -44.69 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046760772.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.848 kcal (2) G-P(sol) polarization free energy of solvation -33.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.687 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds