Wall clock time and date at job start Tue Mar 31 2020 22:14:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.35472 * 125.11098 * 2 1 4 4 H 0.96996 * 124.79229 * 359.96235 * 3 2 1 5 5 C 1.37963 * 110.42410 * 179.97438 * 3 2 1 6 6 C 1.39119 * 133.19087 * 179.97438 * 5 3 2 7 7 C 1.37770 * 119.93141 * 180.02562 * 6 5 3 8 8 C 1.38759 * 120.63369 * 0.02675 * 7 6 5 9 9 C 1.37756 * 120.29960 * 359.97438 * 8 7 6 10 10 C 1.39272 * 119.67199 * 359.97438 * 9 8 7 11 11 C 1.36366 * 125.11558 * 179.69866 * 2 1 3 12 12 C 1.46918 * 126.77045 * 0.02562 * 11 2 1 13 13 O 1.21672 * 119.99607 * 90.02876 * 12 11 2 14 14 N 1.34771 * 120.00303 * 270.02695 * 12 11 2 15 15 C 1.46748 * 125.32630 * 359.69317 * 14 12 11 16 16 C 1.54092 * 106.63254 * 161.58375 * 15 14 12 17 17 H 1.09003 * 113.49405 * 151.36568 * 16 15 14 18 18 C 1.53966 * 109.45096 * 278.63818 * 16 15 14 19 19 N 1.46776 * 106.62891 * 138.17418 * 18 16 15 20 20 C 1.36938 * 125.33595 * 161.51944 * 19 18 16 21 21 H 1.07997 * 119.99984 * 354.15680 * 20 19 18 22 22 C 1.38815 * 119.99789 * 174.14973 * 20 19 18 23 23 N 1.31623 * 119.99870 * 6.99448 * 22 20 19 24 24 Si 1.86795 * 120.00114 * 186.98697 * 22 20 19 25 25 H 1.48501 * 109.47007 * 94.98822 * 24 22 20 26 26 H 1.48496 * 109.47380 * 214.98992 * 24 22 20 27 27 H 1.48502 * 109.46983 * 334.99096 * 24 22 20 28 28 C 1.46663 * 109.32370 * 341.49053 * 19 18 16 29 29 C 1.53731 * 107.94543 * 0.54021 * 28 19 18 30 30 H 1.08999 * 113.06077 * 140.00175 * 29 28 19 31 31 C 1.46639 * 125.33266 * 179.97438 * 14 12 11 32 32 H 1.08994 * 109.47207 * 90.02125 * 1 2 3 33 33 H 1.09002 * 109.47014 * 330.01809 * 1 2 3 34 34 H 1.08999 * 109.46445 * 210.02321 * 1 2 3 35 35 H 1.07998 * 120.03852 * 359.97438 * 6 5 3 36 36 H 1.07993 * 119.68428 * 180.02562 * 7 6 5 37 37 H 1.07997 * 119.84981 * 180.02562 * 8 7 6 38 38 H 1.07995 * 120.16326 * 179.97438 * 9 8 7 39 39 H 1.08997 * 110.00855 * 281.01096 * 15 14 12 40 40 H 1.09003 * 110.00982 * 42.38168 * 15 14 12 41 41 H 1.09000 * 110.03021 * 257.47238 * 18 16 15 42 42 H 1.09009 * 110.02357 * 18.88710 * 18 16 15 43 43 H 0.96999 * 120.00046 * 179.97438 * 23 22 20 44 44 H 1.09005 * 109.77212 * 240.92164 * 28 19 18 45 45 H 1.08998 * 109.77736 * 120.16389 * 28 19 18 46 46 H 1.09001 * 109.75535 * 300.44311 * 31 14 12 47 47 H 1.08994 * 109.75804 * 61.15822 * 31 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2862 1.1082 0.0000 4 1 1.9530 2.0191 -0.0005 5 6 3.6208 0.7584 0.0006 6 6 4.7990 1.4982 0.0004 7 6 6.0161 0.8525 0.0006 8 6 6.0811 -0.5336 0.0005 9 6 4.9256 -1.2836 0.0006 10 6 3.6885 -0.6439 0.0015 11 6 2.2915 -1.1154 0.0059 12 6 1.8347 -2.5118 0.0127 13 8 1.6465 -3.0954 -1.0382 14 7 1.6242 -3.1463 1.1829 15 6 1.8197 -2.5593 2.5136 16 6 1.0354 -3.4413 3.5043 17 1 1.4577 -3.4472 4.5092 18 6 -0.4518 -3.0434 3.4786 19 7 -1.2214 -4.2928 3.5117 20 6 -2.5419 -4.4006 3.8579 21 1 -3.0757 -3.5372 4.2265 22 6 -3.1943 -5.6197 3.7349 23 7 -2.5141 -6.7011 3.4182 24 14 -5.0375 -5.7255 4.0189 25 1 -5.7458 -5.6170 2.7182 26 1 -5.3666 -7.0264 4.6548 27 1 -5.4655 -4.6169 4.9095 28 6 -0.3546 -5.4074 3.1151 29 6 1.0447 -4.8399 2.8266 30 1 1.8484 -5.4795 3.1914 31 6 1.1697 -4.5331 1.3259 32 1 -0.3633 -0.0004 -1.0276 33 1 -0.3633 0.8902 0.5136 34 1 -0.3632 -0.8898 0.5142 35 1 4.7597 2.5774 -0.0008 36 1 6.9282 1.4307 0.0008 37 1 7.0420 -1.0266 0.0011 38 1 4.9788 -2.3622 0.0001 39 1 2.8793 -2.5588 2.7690 40 1 1.4304 -1.5413 2.5330 41 1 -0.6905 -2.4347 4.3507 42 1 -0.6748 -2.4916 2.5654 43 1 -2.9699 -7.5531 3.3326 44 1 -0.7519 -5.8824 2.2180 45 1 -0.2975 -6.1360 3.9238 46 1 0.2002 -4.6548 0.8426 47 1 1.8953 -5.2074 0.8713 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001048928765.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:14:43 Heat of formation + Delta-G solvation = 55.078384 kcal Electronic energy + Delta-G solvation = -29777.007218 eV Core-core repulsion = 25925.627824 eV Total energy + Delta-G solvation = -3851.379393 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.64549 -39.91097 -37.93782 -37.20915 -34.88194 -32.56170 -32.02185 -31.23883 -30.26889 -29.66849 -29.37765 -27.19545 -25.56693 -25.44876 -23.47909 -22.50521 -21.79114 -21.22631 -20.14758 -19.33261 -18.67659 -17.91594 -16.89246 -16.67358 -16.32054 -15.63475 -15.40530 -15.06845 -14.84682 -14.71485 -14.16359 -14.07055 -13.83510 -13.64854 -13.18505 -13.10844 -12.95469 -12.80739 -12.58384 -12.40942 -12.04972 -11.77070 -11.68736 -11.65418 -11.62009 -11.39209 -11.13830 -10.90298 -10.81415 -10.35553 -10.10916 -9.98471 -9.96167 -9.80952 -9.66473 -9.62292 -8.59033 -8.38829 -8.27003 -7.82536 -6.82715 -5.73845 -3.06115 0.89874 1.42102 2.26849 2.71926 2.85829 3.39861 3.41758 3.45064 3.47090 3.73744 4.42630 4.48558 4.55802 4.67455 4.84854 4.89431 4.98479 5.08250 5.13216 5.27884 5.29639 5.34373 5.36828 5.48189 5.55214 5.58802 5.69459 5.70051 5.77333 5.81082 5.83417 5.88904 5.98237 6.20515 6.24670 6.32195 6.36805 6.41139 6.45212 6.54234 6.61439 6.66885 6.73262 6.85400 6.92913 7.24556 7.53134 7.59511 7.80749 7.82517 8.26102 8.45180 9.21503 9.82260 10.46867 11.38156 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.020452 B = 0.002923 C = 0.002783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1368.716021 B = 9575.508115 C =10057.370606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.132 3.868 3 N -0.582 5.582 4 H 0.417 0.583 5 C 0.092 3.908 6 C -0.126 4.126 7 C -0.103 4.103 8 C -0.141 4.141 9 C -0.072 4.072 10 C -0.069 4.069 11 C -0.213 4.213 12 C 0.606 3.394 13 O -0.540 6.540 14 N -0.599 5.599 15 C 0.118 3.882 16 C -0.111 4.111 17 H 0.098 0.902 18 C 0.147 3.853 19 N -0.602 5.602 20 C -0.230 4.230 21 H 0.078 0.922 22 C -0.006 4.006 23 N -0.919 5.919 24 Si 0.910 3.090 25 H -0.289 1.289 26 H -0.291 1.291 27 H -0.281 1.281 28 C 0.186 3.814 29 C -0.122 4.122 30 H 0.088 0.912 31 C 0.118 3.882 32 H 0.085 0.915 33 H 0.075 0.925 34 H 0.091 0.909 35 H 0.120 0.880 36 H 0.125 0.875 37 H 0.124 0.876 38 H 0.122 0.878 39 H 0.061 0.939 40 H 0.069 0.931 41 H 0.033 0.967 42 H 0.017 0.983 43 H 0.253 0.747 44 H 0.052 0.948 45 H 0.045 0.955 46 H 0.076 0.924 47 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.479 16.652 -4.369 23.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.021 3.979 3 N -0.184 5.184 4 H 0.254 0.746 5 C -0.013 4.013 6 C -0.147 4.147 7 C -0.122 4.122 8 C -0.160 4.160 9 C -0.091 4.091 10 C -0.074 4.074 11 C -0.223 4.223 12 C 0.393 3.607 13 O -0.417 6.417 14 N -0.332 5.332 15 C -0.006 4.006 16 C -0.130 4.130 17 H 0.116 0.884 18 C 0.020 3.980 19 N -0.328 5.328 20 C -0.358 4.358 21 H 0.095 0.905 22 C -0.202 4.202 23 N -0.566 5.566 24 Si 0.741 3.259 25 H -0.216 1.216 26 H -0.218 1.218 27 H -0.207 1.207 28 C 0.061 3.939 29 C -0.142 4.142 30 H 0.106 0.894 31 C -0.004 4.004 32 H 0.104 0.896 33 H 0.094 0.906 34 H 0.110 0.890 35 H 0.138 0.862 36 H 0.143 0.857 37 H 0.142 0.858 38 H 0.140 0.860 39 H 0.079 0.921 40 H 0.088 0.912 41 H 0.051 0.949 42 H 0.034 0.966 43 H 0.063 0.937 44 H 0.070 0.930 45 H 0.063 0.937 46 H 0.094 0.906 47 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 15.149 16.297 -4.990 22.804 hybrid contribution -1.078 0.368 0.182 1.153 sum 14.072 16.665 -4.808 22.335 Atomic orbital electron populations 1.20642 0.86735 1.04613 1.04035 1.20282 0.93436 0.84851 0.99366 1.41393 1.04127 1.08174 1.64724 0.74570 1.18143 0.84330 0.93827 1.05045 1.19996 0.89641 0.98857 1.06175 1.20773 0.96520 0.94520 1.00414 1.20896 0.97849 0.93795 1.03427 1.20514 0.90351 0.99807 0.98381 1.18750 0.91963 0.91708 1.04938 1.19634 0.91902 0.92226 1.18509 1.16851 0.76894 0.84629 0.82288 1.90803 1.52247 1.67630 1.31053 1.48218 1.65534 1.13981 1.05469 1.21871 0.99315 0.97374 0.82036 1.22974 0.97202 0.94897 0.97973 0.88425 1.21222 0.88403 0.90494 0.97862 1.44214 1.07761 1.01038 1.79800 1.19024 0.84205 0.95706 1.36900 0.90465 1.24813 0.98121 0.95627 1.01669 1.69964 1.33755 0.98556 1.54329 0.86129 0.85226 0.76983 0.77610 1.21615 1.21766 1.20679 1.21049 0.83344 0.89568 0.99902 1.23130 1.01644 0.96625 0.92778 0.89362 1.21984 1.00128 0.81212 0.97032 0.89613 0.90578 0.88981 0.86205 0.85709 0.85838 0.86043 0.92052 0.91233 0.94884 0.96570 0.93680 0.92979 0.93693 0.90563 0.92183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.07 10.20 36.01 0.37 -0.70 16 2 C 0.13 1.60 7.12 -81.66 -0.58 1.02 16 3 N -0.58 -5.64 5.99 -6.78 -0.04 -5.68 16 4 H 0.42 2.56 8.96 -40.82 -0.37 2.19 16 5 C 0.09 1.04 7.26 -83.97 -0.61 0.43 16 6 C -0.13 -1.16 10.07 -39.43 -0.40 -1.55 16 7 C -0.10 -0.90 10.01 -39.56 -0.40 -1.30 16 8 C -0.14 -1.39 10.03 -39.57 -0.40 -1.78 16 9 C -0.07 -0.89 10.09 -39.37 -0.40 -1.29 16 10 C -0.07 -0.94 6.36 -104.95 -0.67 -1.60 16 11 C -0.21 -3.16 4.96 -103.31 -0.51 -3.67 16 12 C 0.61 10.71 7.17 -12.75 -0.09 10.62 16 13 O -0.54 -11.52 17.42 5.21 0.09 -11.42 16 14 N -0.60 -10.02 3.30 -173.74 -0.57 -10.59 16 15 C 0.12 1.69 5.75 -3.34 -0.02 1.67 16 16 C -0.11 -1.80 4.16 -88.26 -0.37 -2.17 16 17 H 0.10 1.44 8.14 -51.93 -0.42 1.01 16 18 C 0.15 2.90 6.49 -3.39 -0.02 2.88 16 19 N -0.60 -14.92 3.38 -171.84 -0.58 -15.50 16 20 C -0.23 -6.30 10.24 -15.06 -0.15 -6.45 16 21 H 0.08 2.05 7.84 -52.49 -0.41 1.63 16 22 C -0.01 -0.16 5.48 -17.43 -0.10 -0.26 16 23 N -0.92 -26.61 10.30 55.49 0.57 -26.04 16 24 Si 0.91 21.93 29.56 -169.99 -5.02 16.91 16 25 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 26 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 27 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 28 C 0.19 4.36 4.78 -3.57 -0.02 4.35 16 29 C -0.12 -2.18 4.02 -88.60 -0.36 -2.54 16 30 H 0.09 1.40 8.14 -51.93 -0.42 0.98 16 31 C 0.12 2.14 6.21 -3.61 -0.02 2.12 16 32 H 0.09 0.85 8.14 -51.93 -0.42 0.42 16 33 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 34 H 0.09 1.17 7.84 -51.93 -0.41 0.76 16 35 H 0.12 0.78 8.06 -52.49 -0.42 0.36 16 36 H 0.12 0.76 8.06 -52.49 -0.42 0.33 16 37 H 0.12 0.94 8.06 -52.49 -0.42 0.51 16 38 H 0.12 1.49 8.06 -52.49 -0.42 1.06 16 39 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 40 H 0.07 0.95 7.63 -51.93 -0.40 0.55 16 41 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 42 H 0.02 0.33 7.72 -51.92 -0.40 -0.07 16 43 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 44 H 0.05 1.37 6.61 -51.93 -0.34 1.03 16 45 H 0.04 1.16 7.52 -51.93 -0.39 0.77 16 46 H 0.08 1.60 7.29 -51.93 -0.38 1.23 16 47 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 LS Contribution 380.62 15.07 5.74 5.74 Total: -1.00 -33.90 380.62 -11.44 -45.33 By element: Atomic # 1 Polarization: 8.36 SS G_CDS: -6.88 Total: 1.48 kcal Atomic # 6 Polarization: 4.51 SS G_CDS: -4.74 Total: -0.23 kcal Atomic # 7 Polarization: -57.18 SS G_CDS: -0.62 Total: -57.81 kcal Atomic # 8 Polarization: -11.52 SS G_CDS: 0.09 Total: -11.42 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -33.90 -11.44 -45.33 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001048928765.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.413 kcal (2) G-P(sol) polarization free energy of solvation -33.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.335 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds