Wall clock time and date at job start Tue Mar 31 2020 22:32:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38947 * 119.67716 * 2 1 4 4 C 1.36437 * 120.61485 * 180.02562 * 3 2 1 5 5 C 1.40098 * 119.82905 * 359.97438 * 4 3 2 6 6 C 1.41593 * 133.37606 * 179.97438 * 5 4 3 7 7 C 1.35861 * 107.72609 * 180.02562 * 6 5 4 8 8 C 1.47067 * 125.43065 * 180.26732 * 7 6 5 9 9 O 1.21647 * 119.99492 * 6.26325 * 8 7 6 10 10 N 1.34769 * 119.99941 * 186.26730 * 8 7 6 11 11 C 1.46669 * 125.33582 * 185.43011 * 10 8 7 12 12 C 1.53734 * 107.94379 * 180.54238 * 11 10 8 13 13 H 1.08992 * 112.56177 * 139.71585 * 12 11 10 14 14 C 1.53689 * 109.34126 * 266.25261 * 12 11 10 15 15 N 1.46640 * 108.01114 * 127.55459 * 14 12 11 16 16 C 1.36937 * 125.33349 * 180.81503 * 15 14 12 17 17 H 1.07997 * 120.00170 * 180.02562 * 16 15 14 18 18 C 1.38809 * 119.99529 * 0.02695 * 16 15 14 19 19 N 1.31619 * 120.00449 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 119.99773 * 179.97438 * 18 16 15 21 21 H 1.48502 * 109.47158 * 359.97438 * 20 18 16 22 22 H 1.48508 * 109.47179 * 119.99809 * 20 18 16 23 23 H 1.48493 * 109.47278 * 239.99814 * 20 18 16 24 24 C 1.46748 * 109.33783 * 0.83731 * 15 14 12 25 25 C 1.53924 * 106.72314 * 341.65662 * 24 15 14 26 26 H 1.09007 * 113.01480 * 150.83389 * 25 24 15 27 27 C 1.46776 * 125.34240 * 5.12302 * 10 8 7 28 28 N 1.38141 * 109.14032 * 0.02562 * 7 6 5 29 29 H 0.97005 * 125.60995 * 179.97438 * 28 7 6 30 30 C 1.37479 * 108.79097 * 359.97438 * 28 7 6 31 31 C 1.37671 * 119.67545 * 180.02562 * 2 1 3 32 32 H 1.09000 * 109.47024 * 269.98015 * 1 2 3 33 33 H 1.08999 * 109.47249 * 29.97293 * 1 2 3 34 34 H 1.08991 * 109.47438 * 149.97818 * 1 2 3 35 35 H 1.08002 * 119.68825 * 0.04745 * 3 2 1 36 36 H 1.08001 * 120.08117 * 179.97438 * 4 3 2 37 37 H 1.07997 * 126.13495 * 0.06417 * 6 5 4 38 38 H 1.08998 * 109.77445 * 300.16346 * 11 10 8 39 39 H 1.08996 * 109.77747 * 60.92377 * 11 10 8 40 40 H 1.09001 * 109.76054 * 247.19651 * 14 12 11 41 41 H 1.09006 * 109.76126 * 7.91541 * 14 12 11 42 42 H 0.96995 * 120.00159 * 180.02562 * 19 18 16 43 43 H 1.09004 * 110.01007 * 222.34148 * 24 15 14 44 44 H 1.08998 * 110.01264 * 100.97606 * 24 15 14 45 45 H 1.09003 * 110.02956 * 280.77751 * 27 10 8 46 46 H 1.08997 * 110.02740 * 42.18748 * 27 10 8 47 47 H 1.07997 * 120.09169 * 359.95310 * 31 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1949 1.2072 0.0000 4 6 3.5591 1.2295 -0.0005 5 6 4.2758 0.0257 -0.0005 6 6 5.6575 -0.2834 -0.0014 7 6 5.7787 -1.6366 -0.0015 8 6 7.0483 -2.3789 0.0033 9 8 8.1014 -1.7818 0.1226 10 7 7.0449 -3.7205 -0.1247 11 6 8.2252 -4.5853 -0.0230 12 6 7.7696 -6.0365 -0.2459 13 1 8.4720 -6.6067 -0.8537 14 6 7.4784 -6.6930 1.1129 15 7 6.1316 -7.2705 1.0581 16 6 5.5091 -7.9273 2.0858 17 1 4.5122 -8.3201 1.9506 18 6 6.1595 -8.0882 3.3015 19 7 7.3746 -7.6099 3.4663 20 14 5.3102 -8.9837 4.7038 21 1 3.9599 -9.4204 4.2665 22 1 6.1136 -10.1709 5.0917 23 1 5.1817 -8.0711 5.8681 24 6 5.5554 -7.0346 -0.2708 25 6 6.3724 -5.8989 -0.9125 26 1 6.4067 -5.9606 -2.0003 27 6 5.8587 -4.5459 -0.3814 28 7 4.5193 -2.2041 -0.0012 29 1 4.3283 -3.1552 -0.0016 30 6 3.5808 -1.1994 -0.0004 31 6 2.1886 -1.1961 -0.0005 32 1 -0.3633 -0.0004 1.0277 33 1 -0.3634 0.8902 -0.5134 34 1 -0.3634 -0.8897 -0.5141 35 1 1.6446 2.1365 0.0008 36 1 4.0851 2.1728 -0.0009 37 1 6.4694 0.4288 -0.0014 38 1 8.9534 -4.3064 -0.7845 39 1 8.6704 -4.4866 0.9670 40 1 8.2086 -7.4787 1.3066 41 1 7.5259 -5.9429 1.9023 42 1 7.8292 -7.7227 4.3156 43 1 4.5113 -6.7360 -0.1770 44 1 5.6324 -7.9376 -0.8763 45 1 5.2990 -4.6926 0.5424 46 1 5.2263 -4.0681 -1.1295 47 1 1.6448 -2.1292 -0.0002 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001048966049.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:32:04 Heat of formation + Delta-G solvation = 61.046695 kcal Electronic energy + Delta-G solvation = -29367.983582 eV Core-core repulsion = 25516.862993 eV Total energy + Delta-G solvation = -3851.120588 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.73407 -40.09245 -38.32074 -37.24794 -35.12887 -32.86587 -32.35712 -31.00177 -30.48671 -29.60000 -29.39335 -26.97456 -25.74456 -25.53311 -23.74667 -22.82105 -21.37389 -20.91913 -20.26248 -19.82699 -19.44102 -17.64443 -17.09216 -16.86873 -16.23309 -15.71786 -15.48427 -15.07734 -14.64859 -14.57345 -14.30670 -14.07902 -13.85463 -13.63987 -13.54085 -13.28745 -13.08096 -12.84946 -12.67076 -12.32520 -12.21401 -12.11373 -11.83102 -11.66362 -11.58187 -11.32280 -11.01814 -10.97973 -10.90828 -10.57498 -10.23912 -10.15202 -10.03294 -9.98743 -9.88980 -9.75183 -8.71093 -8.56471 -8.28018 -7.78852 -6.95282 -5.82401 -3.17145 0.69308 1.51534 2.05557 2.80536 3.09217 3.33186 3.36771 3.38648 3.41463 3.75996 4.38045 4.40584 4.54448 4.61570 4.72684 4.88658 4.96082 5.03041 5.06185 5.24331 5.29582 5.36230 5.40286 5.41558 5.45816 5.49590 5.53603 5.57577 5.63828 5.70373 5.82291 5.85911 5.96824 5.99991 6.10958 6.20382 6.30107 6.37474 6.42084 6.43265 6.47780 6.57679 6.60675 6.65661 6.98791 7.30387 7.44226 7.46196 7.54981 7.71350 8.13242 8.15578 9.11158 9.71559 10.34082 11.28895 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.011272 B = 0.003270 C = 0.002820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2483.436853 B = 8560.063499 C = 9926.056595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.060 4.060 3 C -0.150 4.150 4 C -0.058 4.058 5 C -0.123 4.123 6 C -0.113 4.113 7 C 0.028 3.972 8 C 0.594 3.406 9 O -0.528 6.528 10 N -0.605 5.605 11 C 0.121 3.879 12 C -0.122 4.122 13 H 0.094 0.906 14 C 0.183 3.817 15 N -0.602 5.602 16 C -0.234 4.234 17 H 0.079 0.921 18 C -0.005 4.005 19 N -0.919 5.919 20 Si 0.912 3.088 21 H -0.280 1.280 22 H -0.289 1.289 23 H -0.290 1.290 24 C 0.145 3.855 25 C -0.108 4.108 26 H 0.094 0.906 27 C 0.099 3.901 28 N -0.579 5.579 29 H 0.422 0.578 30 C 0.114 3.886 31 C -0.133 4.133 32 H 0.071 0.929 33 H 0.067 0.933 34 H 0.065 0.935 35 H 0.122 0.878 36 H 0.124 0.876 37 H 0.155 0.845 38 H 0.064 0.936 39 H 0.077 0.923 40 H 0.047 0.953 41 H 0.052 0.948 42 H 0.253 0.747 43 H 0.037 0.963 44 H 0.023 0.977 45 H 0.081 0.919 46 H 0.065 0.935 47 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.003 13.655 -10.699 19.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.061 4.061 3 C -0.169 4.169 4 C -0.077 4.077 5 C -0.127 4.127 6 C -0.140 4.140 7 C -0.082 4.082 8 C 0.383 3.617 9 O -0.405 6.405 10 N -0.337 5.337 11 C -0.001 4.001 12 C -0.142 4.142 13 H 0.113 0.887 14 C 0.058 3.942 15 N -0.329 5.329 16 C -0.362 4.362 17 H 0.097 0.903 18 C -0.201 4.201 19 N -0.566 5.566 20 Si 0.742 3.258 21 H -0.205 1.205 22 H -0.216 1.216 23 H -0.217 1.217 24 C 0.018 3.982 25 C -0.128 4.128 26 H 0.112 0.888 27 C -0.024 4.024 28 N -0.187 5.187 29 H 0.266 0.734 30 C 0.003 3.997 31 C -0.153 4.153 32 H 0.089 0.911 33 H 0.086 0.914 34 H 0.084 0.916 35 H 0.140 0.860 36 H 0.142 0.858 37 H 0.172 0.828 38 H 0.082 0.918 39 H 0.096 0.904 40 H 0.065 0.935 41 H 0.070 0.930 42 H 0.064 0.936 43 H 0.055 0.945 44 H 0.041 0.959 45 H 0.099 0.901 46 H 0.083 0.917 47 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -8.334 13.784 -10.389 19.167 hybrid contribution -0.482 -1.082 0.859 1.463 sum -8.815 12.702 -9.530 18.162 Atomic orbital electron populations 1.20784 0.90975 1.02743 1.02416 1.19586 0.95761 0.92214 0.98575 1.20491 0.93905 0.97304 1.05178 1.20361 0.93639 0.96187 0.97519 1.18197 0.92993 0.92904 1.08654 1.20845 0.95388 0.92994 1.04760 1.20126 0.84086 0.93234 1.10777 1.16815 0.87208 0.80260 0.77418 1.90827 1.31089 1.67722 1.50820 1.48159 1.10475 1.05046 1.70023 1.21896 0.87004 0.88877 1.02307 1.23185 0.95894 0.94517 1.00592 0.88732 1.21150 0.87133 0.96565 0.89362 1.44219 1.14015 1.66124 1.08531 1.19059 0.98559 1.28731 0.89897 0.90290 1.24813 0.96615 1.00801 0.97910 1.69954 1.12299 1.49879 1.24431 0.86052 0.78472 0.78999 0.82250 1.20474 1.21630 1.21715 1.21177 0.95281 0.93813 0.87945 1.22934 0.96749 0.93818 0.99332 0.88803 1.22342 0.88293 0.91511 1.00298 1.42746 1.04070 1.08814 1.63109 0.73395 1.18354 0.90885 0.87875 1.02571 1.19919 0.89769 0.98466 1.07176 0.91062 0.91446 0.91554 0.86029 0.85793 0.82761 0.91756 0.90445 0.93504 0.92995 0.93633 0.94533 0.95911 0.90095 0.91682 0.85970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.80 9.99 36.00 0.36 -0.44 16 2 C -0.06 -0.59 5.88 -104.57 -0.61 -1.21 16 3 C -0.15 -1.46 9.61 -39.97 -0.38 -1.84 16 4 C -0.06 -0.64 10.06 -39.53 -0.40 -1.03 16 5 C -0.12 -1.63 6.16 -106.93 -0.66 -2.29 16 6 C -0.11 -1.61 10.54 -39.16 -0.41 -2.02 16 7 C 0.03 0.42 6.75 -82.29 -0.56 -0.13 16 8 C 0.59 10.29 7.80 -12.68 -0.10 10.19 16 9 O -0.53 -10.43 17.16 5.24 0.09 -10.34 16 10 N -0.60 -9.93 3.31 -173.57 -0.57 -10.50 16 11 C 0.12 2.02 6.24 -3.57 -0.02 1.99 16 12 C -0.12 -2.06 4.02 -88.60 -0.36 -2.42 16 13 H 0.09 1.43 8.14 -51.93 -0.42 1.01 16 14 C 0.18 4.11 4.75 -3.61 -0.02 4.10 16 15 N -0.60 -14.15 3.37 -171.93 -0.58 -14.73 16 16 C -0.23 -6.18 10.25 -15.06 -0.15 -6.33 16 17 H 0.08 2.01 7.83 -52.49 -0.41 1.60 16 18 C 0.00 -0.13 5.48 -17.43 -0.10 -0.22 16 19 N -0.92 -26.11 10.25 55.49 0.57 -25.54 16 20 Si 0.91 21.52 29.55 -169.99 -5.02 16.49 16 21 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 22 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 23 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 24 C 0.14 2.63 6.37 -3.43 -0.02 2.61 16 25 C -0.11 -1.63 4.19 -88.25 -0.37 -2.00 16 26 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 27 C 0.10 1.45 4.41 -3.28 -0.01 1.44 16 28 N -0.58 -7.89 5.46 -7.36 -0.04 -7.93 16 29 H 0.42 5.29 5.12 -40.82 -0.21 5.08 16 30 C 0.11 1.51 7.25 -83.98 -0.61 0.90 16 31 C -0.13 -1.50 9.71 -39.42 -0.38 -1.88 16 32 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.07 0.39 8.08 -51.93 -0.42 -0.03 16 34 H 0.07 0.43 8.08 -51.93 -0.42 0.01 16 35 H 0.12 0.89 8.06 -52.49 -0.42 0.46 16 36 H 0.12 1.07 8.06 -52.49 -0.42 0.64 16 37 H 0.15 2.00 8.06 -52.49 -0.42 1.58 16 38 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 39 H 0.08 1.43 7.44 -51.93 -0.39 1.04 16 40 H 0.05 1.19 7.45 -51.93 -0.39 0.80 16 41 H 0.05 1.33 6.51 -51.93 -0.34 1.00 16 42 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 43 H 0.04 0.63 7.95 -51.93 -0.41 0.22 16 44 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 45 H 0.08 1.35 7.11 -51.93 -0.37 0.98 16 46 H 0.07 0.80 6.53 -51.93 -0.34 0.46 16 47 H 0.12 1.18 8.06 -52.49 -0.42 0.75 16 LS Contribution 373.24 15.07 5.62 5.62 Total: -1.00 -31.53 373.24 -11.37 -42.90 By element: Atomic # 1 Polarization: 11.27 SS G_CDS: -6.63 Total: 4.64 kcal Atomic # 6 Polarization: 4.20 SS G_CDS: -4.81 Total: -0.60 kcal Atomic # 7 Polarization: -58.08 SS G_CDS: -0.63 Total: -58.70 kcal Atomic # 8 Polarization: -10.43 SS G_CDS: 0.09 Total: -10.34 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -31.53 -11.37 -42.90 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001048966049.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.947 kcal (2) G-P(sol) polarization free energy of solvation -31.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.900 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds