Wall clock time and date at job start Tue Mar 31 2020 22:26:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.39313 * 119.05486 * 2 1 4 4 C 1.38858 * 119.57145 * 179.70736 * 3 2 1 5 5 C 1.47905 * 121.11156 * 180.28954 * 4 3 2 6 6 O 1.21544 * 119.99857 * 174.00771 * 5 4 3 7 7 N 1.34779 * 119.99971 * 354.00558 * 5 4 3 8 8 C 1.46506 * 119.99827 * 180.02562 * 7 5 4 9 9 C 1.52998 * 110.63770 * 298.31005 * 8 7 5 10 10 C 1.55160 * 110.71601 * 174.97538 * 8 7 5 11 11 C 1.54909 * 101.57840 * 277.13410 * 10 8 7 12 12 N 1.47419 * 104.83591 * 322.99346 * 11 10 8 13 13 C 1.36941 * 125.64935 * 204.09423 * 12 11 10 14 14 H 1.08006 * 119.99880 * 166.75247 * 13 12 11 15 15 C 1.38806 * 120.00115 * 346.75566 * 13 12 11 16 16 N 1.31619 * 119.99827 * 351.04680 * 15 13 12 17 17 Si 1.86798 * 120.00254 * 171.05021 * 15 13 12 18 18 H 1.48504 * 109.46749 * 85.27761 * 17 15 13 19 19 H 1.48494 * 109.47110 * 205.28046 * 17 15 13 20 20 H 1.48498 * 109.47110 * 325.28040 * 17 15 13 21 21 C 1.47023 * 108.70129 * 24.12748 * 12 11 10 22 22 C 1.41830 * 117.77646 * 0.56966 * 4 3 2 23 23 C 1.40096 * 121.35900 * 179.66835 * 22 4 3 24 24 C 1.36256 * 119.63603 * 180.02562 * 23 22 4 25 25 C 1.39341 * 120.83522 * 0.02562 * 24 23 22 26 26 C 1.36061 * 121.05449 * 359.93372 * 25 24 23 27 27 C 1.40713 * 119.73984 * 0.08652 * 26 25 24 28 28 N 1.30966 * 119.05797 * 180.27417 * 2 1 3 29 29 H 1.09006 * 109.47071 * 269.72793 * 1 2 3 30 30 H 1.08993 * 109.47448 * 149.73023 * 1 2 3 31 31 H 1.09000 * 109.46968 * 29.72428 * 1 2 3 32 32 H 1.07996 * 120.21346 * 0.02562 * 3 2 1 33 33 H 0.96999 * 120.00056 * 0.02562 * 7 5 4 34 34 H 1.08996 * 109.47293 * 59.29808 * 9 8 7 35 35 H 1.08995 * 109.47030 * 179.30558 * 9 8 7 36 36 H 1.09010 * 109.47263 * 299.29910 * 9 8 7 37 37 H 1.08993 * 111.00378 * 35.20944 * 10 8 7 38 38 H 1.09003 * 110.99746 * 159.06456 * 10 8 7 39 39 H 1.09003 * 110.36696 * 204.15323 * 11 10 8 40 40 H 1.09002 * 110.36591 * 81.83466 * 11 10 8 41 41 H 0.97006 * 120.00225 * 180.02562 * 16 15 13 42 42 H 1.09000 * 109.88466 * 239.51797 * 21 12 11 43 43 H 1.09003 * 110.00776 * 118.43458 * 21 12 11 44 44 H 1.07994 * 120.18122 * 0.04899 * 23 22 4 45 45 H 1.08001 * 119.57961 * 180.02562 * 24 23 22 46 46 H 1.08006 * 119.47293 * 179.97438 * 25 24 23 47 47 H 1.08000 * 120.13447 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1836 1.2178 0.0000 4 6 3.5721 1.2303 0.0062 5 6 4.3249 2.5035 0.0128 6 8 5.5348 2.4935 0.1280 7 7 3.6691 3.6747 -0.1090 8 6 4.4149 4.9357 -0.1030 9 6 5.1520 5.1201 1.2250 10 6 3.4692 6.1339 -0.3814 11 6 3.3874 6.1126 -1.9282 12 7 4.7404 5.7317 -2.3725 13 6 5.2898 6.0187 -3.5936 14 1 6.3502 5.8895 -3.7525 15 6 4.4838 6.4757 -4.6272 16 7 3.1744 6.4667 -4.4939 17 14 5.2574 7.1035 -6.2073 18 1 5.5216 5.9601 -7.1173 19 1 4.3303 8.0575 -6.8673 20 1 6.5352 7.7919 -5.8934 21 6 5.4020 4.9920 -1.2878 22 6 4.2444 -0.0185 -0.0002 23 6 5.6433 -0.0934 -0.0016 24 6 6.2528 -1.3120 -0.0083 25 6 5.5023 -2.4859 -0.0144 26 6 4.1422 -2.4494 -0.0124 27 6 3.4772 -1.2094 -0.0060 28 7 2.1431 -1.1448 -0.0055 29 1 -0.3633 -0.0049 1.0277 30 1 -0.3634 -0.8875 -0.5180 31 1 -0.3633 0.8925 -0.5095 32 1 1.6317 2.1461 0.0004 33 1 2.7035 3.6827 -0.2006 34 1 5.8418 4.2898 1.3759 35 1 5.7094 6.0565 1.2042 36 1 4.4297 5.1453 2.0410 37 1 2.4882 5.9691 0.0640 38 1 3.9062 7.0672 -0.0261 39 1 3.1275 7.1007 -2.3080 40 1 2.6573 5.3740 -2.2593 41 1 2.6110 6.7857 -5.2163 42 1 6.3127 5.5102 -0.9874 43 1 5.6426 3.9815 -1.6182 44 1 6.2354 0.8098 0.0031 45 1 7.3314 -1.3686 -0.0089 46 1 6.0082 -3.4401 -0.0201 47 1 3.5751 -3.3686 -0.0168 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001046817666.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:26:09 Heat of formation + Delta-G solvation = 31.162850 kcal Electronic energy + Delta-G solvation = -29611.921347 eV Core-core repulsion = 25759.504898 eV Total energy + Delta-G solvation = -3852.416449 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.28572 -41.01558 -38.93050 -38.37355 -35.81725 -34.70645 -33.63137 -32.98332 -31.87852 -30.77766 -30.35040 -28.71344 -27.58525 -25.99935 -25.27366 -24.18059 -23.47551 -22.42680 -21.72593 -20.64066 -19.09480 -18.98305 -18.42593 -18.26926 -17.08988 -16.75485 -16.41800 -16.36516 -15.93614 -15.74617 -15.68565 -15.45698 -15.04834 -14.63923 -14.32021 -14.22267 -14.08665 -14.04398 -13.90556 -13.58292 -13.31217 -13.14419 -13.09193 -12.92849 -12.73599 -12.57404 -12.34615 -12.30781 -12.17538 -12.05391 -11.96192 -11.78539 -11.66139 -11.54471 -11.19550 -10.70507 -10.29294 -10.16004 -9.72435 -9.27740 -8.84641 -7.92279 -5.26543 -0.97530 -0.26523 0.66028 1.43374 1.44379 1.53563 1.67503 1.91201 2.10889 2.46763 3.04380 3.14189 3.27097 3.32509 3.51275 3.65168 3.66696 3.68895 3.83250 3.97798 4.12354 4.13786 4.17560 4.36640 4.41453 4.45629 4.60195 4.65575 4.67426 4.74685 4.81563 4.83856 4.86527 4.90164 5.01124 5.02724 5.06872 5.10594 5.21023 5.31711 5.36399 5.39993 5.47364 5.52778 5.57095 5.62880 5.71596 5.87944 6.18580 6.43450 6.79329 7.05983 7.10645 7.73216 8.39940 9.19566 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.011918 B = 0.003236 C = 0.003196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2348.866960 B = 8649.856775 C = 8757.811567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.146 3.854 3 C -0.126 4.126 4 C -0.087 4.087 5 C 0.560 3.440 6 O -0.548 6.548 7 N -0.690 5.690 8 C 0.170 3.830 9 C -0.141 4.141 10 C -0.127 4.127 11 C 0.179 3.821 12 N -0.621 5.621 13 C -0.251 4.251 14 H 0.067 0.933 15 C -0.054 4.054 16 N -0.941 5.941 17 Si 0.973 3.027 18 H -0.287 1.287 19 H -0.287 1.287 20 H -0.273 1.273 21 C 0.135 3.865 22 C -0.093 4.093 23 C -0.126 4.126 24 C -0.117 4.117 25 C -0.090 4.090 26 C -0.109 4.109 27 C 0.107 3.893 28 N -0.477 5.477 29 H 0.101 0.899 30 H 0.081 0.919 31 H 0.099 0.901 32 H 0.170 0.830 33 H 0.410 0.590 34 H 0.057 0.943 35 H 0.073 0.927 36 H 0.080 0.920 37 H 0.106 0.894 38 H 0.091 0.909 39 H 0.033 0.967 40 H 0.006 0.994 41 H 0.250 0.750 42 H 0.027 0.973 43 H 0.006 0.994 44 H 0.149 0.851 45 H 0.150 0.850 46 H 0.167 0.833 47 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.426 -13.563 14.900 20.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.007 4.007 3 C -0.147 4.147 4 C -0.098 4.098 5 C 0.348 3.652 6 O -0.427 6.427 7 N -0.342 5.342 8 C 0.084 3.916 9 C -0.199 4.199 10 C -0.165 4.165 11 C 0.054 3.946 12 N -0.348 5.348 13 C -0.380 4.380 14 H 0.085 0.915 15 C -0.248 4.248 16 N -0.588 5.588 17 Si 0.801 3.199 18 H -0.214 1.214 19 H -0.213 1.213 20 H -0.198 1.198 21 C 0.009 3.991 22 C -0.096 4.096 23 C -0.144 4.144 24 C -0.135 4.135 25 C -0.109 4.109 26 C -0.127 4.127 27 C -0.014 4.014 28 N -0.187 5.187 29 H 0.119 0.881 30 H 0.099 0.901 31 H 0.117 0.883 32 H 0.188 0.812 33 H 0.248 0.752 34 H 0.076 0.924 35 H 0.092 0.908 36 H 0.099 0.901 37 H 0.125 0.875 38 H 0.110 0.890 39 H 0.052 0.948 40 H 0.024 0.976 41 H 0.059 0.941 42 H 0.045 0.955 43 H 0.024 0.976 44 H 0.166 0.834 45 H 0.168 0.832 46 H 0.185 0.815 47 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -4.014 -14.291 14.786 20.951 hybrid contribution 0.585 1.163 -1.466 1.960 sum -3.429 -13.127 13.320 19.013 Atomic orbital electron populations 1.20920 0.85208 1.05018 1.04859 1.22047 0.99105 0.87074 0.92440 1.22613 0.92694 1.01312 0.98037 1.20457 0.94815 0.92854 1.01675 1.18208 0.86987 0.83742 0.76310 1.90551 1.14638 1.86838 1.50718 1.45804 1.11222 1.04665 1.72468 1.21245 0.92288 0.83131 0.94900 1.21966 1.00739 1.02686 0.94495 1.23229 0.99971 0.96829 0.96508 1.21216 0.85673 0.97598 0.90132 1.44748 1.14305 1.63417 1.12309 1.19284 0.92216 1.38365 0.88156 0.91527 1.25585 0.95943 1.02608 1.00682 1.70098 1.03064 1.52396 1.33284 0.85193 0.77597 0.77716 0.79386 1.21446 1.21250 1.19774 1.21691 0.94870 0.93862 0.88721 1.18883 0.95660 0.92692 1.02368 1.22023 0.93515 1.01023 0.97838 1.21421 1.01863 0.91800 0.98421 1.21356 0.93317 0.99839 0.96383 1.21073 0.95015 0.95839 1.00797 1.19189 0.89207 0.93564 0.99453 1.67694 1.08669 1.29704 1.12629 0.88105 0.90057 0.88281 0.81222 0.75227 0.92399 0.90765 0.90086 0.87534 0.89043 0.94823 0.97644 0.94094 0.95503 0.97599 0.83429 0.83202 0.81531 0.82842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.43 10.14 71.24 0.72 -0.71 16 2 C 0.15 3.32 6.78 42.95 0.29 3.61 16 3 C -0.13 -2.96 9.20 22.68 0.21 -2.75 16 4 C -0.09 -2.63 5.94 -19.68 -0.12 -2.75 16 5 C 0.56 18.70 6.97 86.80 0.61 19.31 16 6 O -0.55 -21.01 10.45 -3.85 -0.04 -21.05 16 7 N -0.69 -20.85 5.10 -420.33 -2.14 -22.99 16 8 C 0.17 5.66 0.81 4.79 0.00 5.66 16 9 C -0.14 -3.89 8.45 71.98 0.61 -3.29 16 10 C -0.13 -4.06 6.09 31.99 0.19 -3.86 16 11 C 0.18 8.27 5.36 86.86 0.47 8.73 16 12 N -0.62 -32.55 3.39 -692.00 -2.35 -34.90 16 13 C -0.25 -14.60 10.22 84.03 0.86 -13.74 16 14 H 0.07 3.84 7.84 -2.91 -0.02 3.82 16 15 C -0.05 -3.09 5.39 84.86 0.46 -2.64 16 16 N -0.94 -55.63 10.80 21.65 0.23 -55.40 16 17 Si 0.97 46.28 29.56 68.60 2.03 48.31 16 18 H -0.29 -13.57 7.11 99.48 0.71 -12.87 16 19 H -0.29 -13.39 7.11 99.48 0.71 -12.68 16 20 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 21 C 0.13 6.03 6.13 86.73 0.53 6.56 16 22 C -0.09 -2.92 5.76 -21.09 -0.12 -3.04 16 23 C -0.13 -3.82 9.25 22.26 0.21 -3.61 16 24 C -0.12 -2.70 9.96 22.07 0.22 -2.48 16 25 C -0.09 -1.71 9.94 22.03 0.22 -1.49 16 26 C -0.11 -2.45 9.98 22.37 0.22 -2.22 16 27 C 0.11 3.05 6.61 40.33 0.27 3.31 16 28 N -0.48 -12.82 10.19 -176.85 -1.80 -14.62 16 29 H 0.10 1.05 8.14 -2.38 -0.02 1.03 16 30 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 31 H 0.10 1.03 8.07 -2.39 -0.02 1.01 16 32 H 0.17 2.81 6.55 -2.91 -0.02 2.79 16 33 H 0.41 10.07 6.64 -92.71 -0.62 9.46 16 34 H 0.06 1.81 6.37 -2.39 -0.02 1.79 16 35 H 0.07 1.94 8.12 -2.39 -0.02 1.92 16 36 H 0.08 1.79 8.14 -2.38 -0.02 1.77 16 37 H 0.11 2.57 8.04 -2.39 -0.02 2.55 16 38 H 0.09 2.75 8.05 -2.39 -0.02 2.73 16 39 H 0.03 1.75 7.14 -2.39 -0.02 1.73 16 40 H 0.01 0.28 8.01 -2.39 -0.02 0.26 16 41 H 0.25 14.31 8.31 -92.70 -0.77 13.54 16 42 H 0.03 1.21 7.80 -2.39 -0.02 1.20 16 43 H 0.01 0.30 6.47 -2.39 -0.02 0.29 16 44 H 0.15 5.10 4.99 -2.91 -0.01 5.08 16 45 H 0.15 2.63 8.06 -2.91 -0.02 2.61 16 46 H 0.17 1.84 8.06 -2.91 -0.02 1.81 16 47 H 0.15 2.74 8.06 -2.91 -0.02 2.71 16 Total: -1.00 -76.29 374.82 2.16 -74.13 By element: Atomic # 1 Polarization: 21.52 SS G_CDS: 0.39 Total: 21.91 kcal Atomic # 6 Polarization: -1.23 SS G_CDS: 5.84 Total: 4.61 kcal Atomic # 7 Polarization: -121.84 SS G_CDS: -6.06 Total: -127.90 kcal Atomic # 8 Polarization: -21.01 SS G_CDS: -0.04 Total: -21.05 kcal Atomic # 14 Polarization: 46.28 SS G_CDS: 2.03 Total: 48.31 kcal Total: -76.29 2.16 -74.13 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046817666.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.292 kcal (2) G-P(sol) polarization free energy of solvation -76.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.129 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds