Wall clock time and date at job start Tue Mar 31 2020 22:26:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.39313 * 119.05486 * 2 1 4 4 C 1.38858 * 119.57145 * 179.70736 * 3 2 1 5 5 C 1.47905 * 121.11156 * 180.28954 * 4 3 2 6 6 O 1.21544 * 119.99857 * 174.00771 * 5 4 3 7 7 N 1.34779 * 119.99971 * 354.00558 * 5 4 3 8 8 C 1.46506 * 119.99827 * 180.02562 * 7 5 4 9 9 C 1.52998 * 110.63770 * 298.31005 * 8 7 5 10 10 C 1.55160 * 110.71601 * 174.97538 * 8 7 5 11 11 C 1.54909 * 101.57840 * 277.13410 * 10 8 7 12 12 N 1.47419 * 104.83591 * 322.99346 * 11 10 8 13 13 C 1.36941 * 125.64935 * 204.09423 * 12 11 10 14 14 H 1.08006 * 119.99880 * 166.75247 * 13 12 11 15 15 C 1.38806 * 120.00115 * 346.75566 * 13 12 11 16 16 N 1.31619 * 119.99827 * 351.04680 * 15 13 12 17 17 Si 1.86798 * 120.00254 * 171.05021 * 15 13 12 18 18 H 1.48504 * 109.46749 * 85.27761 * 17 15 13 19 19 H 1.48494 * 109.47110 * 205.28046 * 17 15 13 20 20 H 1.48498 * 109.47110 * 325.28040 * 17 15 13 21 21 C 1.47023 * 108.70129 * 24.12748 * 12 11 10 22 22 C 1.41830 * 117.77646 * 0.56966 * 4 3 2 23 23 C 1.40096 * 121.35900 * 179.66835 * 22 4 3 24 24 C 1.36256 * 119.63603 * 180.02562 * 23 22 4 25 25 C 1.39341 * 120.83522 * 0.02562 * 24 23 22 26 26 C 1.36061 * 121.05449 * 359.93372 * 25 24 23 27 27 C 1.40713 * 119.73984 * 0.08652 * 26 25 24 28 28 N 1.30966 * 119.05797 * 180.27417 * 2 1 3 29 29 H 1.09006 * 109.47071 * 269.72793 * 1 2 3 30 30 H 1.08993 * 109.47448 * 149.73023 * 1 2 3 31 31 H 1.09000 * 109.46968 * 29.72428 * 1 2 3 32 32 H 1.07996 * 120.21346 * 0.02562 * 3 2 1 33 33 H 0.96999 * 120.00056 * 0.02562 * 7 5 4 34 34 H 1.08996 * 109.47293 * 59.29808 * 9 8 7 35 35 H 1.08995 * 109.47030 * 179.30558 * 9 8 7 36 36 H 1.09010 * 109.47263 * 299.29910 * 9 8 7 37 37 H 1.08993 * 111.00378 * 35.20944 * 10 8 7 38 38 H 1.09003 * 110.99746 * 159.06456 * 10 8 7 39 39 H 1.09003 * 110.36696 * 204.15323 * 11 10 8 40 40 H 1.09002 * 110.36591 * 81.83466 * 11 10 8 41 41 H 0.97006 * 120.00225 * 180.02562 * 16 15 13 42 42 H 1.09000 * 109.88466 * 239.51797 * 21 12 11 43 43 H 1.09003 * 110.00776 * 118.43458 * 21 12 11 44 44 H 1.07994 * 120.18122 * 0.04899 * 23 22 4 45 45 H 1.08001 * 119.57961 * 180.02562 * 24 23 22 46 46 H 1.08006 * 119.47293 * 179.97438 * 25 24 23 47 47 H 1.08000 * 120.13447 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1836 1.2178 0.0000 4 6 3.5721 1.2303 0.0062 5 6 4.3249 2.5035 0.0128 6 8 5.5348 2.4935 0.1280 7 7 3.6691 3.6747 -0.1090 8 6 4.4149 4.9357 -0.1030 9 6 5.1520 5.1201 1.2250 10 6 3.4692 6.1339 -0.3814 11 6 3.3874 6.1126 -1.9282 12 7 4.7404 5.7317 -2.3725 13 6 5.2898 6.0187 -3.5936 14 1 6.3502 5.8895 -3.7525 15 6 4.4838 6.4757 -4.6272 16 7 3.1744 6.4667 -4.4939 17 14 5.2574 7.1035 -6.2073 18 1 5.5216 5.9601 -7.1173 19 1 4.3303 8.0575 -6.8673 20 1 6.5352 7.7919 -5.8934 21 6 5.4020 4.9920 -1.2878 22 6 4.2444 -0.0185 -0.0002 23 6 5.6433 -0.0934 -0.0016 24 6 6.2528 -1.3120 -0.0083 25 6 5.5023 -2.4859 -0.0144 26 6 4.1422 -2.4494 -0.0124 27 6 3.4772 -1.2094 -0.0060 28 7 2.1431 -1.1448 -0.0055 29 1 -0.3633 -0.0049 1.0277 30 1 -0.3634 -0.8875 -0.5180 31 1 -0.3633 0.8925 -0.5095 32 1 1.6317 2.1461 0.0004 33 1 2.7035 3.6827 -0.2006 34 1 5.8418 4.2898 1.3759 35 1 5.7094 6.0565 1.2042 36 1 4.4297 5.1453 2.0410 37 1 2.4882 5.9691 0.0640 38 1 3.9062 7.0672 -0.0261 39 1 3.1275 7.1007 -2.3080 40 1 2.6573 5.3740 -2.2593 41 1 2.6110 6.7857 -5.2163 42 1 6.3127 5.5102 -0.9874 43 1 5.6426 3.9815 -1.6182 44 1 6.2354 0.8098 0.0031 45 1 7.3314 -1.3686 -0.0089 46 1 6.0082 -3.4401 -0.0201 47 1 3.5751 -3.3686 -0.0168 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001046817666.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:26:10 Heat of formation + Delta-G solvation = 51.769329 kcal Electronic energy + Delta-G solvation = -29611.027783 eV Core-core repulsion = 25759.504898 eV Total energy + Delta-G solvation = -3851.522885 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.23396 -39.74147 -37.49001 -37.37825 -34.15987 -33.57088 -32.12960 -31.97933 -30.38462 -29.59726 -28.74532 -27.89039 -25.76392 -24.84120 -23.73944 -23.06018 -22.52713 -20.83022 -20.30326 -19.24343 -18.09361 -17.56251 -17.31921 -16.72978 -15.65238 -15.39293 -15.19751 -14.85142 -14.73261 -14.65570 -14.45934 -13.84681 -13.76260 -13.50064 -13.20899 -13.15560 -13.01426 -12.83869 -12.43951 -12.30030 -12.11880 -11.79945 -11.64846 -11.62365 -11.46821 -11.43190 -11.01284 -10.82079 -10.55955 -10.50425 -10.43422 -10.22338 -10.11083 -9.90495 -9.72420 -9.13454 -8.82287 -8.78692 -8.59553 -8.28694 -6.77964 -5.77210 -3.09528 0.03800 0.68786 1.68345 2.69225 3.09962 3.24518 3.39413 3.44751 3.46610 3.98869 4.04981 4.36789 4.47742 4.53215 4.64028 4.75575 4.96680 5.01679 5.11723 5.19816 5.27335 5.30861 5.38169 5.39782 5.42529 5.49689 5.59901 5.65857 5.67031 5.77335 5.90150 5.97828 6.03638 6.08228 6.14060 6.23403 6.25446 6.34532 6.40094 6.45813 6.52856 6.61989 6.78473 6.80668 7.05564 7.38395 7.49876 7.64912 7.74700 7.76740 8.23650 8.32063 9.18162 9.79830 10.47827 11.36650 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.011918 B = 0.003236 C = 0.003196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2348.866960 B = 8649.856775 C = 8757.811567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.154 3.846 3 C -0.137 4.137 4 C -0.060 4.060 5 C 0.563 3.437 6 O -0.522 6.522 7 N -0.695 5.695 8 C 0.159 3.841 9 C -0.150 4.150 10 C -0.148 4.148 11 C 0.175 3.825 12 N -0.602 5.602 13 C -0.227 4.227 14 H 0.074 0.926 15 C -0.006 4.006 16 N -0.919 5.919 17 Si 0.910 3.090 18 H -0.288 1.288 19 H -0.290 1.290 20 H -0.281 1.281 21 C 0.136 3.864 22 C -0.072 4.072 23 C -0.093 4.093 24 C -0.125 4.125 25 C -0.096 4.096 26 C -0.104 4.104 27 C 0.130 3.870 28 N -0.465 5.465 29 H 0.081 0.919 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.142 0.858 33 H 0.398 0.602 34 H 0.072 0.928 35 H 0.066 0.934 36 H 0.051 0.949 37 H 0.065 0.935 38 H 0.078 0.922 39 H 0.065 0.935 40 H 0.028 0.972 41 H 0.252 0.748 42 H 0.032 0.968 43 H 0.035 0.965 44 H 0.171 0.829 45 H 0.128 0.872 46 H 0.128 0.872 47 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.342 -12.768 13.693 19.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.001 3.999 3 C -0.158 4.158 4 C -0.071 4.071 5 C 0.349 3.651 6 O -0.400 6.400 7 N -0.345 5.345 8 C 0.074 3.926 9 C -0.208 4.208 10 C -0.187 4.187 11 C 0.049 3.951 12 N -0.328 5.328 13 C -0.356 4.356 14 H 0.092 0.908 15 C -0.202 4.202 16 N -0.566 5.566 17 Si 0.740 3.260 18 H -0.215 1.215 19 H -0.216 1.216 20 H -0.207 1.207 21 C 0.009 3.991 22 C -0.074 4.074 23 C -0.111 4.111 24 C -0.144 4.144 25 C -0.116 4.116 26 C -0.123 4.123 27 C 0.008 3.992 28 N -0.175 5.175 29 H 0.100 0.900 30 H 0.099 0.901 31 H 0.099 0.901 32 H 0.160 0.840 33 H 0.233 0.767 34 H 0.091 0.909 35 H 0.085 0.915 36 H 0.070 0.930 37 H 0.083 0.917 38 H 0.097 0.903 39 H 0.084 0.916 40 H 0.046 0.954 41 H 0.063 0.937 42 H 0.050 0.950 43 H 0.053 0.947 44 H 0.188 0.812 45 H 0.146 0.854 46 H 0.146 0.854 47 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -2.922 -13.487 13.555 19.343 hybrid contribution 0.221 1.003 -1.063 1.478 sum -2.702 -12.484 12.492 17.866 Atomic orbital electron populations 1.20801 0.88125 1.04068 1.03376 1.21389 0.97274 0.87644 0.93548 1.22261 0.93619 0.99836 1.00096 1.20479 0.93697 0.93675 0.99202 1.17913 0.87134 0.83069 0.76992 1.90556 1.13403 1.86375 1.49678 1.45910 1.10684 1.05358 1.72544 1.21409 0.93100 0.82355 0.95762 1.22041 1.00523 1.02940 0.95319 1.23356 0.97660 0.96351 1.01315 1.21358 0.87397 1.00298 0.85998 1.44453 1.13182 1.62874 1.12291 1.18994 0.92122 1.38027 0.86458 0.90786 1.24827 0.95391 1.02260 0.97752 1.69930 1.02145 1.51882 1.32664 0.86174 0.78136 0.78430 0.83256 1.21513 1.21589 1.20664 1.21615 0.93617 0.96140 0.87698 1.18670 0.95207 0.92012 1.01535 1.22115 0.93447 1.00574 0.94962 1.21084 1.00514 0.92269 1.00486 1.20970 0.93732 0.98824 0.98079 1.20722 0.94200 0.95952 1.01403 1.18826 0.88760 0.92976 0.98618 1.67613 1.08851 1.28822 1.12191 0.90041 0.90136 0.90101 0.84012 0.76650 0.90922 0.91511 0.93036 0.91678 0.90316 0.91630 0.95428 0.93749 0.95047 0.94677 0.81235 0.85441 0.85412 0.84805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.88 10.14 36.01 0.37 -0.51 16 2 C 0.15 1.86 6.78 -82.56 -0.56 1.30 16 3 C -0.14 -1.68 9.20 -38.95 -0.36 -2.04 16 4 C -0.06 -0.88 5.94 -104.34 -0.62 -1.50 16 5 C 0.56 9.18 6.97 -12.30 -0.09 9.09 16 6 O -0.52 -9.51 10.45 5.33 0.06 -9.45 16 7 N -0.69 -10.70 5.10 -46.82 -0.24 -10.94 16 8 C 0.16 2.71 0.81 -129.99 -0.11 2.60 16 9 C -0.15 -2.20 8.45 37.16 0.31 -1.89 16 10 C -0.15 -2.51 6.09 -24.58 -0.15 -2.66 16 11 C 0.17 3.99 5.36 -2.53 -0.01 3.98 16 12 N -0.60 -15.31 3.39 -170.08 -0.58 -15.89 16 13 C -0.23 -6.42 10.22 -15.06 -0.15 -6.57 16 14 H 0.07 2.06 7.84 -52.48 -0.41 1.64 16 15 C -0.01 -0.16 5.39 -17.43 -0.09 -0.25 16 16 N -0.92 -26.61 10.80 55.49 0.60 -26.01 16 17 Si 0.91 22.17 29.56 -169.99 -5.03 17.14 16 18 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 19 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 20 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 21 C 0.14 2.95 6.13 -3.07 -0.02 2.93 16 22 C -0.07 -1.09 5.76 -106.52 -0.61 -1.70 16 23 C -0.09 -1.35 9.25 -39.60 -0.37 -1.72 16 24 C -0.13 -1.47 9.96 -39.88 -0.40 -1.87 16 25 C -0.10 -1.01 9.94 -39.95 -0.40 -1.41 16 26 C -0.10 -1.24 9.98 -39.43 -0.39 -1.63 16 27 C 0.13 1.86 6.61 -84.87 -0.56 1.30 16 28 N -0.46 -6.44 10.19 -7.25 -0.07 -6.51 16 29 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 31 H 0.08 0.55 8.07 -51.93 -0.42 0.13 16 32 H 0.14 1.33 6.55 -52.49 -0.34 0.99 16 33 H 0.40 5.21 6.64 -40.82 -0.27 4.94 16 34 H 0.07 1.15 6.37 -51.93 -0.33 0.82 16 35 H 0.07 0.94 8.12 -51.93 -0.42 0.52 16 36 H 0.05 0.65 8.14 -51.92 -0.42 0.23 16 37 H 0.06 0.91 8.04 -51.93 -0.42 0.49 16 38 H 0.08 1.29 8.05 -51.93 -0.42 0.87 16 39 H 0.07 1.67 7.14 -51.93 -0.37 1.30 16 40 H 0.03 0.68 8.01 -51.93 -0.42 0.26 16 41 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 42 H 0.03 0.69 7.80 -51.93 -0.41 0.28 16 43 H 0.04 0.84 6.47 -51.93 -0.34 0.51 16 44 H 0.17 2.69 4.99 -52.49 -0.26 2.43 16 45 H 0.13 1.19 8.06 -52.49 -0.42 0.77 16 46 H 0.13 0.94 8.06 -52.48 -0.42 0.51 16 47 H 0.13 1.33 8.06 -52.49 -0.42 0.91 16 LS Contribution 374.82 15.07 5.65 5.65 Total: -1.00 -33.11 374.82 -10.32 -43.43 By element: Atomic # 1 Polarization: 11.63 SS G_CDS: -6.49 Total: 5.14 kcal Atomic # 6 Polarization: 1.66 SS G_CDS: -4.21 Total: -2.55 kcal Atomic # 7 Polarization: -59.06 SS G_CDS: -0.29 Total: -59.35 kcal Atomic # 8 Polarization: -9.51 SS G_CDS: 0.06 Total: -9.45 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.03 Total: 17.14 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -33.11 -10.32 -43.43 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046817666.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.199 kcal (2) G-P(sol) polarization free energy of solvation -33.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.429 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds