Wall clock time and date at job start Tue Mar 31 2020 22:43:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46502 * 110.91392 * 2 1 4 4 C 1.34778 * 119.99873 * 62.45132 * 3 2 1 5 5 O 1.21712 * 120.00171 * 359.97438 * 4 3 2 6 6 C 1.46587 * 119.99879 * 180.02562 * 4 3 2 7 7 C 1.38051 * 126.00456 * 179.68839 * 6 4 3 8 8 C 1.39368 * 107.44207 * 179.83871 * 7 6 4 9 9 C 1.37824 * 107.65070 * 0.42437 * 8 7 6 10 10 C 1.47809 * 125.82355 * 179.75468 * 9 8 7 11 11 C 1.39597 * 120.14617 * 179.69791 * 10 9 8 12 12 C 1.37949 * 119.84962 * 179.77344 * 11 10 9 13 13 C 1.38368 * 120.14504 * 0.50918 * 12 11 10 14 14 C 1.38357 * 120.29592 * 359.74203 * 13 12 11 15 15 C 1.37947 * 120.15157 * 0.02562 * 14 13 12 16 16 N 1.36410 * 108.35286 * 359.73523 * 9 8 7 17 17 H 0.97003 * 125.71448 * 179.97438 * 16 9 8 18 18 C 1.55448 * 111.11787 * 236.00911 * 2 1 3 19 19 C 1.54321 * 102.96961 * 206.45980 * 18 2 1 20 20 N 1.47026 * 107.26791 * 22.19024 * 19 18 2 21 21 C 1.36940 * 125.64258 * 181.03445 * 20 19 18 22 22 H 1.08003 * 119.99660 * 180.02562 * 21 20 19 23 23 C 1.38811 * 120.00559 * 0.02875 * 21 20 19 24 24 N 1.31617 * 119.99776 * 359.97438 * 23 21 20 25 25 Si 1.86801 * 120.00230 * 179.97438 * 23 21 20 26 26 H 1.48501 * 109.46764 * 0.02562 * 25 23 21 27 27 H 1.48504 * 109.46723 * 120.00066 * 25 23 21 28 28 H 1.48499 * 109.47140 * 239.99844 * 25 23 21 29 29 C 1.47419 * 108.70576 * 1.06162 * 20 19 18 30 30 H 1.09000 * 109.47194 * 297.54709 * 1 2 3 31 31 H 1.09001 * 109.47578 * 57.55154 * 1 2 3 32 32 H 1.09003 * 109.46933 * 177.54882 * 1 2 3 33 33 H 0.97001 * 120.00055 * 242.45381 * 3 2 1 34 34 H 1.08000 * 126.28052 * 359.97010 * 7 6 4 35 35 H 1.07990 * 126.17312 * 180.13278 * 8 7 6 36 36 H 1.07997 * 120.07133 * 0.02562 * 11 10 9 37 37 H 1.08001 * 119.92780 * 180.23433 * 12 11 10 38 38 H 1.07997 * 119.84978 * 179.76965 * 13 12 11 39 39 H 1.08001 * 119.92510 * 179.97438 * 14 13 12 40 40 H 1.08003 * 120.07985 * 179.97438 * 15 14 13 41 41 H 1.08998 * 110.70855 * 88.08785 * 18 2 1 42 42 H 1.08998 * 110.85957 * 324.90400 * 18 2 1 43 43 H 1.08998 * 109.88101 * 262.77542 * 19 18 2 44 44 H 1.09000 * 109.88483 * 141.60664 * 19 18 2 45 45 H 0.97004 * 120.00521 * 179.97438 * 24 23 21 46 46 H 1.09002 * 110.36926 * 94.70918 * 29 20 19 47 47 H 1.08995 * 110.36556 * 216.92202 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0530 1.3685 0.0000 4 6 1.7892 2.1907 1.0349 5 8 1.1162 1.7964 1.9692 6 6 2.3120 3.5601 1.0346 7 6 2.1141 4.5045 2.0219 8 6 2.7820 5.6637 1.6312 9 6 3.3693 5.4158 0.4092 10 6 4.1739 6.3764 -0.3747 11 6 4.7209 5.9960 -1.6014 12 6 5.4669 6.8989 -2.3302 13 6 5.6823 8.1759 -1.8428 14 6 5.1474 8.5577 -0.6253 15 6 4.3955 7.6662 0.1114 16 7 3.0817 4.1325 0.0469 17 1 3.3708 3.6965 -0.7700 18 6 2.0901 -0.8107 -1.2023 19 6 3.4707 -1.2757 -0.6934 20 7 3.4280 -1.2429 0.7759 21 6 4.4639 -1.5649 1.6117 22 1 4.3314 -1.5089 2.6821 23 6 5.6841 -1.9633 1.0833 24 7 5.8454 -2.0320 -0.2211 25 14 7.0973 -2.4018 2.2235 26 1 6.6619 -2.2444 3.6345 27 1 7.5061 -3.8096 1.9861 28 1 8.2469 -1.5007 1.9562 29 6 2.0853 -0.8066 1.2002 30 1 -0.3633 0.4753 0.9111 31 1 -0.3634 0.5514 -0.8672 32 1 -0.3633 -1.0268 -0.0440 33 1 2.5890 1.6829 -0.7448 34 1 1.5477 4.3692 2.9314 35 1 2.8269 6.5904 2.1837 36 1 4.5569 4.9983 -1.9809 37 1 5.8875 6.6071 -3.2812 38 1 6.2702 8.8778 -2.4156 39 1 5.3196 9.5558 -0.2504 40 1 3.9788 7.9653 1.0618 41 1 2.1972 -0.1737 -2.0803 42 1 1.4525 -1.6665 -1.4240 43 1 4.2461 -0.6014 -1.0569 44 1 3.6693 -2.2913 -1.0359 45 1 6.6982 -2.3100 -0.5905 46 1 1.4520 -1.6704 1.4024 47 1 2.1542 -0.1725 2.0841 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001046869925.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:43:52 Heat of formation + Delta-G solvation = 59.674805 kcal Electronic energy + Delta-G solvation = -29008.667894 eV Core-core repulsion = 25157.487817 eV Total energy + Delta-G solvation = -3851.180078 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.36623 -39.61393 -38.85915 -37.11628 -34.01451 -32.41765 -31.95880 -31.54115 -30.71034 -30.04467 -28.75851 -27.96202 -25.68139 -24.09837 -23.44320 -22.96191 -21.79065 -20.64650 -20.32440 -19.73859 -19.11238 -18.66449 -17.11584 -16.69566 -15.89202 -15.53964 -15.08791 -15.05511 -14.64340 -14.60942 -14.12852 -14.06321 -13.77979 -13.64893 -13.52972 -13.34348 -12.93751 -12.80527 -12.64749 -12.46531 -12.07789 -11.95215 -11.80210 -11.68069 -11.55509 -11.27331 -10.91394 -10.88973 -10.46843 -10.40206 -10.07069 -10.02823 -9.67612 -9.64919 -9.44773 -9.24418 -9.06907 -8.70348 -8.57711 -7.71477 -6.80431 -5.71432 -3.02959 0.61627 1.12326 1.78619 2.73021 2.91813 3.38490 3.40455 3.46573 3.49036 3.65104 3.67438 4.41039 4.51169 4.56494 4.67090 4.83302 4.90707 5.09747 5.13872 5.21836 5.26946 5.34516 5.38428 5.46572 5.59432 5.59844 5.69195 5.72795 5.92244 5.97306 6.02957 6.08257 6.12571 6.18339 6.22743 6.24589 6.31905 6.35730 6.49598 6.64753 6.66136 6.70819 6.82915 6.87736 7.09225 7.25404 7.52422 7.53792 7.78653 7.83251 8.25280 8.48865 9.23419 9.83425 10.49045 11.40779 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.009813 B = 0.003267 C = 0.002828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2852.687871 B = 8569.222098 C = 9898.337588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.157 3.843 3 N -0.701 5.701 4 C 0.590 3.410 5 O -0.526 6.526 6 C -0.027 4.027 7 C -0.112 4.112 8 C -0.183 4.183 9 C 0.073 3.927 10 C -0.014 4.014 11 C -0.121 4.121 12 C -0.111 4.111 13 C -0.124 4.124 14 C -0.114 4.114 15 C -0.101 4.101 16 N -0.529 5.529 17 H 0.415 0.585 18 C -0.147 4.147 19 C 0.178 3.822 20 N -0.603 5.603 21 C -0.219 4.219 22 H 0.077 0.923 23 C -0.011 4.011 24 N -0.925 5.925 25 Si 0.910 3.090 26 H -0.280 1.280 27 H -0.291 1.291 28 H -0.292 1.292 29 C 0.130 3.870 30 H 0.072 0.928 31 H 0.049 0.951 32 H 0.064 0.936 33 H 0.390 0.610 34 H 0.150 0.850 35 H 0.145 0.855 36 H 0.117 0.883 37 H 0.125 0.875 38 H 0.122 0.878 39 H 0.126 0.874 40 H 0.130 0.870 41 H 0.061 0.939 42 H 0.074 0.926 43 H 0.043 0.957 44 H 0.044 0.956 45 H 0.250 0.750 46 H 0.027 0.973 47 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.789 19.512 -5.727 21.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.071 3.929 3 N -0.350 5.350 4 C 0.377 3.623 5 O -0.402 6.402 6 C -0.142 4.142 7 C -0.138 4.138 8 C -0.207 4.207 9 C -0.043 4.043 10 C -0.015 4.015 11 C -0.139 4.139 12 C -0.129 4.129 13 C -0.142 4.142 14 C -0.132 4.132 15 C -0.120 4.120 16 N -0.124 5.124 17 H 0.253 0.747 18 C -0.185 4.185 19 C 0.053 3.947 20 N -0.329 5.329 21 C -0.347 4.347 22 H 0.095 0.905 23 C -0.206 4.206 24 N -0.574 5.574 25 Si 0.741 3.259 26 H -0.205 1.205 27 H -0.218 1.218 28 H -0.219 1.219 29 C 0.003 3.997 30 H 0.091 0.909 31 H 0.069 0.931 32 H 0.083 0.917 33 H 0.223 0.777 34 H 0.168 0.832 35 H 0.163 0.837 36 H 0.135 0.865 37 H 0.143 0.857 38 H 0.140 0.860 39 H 0.144 0.856 40 H 0.147 0.853 41 H 0.080 0.920 42 H 0.093 0.907 43 H 0.062 0.938 44 H 0.062 0.938 45 H 0.060 0.940 46 H 0.044 0.956 47 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -6.040 18.972 -5.183 20.574 hybrid contribution 1.434 -0.396 -0.352 1.529 sum -4.606 18.576 -5.535 19.923 Atomic orbital electron populations 1.21989 0.94163 1.02115 1.02461 1.21563 0.92596 0.80314 0.98444 1.45704 1.54189 1.13159 1.21997 1.16926 0.80090 0.82727 0.82604 1.90798 1.39419 1.75244 1.34752 1.20692 1.05081 0.95244 0.93173 1.21180 1.02032 0.91661 0.98891 1.21048 1.04062 0.99819 0.95785 1.19067 1.03813 0.84679 0.96757 1.18113 0.96968 0.92760 0.93685 1.21147 0.98669 0.99666 0.94467 1.21055 0.98354 0.93660 0.99878 1.21236 1.00108 0.96441 0.96403 1.21086 0.97620 0.99588 0.94921 1.21118 0.98692 0.92100 1.00106 1.42047 1.40693 1.10909 1.18788 0.74669 1.23289 1.00606 0.98910 0.95738 1.21144 0.89824 0.99907 0.83826 1.44443 1.07823 1.78875 1.01735 1.19126 0.89315 1.37260 0.89043 0.90490 1.24755 0.97740 1.02084 0.96030 1.69953 1.23928 1.54295 1.09232 0.86058 0.82392 0.77683 0.79800 1.20474 1.21780 1.21885 1.21904 0.87539 0.94957 0.95276 0.90911 0.93148 0.91699 0.77713 0.83182 0.83741 0.86450 0.85722 0.85953 0.85633 0.85251 0.91984 0.90705 0.93846 0.93764 0.93983 0.95560 0.92453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.26 8.60 37.16 0.32 -1.94 16 2 C 0.16 2.77 0.83 -129.51 -0.11 2.66 16 3 N -0.70 -11.49 5.17 -46.79 -0.24 -11.73 16 4 C 0.59 10.29 7.18 -12.89 -0.09 10.20 16 5 O -0.53 -10.58 13.67 5.18 0.07 -10.51 16 6 C -0.03 -0.41 7.04 -81.94 -0.58 -0.99 16 7 C -0.11 -1.58 10.60 -39.23 -0.42 -1.99 16 8 C -0.18 -2.21 10.22 -39.31 -0.40 -2.61 16 9 C 0.07 0.89 6.93 -82.07 -0.57 0.32 16 10 C -0.01 -0.15 5.87 -104.97 -0.62 -0.77 16 11 C -0.12 -1.20 9.70 -39.18 -0.38 -1.58 16 12 C -0.11 -0.97 10.03 -39.64 -0.40 -1.36 16 13 C -0.12 -0.98 10.04 -39.49 -0.40 -1.38 16 14 C -0.11 -0.91 10.03 -39.64 -0.40 -1.30 16 15 C -0.10 -0.93 9.57 -39.18 -0.37 -1.30 16 16 N -0.53 -6.64 5.90 -5.81 -0.03 -6.67 16 17 H 0.42 4.36 7.24 -40.82 -0.30 4.06 16 18 C -0.15 -2.56 6.00 -24.74 -0.15 -2.71 16 19 C 0.18 4.17 5.36 -3.06 -0.02 4.15 16 20 N -0.60 -15.47 3.39 -170.08 -0.58 -16.05 16 21 C -0.22 -6.25 10.28 -15.06 -0.15 -6.40 16 22 H 0.08 2.19 7.83 -52.48 -0.41 1.78 16 23 C -0.01 -0.30 5.49 -17.43 -0.10 -0.40 16 24 N -0.93 -26.99 10.31 55.49 0.57 -26.42 16 25 Si 0.91 22.60 29.55 -169.99 -5.02 17.57 16 26 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 27 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 28 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 29 C 0.13 2.87 6.10 -2.53 -0.02 2.86 16 30 H 0.07 1.21 6.53 -51.93 -0.34 0.87 16 31 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.06 0.91 8.12 -51.93 -0.42 0.49 16 33 H 0.39 5.54 7.60 -40.82 -0.31 5.23 16 34 H 0.15 2.02 8.06 -52.49 -0.42 1.59 16 35 H 0.14 1.35 7.25 -52.49 -0.38 0.97 16 36 H 0.12 1.02 7.14 -52.49 -0.37 0.65 16 37 H 0.12 0.84 8.06 -52.49 -0.42 0.42 16 38 H 0.12 0.70 8.06 -52.49 -0.42 0.27 16 39 H 0.13 0.70 8.06 -52.49 -0.42 0.28 16 40 H 0.13 0.97 6.98 -52.48 -0.37 0.60 16 41 H 0.06 0.92 8.05 -51.93 -0.42 0.50 16 42 H 0.07 1.22 8.03 -51.93 -0.42 0.80 16 43 H 0.04 1.11 7.38 -51.93 -0.38 0.72 16 44 H 0.04 1.16 7.51 -51.93 -0.39 0.77 16 45 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 46 H 0.03 0.58 8.04 -51.93 -0.42 0.17 16 47 H 0.06 1.38 6.31 -51.93 -0.33 1.05 16 LS Contribution 381.88 15.07 5.75 5.75 Total: -1.00 -33.67 381.88 -10.82 -44.49 By element: Atomic # 1 Polarization: 14.63 SS G_CDS: -6.50 Total: 8.12 kcal Atomic # 6 Polarization: 0.28 SS G_CDS: -4.84 Total: -4.56 kcal Atomic # 7 Polarization: -60.59 SS G_CDS: -0.28 Total: -60.87 kcal Atomic # 8 Polarization: -10.58 SS G_CDS: 0.07 Total: -10.51 kcal Atomic # 14 Polarization: 22.60 SS G_CDS: -5.02 Total: 17.57 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -33.67 -10.82 -44.49 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046869925.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.160 kcal (2) G-P(sol) polarization free energy of solvation -33.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.485 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds