Wall clock time and date at job start Tue Mar 31 2020 22:14:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.35472 * 125.11098 * 2 1 4 4 H 0.96996 * 124.79229 * 359.96235 * 3 2 1 5 5 C 1.37963 * 110.42410 * 179.97438 * 3 2 1 6 6 C 1.39119 * 133.19087 * 179.97438 * 5 3 2 7 7 C 1.37770 * 119.93141 * 180.02562 * 6 5 3 8 8 C 1.38759 * 120.63369 * 0.02675 * 7 6 5 9 9 C 1.37756 * 120.29960 * 359.97438 * 8 7 6 10 10 C 1.39272 * 119.67199 * 359.97438 * 9 8 7 11 11 C 1.36366 * 125.11558 * 179.69866 * 2 1 3 12 12 C 1.46918 * 126.77045 * 0.02562 * 11 2 1 13 13 O 1.21672 * 119.99607 * 90.02876 * 12 11 2 14 14 N 1.34771 * 120.00303 * 270.02695 * 12 11 2 15 15 C 1.46748 * 125.32630 * 359.69317 * 14 12 11 16 16 C 1.54092 * 106.63254 * 161.58375 * 15 14 12 17 17 H 1.09003 * 113.49405 * 151.36568 * 16 15 14 18 18 C 1.53966 * 109.45096 * 278.63818 * 16 15 14 19 19 N 1.46776 * 106.62891 * 138.17418 * 18 16 15 20 20 C 1.36938 * 125.33595 * 161.51944 * 19 18 16 21 21 H 1.07997 * 119.99984 * 354.15680 * 20 19 18 22 22 C 1.38815 * 119.99789 * 174.14973 * 20 19 18 23 23 N 1.31623 * 119.99870 * 6.99448 * 22 20 19 24 24 Si 1.86795 * 120.00114 * 186.98697 * 22 20 19 25 25 H 1.48501 * 109.47007 * 94.98822 * 24 22 20 26 26 H 1.48496 * 109.47380 * 214.98992 * 24 22 20 27 27 H 1.48502 * 109.46983 * 334.99096 * 24 22 20 28 28 C 1.46663 * 109.32370 * 341.49053 * 19 18 16 29 29 C 1.53731 * 107.94543 * 0.54021 * 28 19 18 30 30 H 1.08999 * 113.06077 * 140.00175 * 29 28 19 31 31 C 1.46639 * 125.33266 * 179.97438 * 14 12 11 32 32 H 1.08994 * 109.47207 * 90.02125 * 1 2 3 33 33 H 1.09002 * 109.47014 * 330.01809 * 1 2 3 34 34 H 1.08999 * 109.46445 * 210.02321 * 1 2 3 35 35 H 1.07998 * 120.03852 * 359.97438 * 6 5 3 36 36 H 1.07993 * 119.68428 * 180.02562 * 7 6 5 37 37 H 1.07997 * 119.84981 * 180.02562 * 8 7 6 38 38 H 1.07995 * 120.16326 * 179.97438 * 9 8 7 39 39 H 1.08997 * 110.00855 * 281.01096 * 15 14 12 40 40 H 1.09003 * 110.00982 * 42.38168 * 15 14 12 41 41 H 1.09000 * 110.03021 * 257.47238 * 18 16 15 42 42 H 1.09009 * 110.02357 * 18.88710 * 18 16 15 43 43 H 0.96999 * 120.00046 * 179.97438 * 23 22 20 44 44 H 1.09005 * 109.77212 * 240.92164 * 28 19 18 45 45 H 1.08998 * 109.77736 * 120.16389 * 28 19 18 46 46 H 1.09001 * 109.75535 * 300.44311 * 31 14 12 47 47 H 1.08994 * 109.75804 * 61.15822 * 31 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2862 1.1082 0.0000 4 1 1.9530 2.0191 -0.0005 5 6 3.6208 0.7584 0.0006 6 6 4.7990 1.4982 0.0004 7 6 6.0161 0.8525 0.0006 8 6 6.0811 -0.5336 0.0005 9 6 4.9256 -1.2836 0.0006 10 6 3.6885 -0.6439 0.0015 11 6 2.2915 -1.1154 0.0059 12 6 1.8347 -2.5118 0.0127 13 8 1.6465 -3.0954 -1.0382 14 7 1.6242 -3.1463 1.1829 15 6 1.8197 -2.5593 2.5136 16 6 1.0354 -3.4413 3.5043 17 1 1.4577 -3.4472 4.5092 18 6 -0.4518 -3.0434 3.4786 19 7 -1.2214 -4.2928 3.5117 20 6 -2.5419 -4.4006 3.8579 21 1 -3.0757 -3.5372 4.2265 22 6 -3.1943 -5.6197 3.7349 23 7 -2.5141 -6.7011 3.4182 24 14 -5.0375 -5.7255 4.0189 25 1 -5.7458 -5.6170 2.7182 26 1 -5.3666 -7.0264 4.6548 27 1 -5.4655 -4.6169 4.9095 28 6 -0.3546 -5.4074 3.1151 29 6 1.0447 -4.8399 2.8266 30 1 1.8484 -5.4795 3.1914 31 6 1.1697 -4.5331 1.3259 32 1 -0.3633 -0.0004 -1.0276 33 1 -0.3633 0.8902 0.5136 34 1 -0.3632 -0.8898 0.5142 35 1 4.7597 2.5774 -0.0008 36 1 6.9282 1.4307 0.0008 37 1 7.0420 -1.0266 0.0011 38 1 4.9788 -2.3622 0.0001 39 1 2.8793 -2.5588 2.7690 40 1 1.4304 -1.5413 2.5330 41 1 -0.6905 -2.4347 4.3507 42 1 -0.6748 -2.4916 2.5654 43 1 -2.9699 -7.5531 3.3326 44 1 -0.7519 -5.8824 2.2180 45 1 -0.2975 -6.1360 3.9238 46 1 0.2002 -4.6548 0.8426 47 1 1.8953 -5.2074 0.8713 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001048928765.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:14:42 Heat of formation + Delta-G solvation = 34.444601 kcal Electronic energy + Delta-G solvation = -29777.901966 eV Core-core repulsion = 25925.627824 eV Total energy + Delta-G solvation = -3852.274141 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.53943 -41.31669 -39.41645 -38.00971 -36.59568 -34.11428 -33.26683 -32.05162 -31.77801 -31.27476 -30.33928 -28.17591 -27.27126 -27.01464 -24.96867 -23.35934 -22.89120 -22.17437 -21.85949 -20.85539 -19.90816 -18.94257 -18.58933 -17.79376 -17.51275 -16.96963 -16.73966 -16.42087 -15.98354 -15.77901 -15.61359 -15.42803 -14.90213 -14.73739 -14.67708 -14.40672 -14.09881 -13.94329 -13.65995 -13.62633 -13.49361 -13.29505 -13.25118 -13.11559 -12.76148 -12.69625 -12.43632 -12.40305 -12.00786 -11.93774 -11.87295 -11.73182 -11.59024 -11.45480 -11.12926 -10.68361 -10.64410 -9.68239 -9.17725 -8.86982 -8.69334 -7.86004 -5.19812 0.08593 0.64366 1.33091 1.45191 1.46648 1.47562 1.55897 1.91894 2.21503 2.49428 2.94511 3.31695 3.39055 3.49298 3.57422 3.73440 3.81156 3.92626 3.94721 4.20189 4.21881 4.28374 4.29148 4.36686 4.42390 4.51549 4.55064 4.56499 4.58077 4.69189 4.78058 4.81002 4.88715 4.94490 4.97843 5.02862 5.13120 5.13769 5.26094 5.35708 5.48532 5.50227 5.61861 5.62023 5.64932 5.71716 5.77617 6.15354 6.21497 6.49155 6.57522 7.08858 7.11647 7.80059 8.42660 9.24759 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.020452 B = 0.002923 C = 0.002783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1368.716021 B = 9575.508115 C =10057.370606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.146 3.854 3 N -0.563 5.563 4 H 0.436 0.564 5 C 0.083 3.917 6 C -0.119 4.119 7 C -0.102 4.102 8 C -0.134 4.134 9 C -0.103 4.103 10 C -0.094 4.094 11 C -0.254 4.254 12 C 0.607 3.393 13 O -0.591 6.591 14 N -0.599 5.599 15 C 0.126 3.874 16 C -0.095 4.095 17 H 0.128 0.872 18 C 0.142 3.858 19 N -0.623 5.623 20 C -0.241 4.241 21 H 0.084 0.916 22 C -0.065 4.065 23 N -0.948 5.948 24 Si 0.975 3.025 25 H -0.292 1.292 26 H -0.295 1.295 27 H -0.265 1.265 28 C 0.197 3.803 29 C -0.108 4.108 30 H 0.118 0.882 31 C 0.125 3.875 32 H 0.089 0.911 33 H 0.110 0.890 34 H 0.064 0.936 35 H 0.153 0.847 36 H 0.159 0.841 37 H 0.144 0.856 38 H 0.107 0.893 39 H 0.088 0.912 40 H 0.083 0.917 41 H 0.045 0.955 42 H 0.011 0.989 43 H 0.246 0.754 44 H 0.009 0.991 45 H 0.014 0.986 46 H 0.035 0.965 47 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.457 20.585 -3.344 27.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.032 3.968 3 N -0.167 5.167 4 H 0.277 0.723 5 C -0.023 4.023 6 C -0.139 4.139 7 C -0.121 4.121 8 C -0.153 4.153 9 C -0.122 4.122 10 C -0.098 4.098 11 C -0.265 4.265 12 C 0.397 3.603 13 O -0.472 6.472 14 N -0.330 5.330 15 C 0.004 3.996 16 C -0.114 4.114 17 H 0.146 0.854 18 C 0.017 3.983 19 N -0.349 5.349 20 C -0.370 4.370 21 H 0.101 0.899 22 C -0.258 4.258 23 N -0.597 5.597 24 Si 0.803 3.197 25 H -0.219 1.219 26 H -0.221 1.221 27 H -0.189 1.189 28 C 0.072 3.928 29 C -0.128 4.128 30 H 0.136 0.864 31 C 0.002 3.998 32 H 0.108 0.892 33 H 0.129 0.871 34 H 0.083 0.917 35 H 0.171 0.829 36 H 0.177 0.823 37 H 0.162 0.838 38 H 0.125 0.875 39 H 0.106 0.894 40 H 0.101 0.899 41 H 0.064 0.936 42 H 0.029 0.971 43 H 0.056 0.944 44 H 0.028 0.972 45 H 0.032 0.968 46 H 0.054 0.946 47 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 17.153 20.312 -3.930 26.874 hybrid contribution -1.645 -0.785 -0.173 1.831 sum 15.508 19.527 -4.103 25.271 Atomic orbital electron populations 1.20662 0.85877 1.04911 1.04409 1.20359 0.93913 0.84905 0.97630 1.41288 1.03483 1.08480 1.63403 0.72288 1.18381 0.85359 0.93080 1.05443 1.20429 0.88732 1.00481 1.04265 1.21220 0.97831 0.94148 0.98894 1.21216 0.97791 0.94626 1.01650 1.20591 0.91216 0.99553 1.00838 1.18933 0.91535 0.93151 1.06219 1.19472 0.93519 0.90973 1.22517 1.17360 0.75650 0.85729 0.81546 1.90756 1.54535 1.69131 1.32808 1.48288 1.64917 1.13269 1.06526 1.21947 1.00539 0.97242 0.79899 1.22987 0.95132 0.93468 0.99847 0.85450 1.21410 0.90238 0.88723 0.97930 1.44521 1.07747 1.03165 1.79477 1.19428 0.85731 0.95795 1.36043 0.89853 1.25648 1.02299 0.95523 1.02345 1.70187 1.35054 0.98714 1.55775 0.85109 0.80152 0.77058 0.77349 1.21933 1.22138 1.18897 1.20731 0.86170 0.89162 0.96729 1.22976 0.98945 0.98079 0.92798 0.86425 1.21728 0.98318 0.82782 0.96961 0.89221 0.87136 0.91710 0.82919 0.82321 0.83792 0.87497 0.89389 0.89907 0.93632 0.97079 0.94440 0.97241 0.96789 0.94625 0.91564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.00 10.20 71.24 0.73 -1.28 16 2 C 0.15 3.34 7.12 41.56 0.30 3.63 16 3 N -0.56 -9.33 5.99 -175.37 -1.05 -10.38 16 4 H 0.44 3.70 8.96 -92.71 -0.83 2.87 16 5 C 0.08 1.65 7.26 38.92 0.28 1.93 16 6 C -0.12 -1.68 10.07 22.37 0.23 -1.46 16 7 C -0.10 -1.36 10.01 22.28 0.22 -1.14 16 8 C -0.13 -2.31 10.03 22.28 0.22 -2.09 16 9 C -0.10 -2.49 10.09 22.40 0.23 -2.26 16 10 C -0.09 -2.47 6.36 -20.08 -0.13 -2.60 16 11 C -0.25 -7.54 4.96 -19.01 -0.09 -7.64 16 12 C 0.61 22.32 7.17 86.52 0.62 22.94 16 13 O -0.59 -26.88 17.42 -4.26 -0.07 -26.95 16 14 N -0.60 -20.34 3.30 -821.81 -2.71 -23.06 16 15 C 0.13 3.40 5.75 86.70 0.50 3.90 16 16 C -0.09 -2.92 4.16 -9.27 -0.04 -2.96 16 17 H 0.13 3.27 8.14 -2.39 -0.02 3.26 16 18 C 0.14 5.56 6.49 86.65 0.56 6.12 16 19 N -0.62 -31.68 3.38 -697.57 -2.36 -34.04 16 20 C -0.24 -13.46 10.24 84.03 0.86 -12.60 16 21 H 0.08 4.43 7.84 -2.91 -0.02 4.40 16 22 C -0.06 -3.72 5.48 84.86 0.46 -3.26 16 23 N -0.95 -57.56 10.30 21.65 0.22 -57.34 16 24 Si 0.97 46.12 29.56 68.60 2.03 48.14 16 25 H -0.29 -13.85 7.11 99.48 0.71 -13.14 16 26 H -0.29 -14.00 7.11 99.48 0.71 -13.29 16 27 H -0.26 -11.66 7.11 99.48 0.71 -10.96 16 28 C 0.20 9.71 4.78 86.59 0.41 10.12 16 29 C -0.11 -3.90 4.02 -9.49 -0.04 -3.94 16 30 H 0.12 3.60 8.14 -2.39 -0.02 3.58 16 31 C 0.13 4.74 6.21 86.58 0.54 5.28 16 32 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 33 H 0.11 1.37 8.14 -2.39 -0.02 1.35 16 34 H 0.06 1.66 7.84 -2.39 -0.02 1.64 16 35 H 0.15 1.14 8.06 -2.91 -0.02 1.12 16 36 H 0.16 1.05 8.06 -2.91 -0.02 1.03 16 37 H 0.14 1.78 8.06 -2.91 -0.02 1.76 16 38 H 0.11 2.73 8.06 -2.91 -0.02 2.71 16 39 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 40 H 0.08 2.07 7.63 -2.39 -0.02 2.05 16 41 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 42 H 0.01 0.46 7.72 -2.38 -0.02 0.44 16 43 H 0.25 14.60 8.31 -92.71 -0.77 13.83 16 44 H 0.01 0.54 6.61 -2.38 -0.02 0.52 16 45 H 0.01 0.76 7.52 -2.39 -0.02 0.74 16 46 H 0.04 1.63 7.29 -2.39 -0.02 1.61 16 47 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 Total: -1.00 -79.74 380.62 2.08 -77.66 By element: Atomic # 1 Polarization: 13.09 SS G_CDS: 0.16 Total: 13.25 kcal Atomic # 6 Polarization: 6.85 SS G_CDS: 5.86 Total: 12.71 kcal Atomic # 7 Polarization: -118.91 SS G_CDS: -5.90 Total: -124.81 kcal Atomic # 8 Polarization: -26.88 SS G_CDS: -0.07 Total: -26.95 kcal Atomic # 14 Polarization: 46.12 SS G_CDS: 2.03 Total: 48.14 kcal Total: -79.74 2.08 -77.66 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001048928765.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.107 kcal (2) G-P(sol) polarization free energy of solvation -79.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.663 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds