Wall clock time and date at job start Tue Mar 31 2020 22:43:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46502 * 110.91392 * 2 1 4 4 C 1.34778 * 119.99873 * 62.45132 * 3 2 1 5 5 O 1.21712 * 120.00171 * 359.97438 * 4 3 2 6 6 C 1.46587 * 119.99879 * 180.02562 * 4 3 2 7 7 C 1.38051 * 126.00456 * 179.68839 * 6 4 3 8 8 C 1.39368 * 107.44207 * 179.83871 * 7 6 4 9 9 C 1.37824 * 107.65070 * 0.42437 * 8 7 6 10 10 C 1.47809 * 125.82355 * 179.75468 * 9 8 7 11 11 C 1.39597 * 120.14617 * 179.69791 * 10 9 8 12 12 C 1.37949 * 119.84962 * 179.77344 * 11 10 9 13 13 C 1.38368 * 120.14504 * 0.50918 * 12 11 10 14 14 C 1.38357 * 120.29592 * 359.74203 * 13 12 11 15 15 C 1.37947 * 120.15157 * 0.02562 * 14 13 12 16 16 N 1.36410 * 108.35286 * 359.73523 * 9 8 7 17 17 H 0.97003 * 125.71448 * 179.97438 * 16 9 8 18 18 C 1.55448 * 111.11787 * 236.00911 * 2 1 3 19 19 C 1.54321 * 102.96961 * 206.45980 * 18 2 1 20 20 N 1.47026 * 107.26791 * 22.19024 * 19 18 2 21 21 C 1.36940 * 125.64258 * 181.03445 * 20 19 18 22 22 H 1.08003 * 119.99660 * 180.02562 * 21 20 19 23 23 C 1.38811 * 120.00559 * 0.02875 * 21 20 19 24 24 N 1.31617 * 119.99776 * 359.97438 * 23 21 20 25 25 Si 1.86801 * 120.00230 * 179.97438 * 23 21 20 26 26 H 1.48501 * 109.46764 * 0.02562 * 25 23 21 27 27 H 1.48504 * 109.46723 * 120.00066 * 25 23 21 28 28 H 1.48499 * 109.47140 * 239.99844 * 25 23 21 29 29 C 1.47419 * 108.70576 * 1.06162 * 20 19 18 30 30 H 1.09000 * 109.47194 * 297.54709 * 1 2 3 31 31 H 1.09001 * 109.47578 * 57.55154 * 1 2 3 32 32 H 1.09003 * 109.46933 * 177.54882 * 1 2 3 33 33 H 0.97001 * 120.00055 * 242.45381 * 3 2 1 34 34 H 1.08000 * 126.28052 * 359.97010 * 7 6 4 35 35 H 1.07990 * 126.17312 * 180.13278 * 8 7 6 36 36 H 1.07997 * 120.07133 * 0.02562 * 11 10 9 37 37 H 1.08001 * 119.92780 * 180.23433 * 12 11 10 38 38 H 1.07997 * 119.84978 * 179.76965 * 13 12 11 39 39 H 1.08001 * 119.92510 * 179.97438 * 14 13 12 40 40 H 1.08003 * 120.07985 * 179.97438 * 15 14 13 41 41 H 1.08998 * 110.70855 * 88.08785 * 18 2 1 42 42 H 1.08998 * 110.85957 * 324.90400 * 18 2 1 43 43 H 1.08998 * 109.88101 * 262.77542 * 19 18 2 44 44 H 1.09000 * 109.88483 * 141.60664 * 19 18 2 45 45 H 0.97004 * 120.00521 * 179.97438 * 24 23 21 46 46 H 1.09002 * 110.36926 * 94.70918 * 29 20 19 47 47 H 1.08995 * 110.36556 * 216.92202 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0530 1.3685 0.0000 4 6 1.7892 2.1907 1.0349 5 8 1.1162 1.7964 1.9692 6 6 2.3120 3.5601 1.0346 7 6 2.1141 4.5045 2.0219 8 6 2.7820 5.6637 1.6312 9 6 3.3693 5.4158 0.4092 10 6 4.1739 6.3764 -0.3747 11 6 4.7209 5.9960 -1.6014 12 6 5.4669 6.8989 -2.3302 13 6 5.6823 8.1759 -1.8428 14 6 5.1474 8.5577 -0.6253 15 6 4.3955 7.6662 0.1114 16 7 3.0817 4.1325 0.0469 17 1 3.3708 3.6965 -0.7700 18 6 2.0901 -0.8107 -1.2023 19 6 3.4707 -1.2757 -0.6934 20 7 3.4280 -1.2429 0.7759 21 6 4.4639 -1.5649 1.6117 22 1 4.3314 -1.5089 2.6821 23 6 5.6841 -1.9633 1.0833 24 7 5.8454 -2.0320 -0.2211 25 14 7.0973 -2.4018 2.2235 26 1 6.6619 -2.2444 3.6345 27 1 7.5061 -3.8096 1.9861 28 1 8.2469 -1.5007 1.9562 29 6 2.0853 -0.8066 1.2002 30 1 -0.3633 0.4753 0.9111 31 1 -0.3634 0.5514 -0.8672 32 1 -0.3633 -1.0268 -0.0440 33 1 2.5890 1.6829 -0.7448 34 1 1.5477 4.3692 2.9314 35 1 2.8269 6.5904 2.1837 36 1 4.5569 4.9983 -1.9809 37 1 5.8875 6.6071 -3.2812 38 1 6.2702 8.8778 -2.4156 39 1 5.3196 9.5558 -0.2504 40 1 3.9788 7.9653 1.0618 41 1 2.1972 -0.1737 -2.0803 42 1 1.4525 -1.6665 -1.4240 43 1 4.2461 -0.6014 -1.0569 44 1 3.6693 -2.2913 -1.0359 45 1 6.6982 -2.3100 -0.5905 46 1 1.4520 -1.6704 1.4024 47 1 2.1542 -0.1725 2.0841 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001046869925.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:43:51 Heat of formation + Delta-G solvation = 39.275367 kcal Electronic energy + Delta-G solvation = -29009.552481 eV Core-core repulsion = 25157.487817 eV Total energy + Delta-G solvation = -3852.064664 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.40256 -40.93878 -39.64144 -38.67964 -35.75184 -33.87435 -32.96767 -32.52302 -31.79585 -31.41494 -30.42647 -28.95535 -27.54637 -25.59118 -24.69483 -23.67547 -22.85161 -22.11876 -21.64922 -20.77578 -20.51746 -19.84861 -18.83835 -17.79072 -17.13666 -16.69105 -16.67927 -16.33410 -15.81565 -15.69080 -15.64573 -15.29879 -15.06747 -14.86666 -14.55333 -14.31038 -14.19813 -13.93842 -13.63223 -13.62455 -13.57112 -13.42764 -13.39375 -13.11003 -12.87950 -12.78451 -12.23905 -12.16576 -12.06507 -12.00863 -11.90938 -11.74764 -11.61174 -10.88623 -10.74908 -10.45592 -10.11578 -10.05949 -9.89094 -8.90079 -8.65221 -7.89455 -5.22636 -0.20550 0.47643 0.74541 1.40786 1.41060 1.51830 1.80733 1.92564 2.11764 2.39575 2.45100 2.96995 3.28988 3.49388 3.59881 3.67095 3.86082 3.94237 4.00998 4.05503 4.14684 4.25786 4.28500 4.39475 4.55300 4.59600 4.59884 4.66083 4.73814 4.84598 4.86573 4.89915 5.01008 5.03169 5.05106 5.11876 5.13199 5.32226 5.39293 5.42345 5.51598 5.57997 5.60019 5.63596 5.72830 5.78598 5.84893 6.03567 6.16587 6.30066 6.55201 7.08727 7.17143 7.74170 8.38188 9.20430 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.009813 B = 0.003267 C = 0.002828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2852.687871 B = 8569.222098 C = 9898.337588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.167 3.833 3 N -0.698 5.698 4 C 0.587 3.413 5 O -0.561 6.561 6 C -0.061 4.061 7 C -0.117 4.117 8 C -0.190 4.190 9 C 0.087 3.913 10 C -0.041 4.041 11 C -0.134 4.134 12 C -0.123 4.123 13 C -0.121 4.121 14 C -0.118 4.118 15 C -0.105 4.105 16 N -0.523 5.523 17 H 0.422 0.578 18 C -0.128 4.128 19 C 0.185 3.815 20 N -0.620 5.620 21 C -0.240 4.240 22 H 0.067 0.933 23 C -0.058 4.058 24 N -0.944 5.944 25 Si 0.972 3.028 26 H -0.274 1.274 27 H -0.287 1.287 28 H -0.290 1.290 29 C 0.126 3.874 30 H 0.056 0.944 31 H 0.076 0.924 32 H 0.078 0.922 33 H 0.400 0.600 34 H 0.149 0.851 35 H 0.172 0.828 36 H 0.121 0.879 37 H 0.141 0.859 38 H 0.147 0.853 39 H 0.152 0.848 40 H 0.144 0.856 41 H 0.097 0.903 42 H 0.095 0.905 43 H 0.016 0.984 44 H 0.010 0.990 45 H 0.247 0.753 46 H 0.028 0.972 47 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.565 21.782 -6.972 23.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.081 3.919 3 N -0.348 5.348 4 C 0.376 3.624 5 O -0.441 6.441 6 C -0.175 4.175 7 C -0.144 4.144 8 C -0.214 4.214 9 C -0.031 4.031 10 C -0.042 4.042 11 C -0.152 4.152 12 C -0.140 4.140 13 C -0.139 4.139 14 C -0.135 4.135 15 C -0.124 4.124 16 N -0.120 5.120 17 H 0.262 0.738 18 C -0.166 4.166 19 C 0.061 3.939 20 N -0.346 5.346 21 C -0.369 4.369 22 H 0.085 0.915 23 C -0.252 4.252 24 N -0.594 5.594 25 Si 0.801 3.199 26 H -0.199 1.199 27 H -0.214 1.214 28 H -0.217 1.217 29 C 0.000 4.000 30 H 0.075 0.925 31 H 0.095 0.905 32 H 0.097 0.903 33 H 0.235 0.765 34 H 0.167 0.833 35 H 0.189 0.811 36 H 0.139 0.861 37 H 0.159 0.841 38 H 0.165 0.835 39 H 0.170 0.830 40 H 0.162 0.838 41 H 0.115 0.885 42 H 0.113 0.887 43 H 0.035 0.965 44 H 0.028 0.972 45 H 0.057 0.943 46 H 0.045 0.955 47 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -5.833 21.246 -6.453 22.958 hybrid contribution 1.450 -0.977 0.018 1.748 sum -4.383 20.269 -6.435 21.713 Atomic orbital electron populations 1.21916 0.91660 1.03337 1.02853 1.21445 0.94219 0.80323 0.95940 1.45649 1.54249 1.12564 1.22310 1.17232 0.79516 0.83561 0.82097 1.90766 1.41153 1.76191 1.35965 1.20398 1.07561 0.94644 0.94885 1.21384 1.01973 0.92346 0.98684 1.21353 1.03767 1.00215 0.96062 1.19476 1.02540 0.84406 0.96658 1.18217 0.98314 0.93318 0.94369 1.21345 0.99001 1.00328 0.94548 1.21344 0.98197 0.93942 1.00550 1.21635 0.99341 0.96473 0.96453 1.21449 0.96789 1.00550 0.94753 1.21401 0.98554 0.91598 1.00827 1.41996 1.40240 1.11110 1.18629 0.73829 1.23166 0.96911 1.00080 0.96491 1.20942 0.92828 0.97472 0.82695 1.44677 1.08492 1.78825 1.02628 1.19346 0.90714 1.37624 0.89254 0.91532 1.25492 0.99835 1.02299 0.97533 1.70141 1.24125 1.54668 1.10418 0.85107 0.79282 0.77255 0.78303 1.19889 1.21415 1.21673 1.22014 0.86340 0.95170 0.96502 0.92541 0.90496 0.90271 0.76471 0.83325 0.81063 0.86135 0.84089 0.83477 0.83004 0.83820 0.88489 0.88693 0.96542 0.97194 0.94335 0.95470 0.95052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.99 8.60 71.98 0.62 -3.37 16 2 C 0.17 5.79 0.83 5.10 0.00 5.80 16 3 N -0.70 -22.81 5.17 -420.16 -2.17 -24.98 16 4 C 0.59 20.98 7.18 86.42 0.62 21.60 16 5 O -0.56 -23.48 13.67 -4.39 -0.06 -23.54 16 6 C -0.06 -1.88 7.04 40.36 0.28 -1.59 16 7 C -0.12 -3.35 10.60 22.50 0.24 -3.11 16 8 C -0.19 -4.43 10.22 22.44 0.23 -4.20 16 9 C 0.09 2.03 6.93 40.87 0.28 2.31 16 10 C -0.04 -0.83 5.87 -20.09 -0.12 -0.94 16 11 C -0.13 -2.47 9.70 22.53 0.22 -2.25 16 12 C -0.12 -1.85 10.03 22.23 0.22 -1.63 16 13 C -0.12 -1.54 10.04 22.33 0.22 -1.32 16 14 C -0.12 -1.50 10.03 22.23 0.22 -1.28 16 15 C -0.11 -1.68 9.57 22.53 0.22 -1.47 16 16 N -0.52 -13.05 5.90 -172.30 -1.02 -14.07 16 17 H 0.42 8.79 7.24 -92.71 -0.67 8.12 16 18 C -0.13 -4.28 6.00 31.88 0.19 -4.08 16 19 C 0.19 8.84 5.36 86.73 0.47 9.31 16 20 N -0.62 -32.80 3.39 -692.01 -2.35 -35.15 16 21 C -0.24 -14.15 10.28 84.03 0.86 -13.28 16 22 H 0.07 3.94 7.83 -2.91 -0.02 3.92 16 23 C -0.06 -3.39 5.49 84.86 0.47 -2.92 16 24 N -0.94 -56.34 10.31 21.65 0.22 -56.11 16 25 Si 0.97 47.25 29.55 68.60 2.03 49.28 16 26 H -0.27 -12.94 7.11 99.48 0.71 -12.23 16 27 H -0.29 -13.75 7.11 99.48 0.71 -13.05 16 28 H -0.29 -13.93 7.11 99.48 0.71 -13.23 16 29 C 0.13 5.70 6.10 86.85 0.53 6.23 16 30 H 0.06 1.84 6.53 -2.39 -0.02 1.82 16 31 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 32 H 0.08 2.04 8.12 -2.39 -0.02 2.02 16 33 H 0.40 11.18 7.60 -92.71 -0.70 10.48 16 34 H 0.15 4.14 8.06 -2.91 -0.02 4.11 16 35 H 0.17 2.88 7.25 -2.92 -0.02 2.86 16 36 H 0.12 2.01 7.14 -2.91 -0.02 1.99 16 37 H 0.14 1.58 8.06 -2.91 -0.02 1.55 16 38 H 0.15 1.11 8.06 -2.91 -0.02 1.09 16 39 H 0.15 1.10 8.06 -2.91 -0.02 1.07 16 40 H 0.14 1.77 6.98 -2.91 -0.02 1.75 16 41 H 0.10 2.60 8.05 -2.39 -0.02 2.58 16 42 H 0.09 2.84 8.03 -2.39 -0.02 2.83 16 43 H 0.02 0.86 7.38 -2.39 -0.02 0.84 16 44 H 0.01 0.53 7.51 -2.39 -0.02 0.51 16 45 H 0.25 14.30 8.31 -92.70 -0.77 13.53 16 46 H 0.03 1.23 8.04 -2.39 -0.02 1.21 16 47 H 0.03 1.57 6.31 -2.39 -0.02 1.56 16 Total: -1.00 -75.72 381.88 2.07 -73.65 By element: Atomic # 1 Polarization: 27.49 SS G_CDS: -0.37 Total: 27.12 kcal Atomic # 6 Polarization: -1.99 SS G_CDS: 5.78 Total: 3.79 kcal Atomic # 7 Polarization: -124.99 SS G_CDS: -5.32 Total: -130.31 kcal Atomic # 8 Polarization: -23.48 SS G_CDS: -0.06 Total: -23.54 kcal Atomic # 14 Polarization: 47.25 SS G_CDS: 2.03 Total: 49.28 kcal Total: -75.72 2.07 -73.65 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046869925.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.929 kcal (2) G-P(sol) polarization free energy of solvation -75.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.654 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds