Wall clock time and date at job start Tue Mar 31 2020 22:32:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38947 * 119.67716 * 2 1 4 4 C 1.36437 * 120.61485 * 180.02562 * 3 2 1 5 5 C 1.40098 * 119.82905 * 359.97438 * 4 3 2 6 6 C 1.41593 * 133.37606 * 179.97438 * 5 4 3 7 7 C 1.35861 * 107.72609 * 180.02562 * 6 5 4 8 8 C 1.47067 * 125.43065 * 180.26732 * 7 6 5 9 9 O 1.21647 * 119.99492 * 6.26325 * 8 7 6 10 10 N 1.34769 * 119.99941 * 186.26730 * 8 7 6 11 11 C 1.46669 * 125.33582 * 185.43011 * 10 8 7 12 12 C 1.53734 * 107.94379 * 180.54238 * 11 10 8 13 13 H 1.08992 * 112.56177 * 139.71585 * 12 11 10 14 14 C 1.53689 * 109.34126 * 266.25261 * 12 11 10 15 15 N 1.46640 * 108.01114 * 127.55459 * 14 12 11 16 16 C 1.36937 * 125.33349 * 180.81503 * 15 14 12 17 17 H 1.07997 * 120.00170 * 180.02562 * 16 15 14 18 18 C 1.38809 * 119.99529 * 0.02695 * 16 15 14 19 19 N 1.31619 * 120.00449 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 119.99773 * 179.97438 * 18 16 15 21 21 H 1.48502 * 109.47158 * 359.97438 * 20 18 16 22 22 H 1.48508 * 109.47179 * 119.99809 * 20 18 16 23 23 H 1.48493 * 109.47278 * 239.99814 * 20 18 16 24 24 C 1.46748 * 109.33783 * 0.83731 * 15 14 12 25 25 C 1.53924 * 106.72314 * 341.65662 * 24 15 14 26 26 H 1.09007 * 113.01480 * 150.83389 * 25 24 15 27 27 C 1.46776 * 125.34240 * 5.12302 * 10 8 7 28 28 N 1.38141 * 109.14032 * 0.02562 * 7 6 5 29 29 H 0.97005 * 125.60995 * 179.97438 * 28 7 6 30 30 C 1.37479 * 108.79097 * 359.97438 * 28 7 6 31 31 C 1.37671 * 119.67545 * 180.02562 * 2 1 3 32 32 H 1.09000 * 109.47024 * 269.98015 * 1 2 3 33 33 H 1.08999 * 109.47249 * 29.97293 * 1 2 3 34 34 H 1.08991 * 109.47438 * 149.97818 * 1 2 3 35 35 H 1.08002 * 119.68825 * 0.04745 * 3 2 1 36 36 H 1.08001 * 120.08117 * 179.97438 * 4 3 2 37 37 H 1.07997 * 126.13495 * 0.06417 * 6 5 4 38 38 H 1.08998 * 109.77445 * 300.16346 * 11 10 8 39 39 H 1.08996 * 109.77747 * 60.92377 * 11 10 8 40 40 H 1.09001 * 109.76054 * 247.19651 * 14 12 11 41 41 H 1.09006 * 109.76126 * 7.91541 * 14 12 11 42 42 H 0.96995 * 120.00159 * 180.02562 * 19 18 16 43 43 H 1.09004 * 110.01007 * 222.34148 * 24 15 14 44 44 H 1.08998 * 110.01264 * 100.97606 * 24 15 14 45 45 H 1.09003 * 110.02956 * 280.77751 * 27 10 8 46 46 H 1.08997 * 110.02740 * 42.18748 * 27 10 8 47 47 H 1.07997 * 120.09169 * 359.95310 * 31 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1949 1.2072 0.0000 4 6 3.5591 1.2295 -0.0005 5 6 4.2758 0.0257 -0.0005 6 6 5.6575 -0.2834 -0.0014 7 6 5.7787 -1.6366 -0.0015 8 6 7.0483 -2.3789 0.0033 9 8 8.1014 -1.7818 0.1226 10 7 7.0449 -3.7205 -0.1247 11 6 8.2252 -4.5853 -0.0230 12 6 7.7696 -6.0365 -0.2459 13 1 8.4720 -6.6067 -0.8537 14 6 7.4784 -6.6930 1.1129 15 7 6.1316 -7.2705 1.0581 16 6 5.5091 -7.9273 2.0858 17 1 4.5122 -8.3201 1.9506 18 6 6.1595 -8.0882 3.3015 19 7 7.3746 -7.6099 3.4663 20 14 5.3102 -8.9837 4.7038 21 1 3.9599 -9.4204 4.2665 22 1 6.1136 -10.1709 5.0917 23 1 5.1817 -8.0711 5.8681 24 6 5.5554 -7.0346 -0.2708 25 6 6.3724 -5.8989 -0.9125 26 1 6.4067 -5.9606 -2.0003 27 6 5.8587 -4.5459 -0.3814 28 7 4.5193 -2.2041 -0.0012 29 1 4.3283 -3.1552 -0.0016 30 6 3.5808 -1.1994 -0.0004 31 6 2.1886 -1.1961 -0.0005 32 1 -0.3633 -0.0004 1.0277 33 1 -0.3634 0.8902 -0.5134 34 1 -0.3634 -0.8897 -0.5141 35 1 1.6446 2.1365 0.0008 36 1 4.0851 2.1728 -0.0009 37 1 6.4694 0.4288 -0.0014 38 1 8.9534 -4.3064 -0.7845 39 1 8.6704 -4.4866 0.9670 40 1 8.2086 -7.4787 1.3066 41 1 7.5259 -5.9429 1.9023 42 1 7.8292 -7.7227 4.3156 43 1 4.5113 -6.7360 -0.1770 44 1 5.6324 -7.9376 -0.8763 45 1 5.2990 -4.6926 0.5424 46 1 5.2263 -4.0681 -1.1295 47 1 1.6448 -2.1292 -0.0002 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001048966049.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:32:03 Heat of formation + Delta-G solvation = 43.314969 kcal Electronic energy + Delta-G solvation = -29368.752487 eV Core-core repulsion = 25516.862993 eV Total energy + Delta-G solvation = -3851.889493 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.77164 -41.38852 -39.69114 -38.17266 -36.73106 -34.25194 -33.64318 -32.28564 -31.53789 -31.21673 -30.36841 -28.13605 -27.20984 -27.00465 -25.09714 -23.87979 -22.52547 -21.87792 -21.78787 -21.04822 -20.81264 -19.06847 -18.52097 -18.15284 -17.53532 -16.83076 -16.63294 -16.56014 -16.15082 -15.58861 -15.58222 -15.42821 -14.98465 -14.75841 -14.66215 -14.48566 -14.32530 -14.06084 -13.74992 -13.67596 -13.54427 -13.32913 -13.16682 -12.90415 -12.78913 -12.73506 -12.58812 -12.14406 -11.99144 -11.95918 -11.91353 -11.82229 -11.60547 -11.44128 -11.40567 -10.84957 -10.73263 -9.90349 -9.19495 -8.90027 -8.74008 -7.87812 -5.22701 -0.29506 0.65394 0.99358 1.43805 1.44162 1.54144 1.64098 1.96150 2.16146 2.46820 2.89514 3.13579 3.28907 3.38394 3.56411 3.68573 3.75866 3.88200 3.99646 4.04498 4.12335 4.19434 4.28659 4.31889 4.37837 4.44636 4.47266 4.58663 4.67560 4.77446 4.80962 4.84278 4.90449 4.93831 4.97475 4.99385 5.01277 5.08410 5.30072 5.31191 5.46616 5.50420 5.54410 5.60564 5.65364 5.73842 5.74978 6.12114 6.18658 6.23521 6.34391 6.81197 7.08757 7.77940 8.38474 9.22170 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.011272 B = 0.003270 C = 0.002820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2483.436853 B = 8560.063499 C = 9926.056595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.053 4.053 3 C -0.149 4.149 4 C -0.063 4.063 5 C -0.146 4.146 6 C -0.110 4.110 7 C 0.001 3.999 8 C 0.592 3.408 9 O -0.563 6.563 10 N -0.606 5.606 11 C 0.124 3.876 12 C -0.110 4.110 13 H 0.121 0.879 14 C 0.195 3.805 15 N -0.622 5.622 16 C -0.237 4.237 17 H 0.088 0.912 18 C -0.066 4.066 19 N -0.951 5.951 20 Si 0.973 3.027 21 H -0.261 1.261 22 H -0.294 1.294 23 H -0.298 1.298 24 C 0.138 3.862 25 C -0.090 4.090 26 H 0.139 0.861 27 C 0.102 3.898 28 N -0.577 5.577 29 H 0.424 0.576 30 C 0.103 3.897 31 C -0.151 4.151 32 H 0.079 0.921 33 H 0.084 0.916 34 H 0.073 0.927 35 H 0.152 0.848 36 H 0.145 0.855 37 H 0.159 0.841 38 H 0.085 0.915 39 H 0.047 0.953 40 H 0.007 0.993 41 H 0.008 0.992 42 H 0.244 0.756 43 H 0.051 0.949 44 H 0.035 0.965 45 H 0.058 0.942 46 H 0.098 0.902 47 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.045 14.731 -12.828 22.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.054 4.054 3 C -0.167 4.167 4 C -0.082 4.082 5 C -0.151 4.151 6 C -0.137 4.137 7 C -0.109 4.109 8 C 0.382 3.618 9 O -0.443 6.443 10 N -0.338 5.338 11 C 0.002 3.998 12 C -0.130 4.130 13 H 0.139 0.861 14 C 0.070 3.930 15 N -0.349 5.349 16 C -0.366 4.366 17 H 0.105 0.895 18 C -0.259 4.259 19 N -0.600 5.600 20 Si 0.802 3.198 21 H -0.185 1.185 22 H -0.221 1.221 23 H -0.226 1.226 24 C 0.013 3.987 25 C -0.109 4.109 26 H 0.157 0.843 27 C -0.020 4.020 28 N -0.187 5.187 29 H 0.268 0.732 30 C -0.007 4.007 31 C -0.171 4.171 32 H 0.098 0.902 33 H 0.103 0.897 34 H 0.092 0.908 35 H 0.170 0.830 36 H 0.162 0.838 37 H 0.176 0.824 38 H 0.103 0.897 39 H 0.065 0.935 40 H 0.025 0.975 41 H 0.026 0.974 42 H 0.053 0.947 43 H 0.069 0.931 44 H 0.053 0.947 45 H 0.076 0.924 46 H 0.115 0.885 47 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -11.425 14.840 -12.562 22.551 hybrid contribution 0.320 -1.325 1.514 2.038 sum -11.105 13.515 -11.048 20.689 Atomic orbital electron populations 1.20866 0.88681 1.04051 1.03279 1.20050 0.97457 0.91781 0.96152 1.20903 0.93616 0.98553 1.03655 1.20688 0.94369 0.96203 0.96925 1.18430 0.92538 0.94081 1.10025 1.21053 0.96344 0.92807 1.03526 1.19866 0.83919 0.93503 1.13578 1.17116 0.87602 0.80384 0.76659 1.90790 1.32462 1.68426 1.52611 1.48209 1.10865 1.05014 1.69688 1.21798 0.87701 0.88952 1.01375 1.23027 0.98019 0.94136 0.97780 0.86098 1.20792 0.86241 0.94342 0.91612 1.44496 1.14535 1.65738 1.10118 1.19476 0.98799 1.27620 0.90661 0.89465 1.25610 0.97393 1.02453 1.00475 1.70193 1.13786 1.51730 1.24271 0.85084 0.78220 0.77373 0.79127 1.18546 1.22131 1.22590 1.21415 0.96277 0.95392 0.85628 1.22994 0.94111 0.92441 1.01393 0.84282 1.22362 0.87871 0.91596 1.00196 1.42634 1.03585 1.09011 1.63448 0.73152 1.18703 0.91671 0.87724 1.02616 1.20204 0.89046 0.99848 1.08048 0.90241 0.89683 0.90814 0.83038 0.83760 0.82360 0.89655 0.93452 0.97486 0.97394 0.94677 0.93122 0.94672 0.92392 0.88451 0.84661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.17 9.99 71.23 0.71 -0.46 16 2 C -0.05 -0.89 5.88 -19.83 -0.12 -1.01 16 3 C -0.15 -2.41 9.61 22.02 0.21 -2.20 16 4 C -0.06 -1.24 10.06 22.30 0.22 -1.02 16 5 C -0.15 -3.75 6.16 -21.36 -0.13 -3.88 16 6 C -0.11 -3.14 10.54 22.55 0.24 -2.91 16 7 C 0.00 0.02 6.75 39.91 0.27 0.29 16 8 C 0.59 20.96 7.80 86.56 0.68 21.63 16 9 O -0.56 -23.06 17.16 -4.18 -0.07 -23.14 16 10 N -0.61 -19.96 3.31 -821.28 -2.72 -22.68 16 11 C 0.12 4.18 6.24 86.59 0.54 4.72 16 12 C -0.11 -3.65 4.02 -9.48 -0.04 -3.69 16 13 H 0.12 3.42 8.14 -2.39 -0.02 3.40 16 14 C 0.20 9.17 4.75 86.58 0.41 9.59 16 15 N -0.62 -29.52 3.37 -697.87 -2.35 -31.88 16 16 C -0.24 -12.60 10.25 84.03 0.86 -11.74 16 17 H 0.09 4.39 7.83 -2.91 -0.02 4.36 16 18 C -0.07 -3.70 5.48 84.86 0.47 -3.24 16 19 N -0.95 -56.88 10.25 21.65 0.22 -56.66 16 20 Si 0.97 45.23 29.55 68.60 2.03 47.25 16 21 H -0.26 -11.22 7.11 99.48 0.71 -10.51 16 22 H -0.29 -13.77 7.11 99.48 0.71 -13.06 16 23 H -0.30 -14.14 7.11 99.48 0.71 -13.43 16 24 C 0.14 4.75 6.37 86.64 0.55 5.30 16 25 C -0.09 -2.48 4.19 -9.26 -0.04 -2.51 16 26 H 0.14 2.74 8.14 -2.38 -0.02 2.72 16 27 C 0.10 2.88 4.41 86.72 0.38 3.26 16 28 N -0.58 -15.53 5.46 -177.19 -0.97 -16.50 16 29 H 0.42 10.37 5.12 -92.70 -0.47 9.90 16 30 C 0.10 2.64 7.25 39.14 0.28 2.92 16 31 C -0.15 -3.12 9.71 22.37 0.22 -2.90 16 32 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 33 H 0.08 0.62 8.08 -2.39 -0.02 0.60 16 34 H 0.07 0.69 8.08 -2.39 -0.02 0.67 16 35 H 0.15 1.53 8.06 -2.91 -0.02 1.51 16 36 H 0.14 2.13 8.06 -2.91 -0.02 2.11 16 37 H 0.16 4.19 8.06 -2.91 -0.02 4.17 16 38 H 0.09 2.53 8.14 -2.39 -0.02 2.52 16 39 H 0.05 1.87 7.44 -2.39 -0.02 1.86 16 40 H 0.01 0.37 7.45 -2.39 -0.02 0.36 16 41 H 0.01 0.44 6.51 -2.38 -0.02 0.42 16 42 H 0.24 14.38 8.31 -92.71 -0.77 13.61 16 43 H 0.05 1.62 7.95 -2.38 -0.02 1.60 16 44 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 45 H 0.06 1.92 7.11 -2.39 -0.02 1.91 16 46 H 0.10 2.14 6.53 -2.39 -0.02 2.13 16 47 H 0.14 2.33 8.06 -2.91 -0.02 2.31 16 Total: -1.00 -72.77 373.24 2.38 -70.40 By element: Atomic # 1 Polarization: 20.51 SS G_CDS: 0.52 Total: 21.03 kcal Atomic # 6 Polarization: 6.45 SS G_CDS: 5.72 Total: 12.17 kcal Atomic # 7 Polarization: -121.90 SS G_CDS: -5.82 Total: -127.71 kcal Atomic # 8 Polarization: -23.06 SS G_CDS: -0.07 Total: -23.14 kcal Atomic # 14 Polarization: 45.23 SS G_CDS: 2.03 Total: 47.25 kcal Total: -72.77 2.38 -70.40 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001048966049.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.712 kcal (2) G-P(sol) polarization free energy of solvation -72.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.397 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds