Wall clock time and date at job start Tue Mar 31 2020 22:19:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38947 * 119.69134 * 2 1 4 4 C 1.37664 * 120.64747 * 179.97438 * 3 2 1 5 5 C 1.39235 * 119.81159 * 0.04591 * 4 3 2 6 6 N 1.37482 * 133.17890 * 179.97438 * 5 4 3 7 7 H 0.96998 * 125.60307 * 359.95671 * 6 5 4 8 8 C 1.38143 * 108.78489 * 179.97438 * 6 5 4 9 9 C 1.47066 * 125.42686 * 179.97438 * 8 6 5 10 10 O 1.21649 * 119.99604 * 174.31994 * 9 8 6 11 11 N 1.34771 * 120.00013 * 354.32682 * 9 8 6 12 12 C 1.46669 * 125.33957 * 4.74184 * 11 9 8 13 13 C 1.53726 * 107.94194 * 180.54892 * 12 11 9 14 14 H 1.09004 * 112.56059 * 139.71850 * 13 12 11 15 15 C 1.53690 * 109.34119 * 266.24863 * 13 12 11 16 16 N 1.46639 * 108.00453 * 127.55828 * 15 13 12 17 17 C 1.36935 * 125.32663 * 180.81741 * 16 15 13 18 18 H 1.08001 * 119.99950 * 180.02562 * 17 16 15 19 19 C 1.38806 * 120.00301 * 0.02789 * 17 16 15 20 20 N 1.31618 * 120.00145 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 120.00206 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47382 * 59.99751 * 21 19 17 23 23 H 1.48508 * 109.47019 * 179.97438 * 21 19 17 24 24 H 1.48501 * 109.46948 * 299.99274 * 21 19 17 25 25 C 1.46744 * 109.34650 * 0.83849 * 16 15 13 26 26 C 1.53932 * 106.71845 * 341.65738 * 25 16 15 27 27 H 1.09003 * 113.01344 * 150.82717 * 26 25 16 28 28 C 1.46774 * 125.33743 * 184.44487 * 11 9 8 29 29 C 1.35867 * 109.13973 * 359.74960 * 8 6 5 30 30 C 1.40853 * 119.42794 * 359.95288 * 5 4 3 31 31 C 1.36434 * 119.69421 * 180.02562 * 2 1 3 32 32 H 1.09002 * 109.47681 * 269.97926 * 1 2 3 33 33 H 1.08999 * 109.46862 * 29.98557 * 1 2 3 34 34 H 1.09006 * 109.46761 * 149.97969 * 1 2 3 35 35 H 1.07996 * 119.67684 * 0.02562 * 3 2 1 36 36 H 1.08006 * 120.09814 * 180.02562 * 4 3 2 37 37 H 1.09003 * 109.77238 * 300.17104 * 12 11 9 38 38 H 1.08997 * 109.77133 * 60.92686 * 12 11 9 39 39 H 1.08994 * 109.76313 * 247.20051 * 15 13 12 40 40 H 1.08998 * 109.75886 * 7.92445 * 15 13 12 41 41 H 0.97003 * 120.00780 * 180.02562 * 20 19 17 42 42 H 1.08997 * 110.01213 * 222.34528 * 25 16 15 43 43 H 1.08999 * 110.01313 * 100.97279 * 25 16 15 44 44 H 1.09004 * 110.02519 * 280.76893 * 28 11 9 45 45 H 1.09001 * 110.03148 * 42.18290 * 28 11 9 46 46 H 1.08001 * 126.13669 * 180.30599 * 29 8 6 47 47 H 1.08007 * 120.08592 * 359.96434 * 31 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1952 1.2070 0.0000 4 6 3.5717 1.2300 0.0005 5 6 4.2839 0.0336 0.0001 6 7 5.6266 -0.2618 0.0000 7 1 6.3476 0.3870 -0.0004 8 6 5.7800 -1.6347 0.0001 9 6 7.0656 -2.3489 -0.0005 10 8 7.0882 -3.5607 0.1039 11 7 8.2186 -1.6609 -0.1166 12 6 8.3346 -0.1992 -0.1500 13 6 9.8226 0.1543 -0.3056 14 1 9.9851 0.9882 -0.9886 15 6 10.4388 0.3851 1.0833 16 7 11.6343 -0.4569 1.1943 17 6 12.4459 -0.5385 2.2942 18 1 13.3079 -1.1892 2.2821 19 6 12.1608 0.2148 3.4246 20 7 11.1107 1.0080 3.4393 21 14 13.2685 0.1039 4.9248 22 1 14.6455 0.5188 4.5551 23 1 12.7509 1.0004 5.9896 24 1 13.2896 -1.2952 5.4221 25 6 11.8250 -1.1979 -0.0579 26 6 10.4776 -1.1649 -0.8015 27 1 10.5877 -1.2098 -1.8851 28 6 9.5557 -2.2567 -0.2233 29 6 4.5538 -2.2199 0.0059 30 6 3.5838 -1.1886 0.0001 31 6 2.1828 -1.1852 -0.0005 32 1 -0.3634 -0.0004 1.0276 33 1 -0.3633 0.8901 -0.5136 34 1 -0.3633 -0.8899 -0.5142 35 1 1.6450 2.1363 0.0004 36 1 4.0976 2.1734 0.0009 37 1 7.7713 0.1962 -0.9953 38 1 7.9506 0.2225 0.7788 39 1 10.7149 1.4336 1.1944 40 1 9.7208 0.1091 1.8555 41 1 10.9116 1.5348 4.2291 42 1 12.1068 -2.2285 0.1578 43 1 12.5958 -0.7185 -0.6613 44 1 9.9076 -2.5630 0.7619 45 1 9.5294 -3.1154 -0.8942 46 1 4.3547 -3.2814 0.0120 47 1 1.6392 -2.1185 -0.0004 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001048973624.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:19:40 Heat of formation + Delta-G solvation = 61.695443 kcal Electronic energy + Delta-G solvation = -29160.119821 eV Core-core repulsion = 25309.027365 eV Total energy + Delta-G solvation = -3851.092456 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.74917 -40.10045 -38.31979 -37.27804 -35.15969 -32.53786 -32.38787 -31.54060 -30.38828 -29.76916 -28.99250 -26.85464 -25.78891 -25.57678 -23.96471 -22.72419 -21.54532 -20.69508 -20.23731 -19.78995 -19.56885 -17.60422 -17.42722 -16.83980 -16.12875 -15.67101 -15.27182 -15.09913 -14.67801 -14.54093 -14.34642 -14.02211 -13.84622 -13.74528 -13.53755 -13.34620 -13.05386 -12.89950 -12.79988 -12.33260 -12.24395 -12.04502 -11.79047 -11.58683 -11.56979 -11.24928 -11.02819 -10.99290 -10.84685 -10.58836 -10.24542 -10.22111 -10.04725 -9.98784 -9.95201 -9.73891 -8.69278 -8.58727 -8.21321 -7.83745 -6.93215 -5.81294 -3.14612 0.68930 1.46716 2.06255 2.79338 3.08854 3.35559 3.36224 3.40943 3.41573 3.73741 4.36008 4.42958 4.52923 4.63185 4.75181 4.86283 4.92177 5.05046 5.07775 5.20491 5.23938 5.27174 5.42032 5.44050 5.47809 5.51066 5.53090 5.57222 5.61620 5.72230 5.88461 5.90056 5.92355 6.02128 6.07558 6.20131 6.22492 6.29922 6.45811 6.49800 6.53706 6.57109 6.59511 6.70855 6.96904 7.28556 7.39737 7.43960 7.53723 7.69556 8.12312 8.16849 9.13165 9.73621 10.36137 11.30639 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.015588 B = 0.002733 C = 0.002539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1795.879265 B =10241.253497 C =11026.065300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.120 4.120 3 C -0.090 4.090 4 C -0.126 4.126 5 C 0.105 3.895 6 N -0.579 5.579 7 H 0.422 0.578 8 C 0.030 3.970 9 C 0.594 3.406 10 O -0.527 6.527 11 N -0.604 5.604 12 C 0.099 3.901 13 C -0.121 4.121 14 H 0.095 0.905 15 C 0.185 3.815 16 N -0.601 5.601 17 C -0.230 4.230 18 H 0.079 0.921 19 C -0.006 4.006 20 N -0.924 5.924 21 Si 0.914 3.086 22 H -0.284 1.284 23 H -0.290 1.290 24 H -0.284 1.284 25 C 0.145 3.855 26 C -0.111 4.111 27 H 0.092 0.908 28 C 0.121 3.879 29 C -0.115 4.115 30 C -0.114 4.114 31 C -0.063 4.063 32 H 0.066 0.934 33 H 0.063 0.937 34 H 0.063 0.937 35 H 0.125 0.875 36 H 0.123 0.877 37 H 0.060 0.940 38 H 0.075 0.925 39 H 0.047 0.953 40 H 0.050 0.950 41 H 0.253 0.747 42 H 0.040 0.960 43 H 0.022 0.978 44 H 0.082 0.918 45 H 0.071 0.929 46 H 0.155 0.845 47 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.954 0.740 -10.829 20.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.121 4.121 3 C -0.109 4.109 4 C -0.147 4.147 5 C -0.006 4.006 6 N -0.188 5.188 7 H 0.266 0.734 8 C -0.080 4.080 9 C 0.383 3.617 10 O -0.404 6.404 11 N -0.337 5.337 12 C -0.024 4.024 13 C -0.141 4.141 14 H 0.113 0.887 15 C 0.060 3.940 16 N -0.328 5.328 17 C -0.358 4.358 18 H 0.097 0.903 19 C -0.203 4.203 20 N -0.571 5.571 21 Si 0.744 3.256 22 H -0.211 1.211 23 H -0.216 1.216 24 H -0.211 1.211 25 C 0.018 3.982 26 C -0.130 4.130 27 H 0.110 0.890 28 C 0.000 4.000 29 C -0.142 4.142 30 C -0.119 4.119 31 C -0.082 4.082 32 H 0.085 0.915 33 H 0.082 0.918 34 H 0.082 0.918 35 H 0.143 0.857 36 H 0.141 0.859 37 H 0.078 0.922 38 H 0.093 0.907 39 H 0.065 0.935 40 H 0.068 0.932 41 H 0.063 0.937 42 H 0.058 0.942 43 H 0.040 0.960 44 H 0.100 0.900 45 H 0.089 0.911 46 H 0.172 0.828 47 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -16.797 0.205 -10.531 19.826 hybrid contribution 0.986 0.511 0.896 1.427 sum -15.811 0.716 -9.635 18.529 Atomic orbital electron populations 1.20713 0.91206 1.02455 1.02059 1.19352 0.95984 0.92831 1.03952 1.20728 0.92812 0.97583 0.99801 1.20080 0.93844 0.94954 1.05809 1.18400 0.83283 0.95599 1.03290 1.42780 1.06486 1.06424 1.63133 0.73397 1.20147 0.94988 0.82350 1.10474 1.16819 0.81254 0.86286 0.77385 1.90834 1.86309 1.12609 1.50600 1.48162 1.06658 1.07341 1.71519 1.22181 0.99142 0.80646 1.00472 1.23148 0.91684 0.97527 1.01711 0.88707 1.21117 0.88765 0.95699 0.88441 1.44174 1.28871 1.48558 1.11202 1.19002 1.04963 1.21616 0.90250 0.90308 1.24792 0.98186 0.99033 0.98257 1.69914 1.27808 1.30391 1.29000 0.86173 0.79720 0.77420 0.82299 1.21098 1.21585 1.21092 1.21178 0.92685 0.96096 0.88218 1.22986 0.96689 0.94069 0.99304 0.88996 1.22063 0.79957 0.95898 1.02114 1.20842 0.89113 0.99274 1.04993 1.18176 0.93557 0.92254 1.07880 1.20225 0.91425 0.97798 0.98732 0.91541 0.91826 0.91798 0.85671 0.85872 0.92193 0.90735 0.93511 0.93162 0.93651 0.94151 0.96004 0.89995 0.91075 0.82758 0.85897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.73 9.99 36.00 0.36 -0.37 16 2 C -0.12 -1.16 5.84 -105.01 -0.61 -1.77 16 3 C -0.09 -0.85 9.66 -39.53 -0.38 -1.23 16 4 C -0.13 -1.35 10.08 -39.42 -0.40 -1.75 16 5 C 0.10 1.34 7.25 -83.97 -0.61 0.73 16 6 N -0.58 -7.62 5.65 -7.35 -0.04 -7.66 16 7 H 0.42 4.94 4.82 -40.82 -0.20 4.74 16 8 C 0.03 0.46 6.81 -82.29 -0.56 -0.10 16 9 C 0.59 10.26 7.81 -12.68 -0.10 10.16 16 10 O -0.53 -10.49 17.16 5.23 0.09 -10.40 16 11 N -0.60 -9.91 3.31 -173.57 -0.57 -10.49 16 12 C 0.10 1.43 4.50 -3.57 -0.02 1.41 16 13 C -0.12 -1.95 4.02 -88.60 -0.36 -2.31 16 14 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 15 C 0.18 4.09 4.75 -3.61 -0.02 4.07 16 16 N -0.60 -14.43 3.37 -171.94 -0.58 -15.01 16 17 C -0.23 -6.19 10.25 -15.06 -0.15 -6.34 16 18 H 0.08 2.05 7.83 -52.49 -0.41 1.64 16 19 C -0.01 -0.18 5.48 -17.43 -0.10 -0.27 16 20 N -0.92 -26.14 10.25 55.49 0.57 -25.58 16 21 Si 0.91 21.77 29.55 -169.99 -5.02 16.75 16 22 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 23 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 24 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 25 C 0.14 2.76 6.37 -3.42 -0.02 2.74 16 26 C -0.11 -1.74 4.19 -88.25 -0.37 -2.11 16 27 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 28 C 0.12 2.05 6.08 -3.29 -0.02 2.03 16 29 C -0.12 -1.63 10.54 -39.16 -0.41 -2.04 16 30 C -0.11 -1.49 6.16 -106.93 -0.66 -2.15 16 31 C -0.06 -0.69 9.68 -39.53 -0.38 -1.07 16 32 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 33 H 0.06 0.36 8.08 -51.93 -0.42 -0.06 16 34 H 0.06 0.38 8.07 -51.93 -0.42 -0.03 16 35 H 0.13 0.88 8.06 -52.49 -0.42 0.45 16 36 H 0.12 1.07 8.06 -52.48 -0.42 0.64 16 37 H 0.06 0.70 6.98 -51.93 -0.36 0.34 16 38 H 0.07 1.12 6.51 -51.93 -0.34 0.79 16 39 H 0.05 1.16 7.45 -51.93 -0.39 0.77 16 40 H 0.05 1.26 6.51 -51.93 -0.34 0.93 16 41 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 42 H 0.04 0.76 7.94 -51.93 -0.41 0.35 16 43 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 44 H 0.08 1.63 7.72 -51.93 -0.40 1.23 16 45 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 46 H 0.15 2.00 8.06 -52.49 -0.42 1.58 16 47 H 0.12 1.10 8.06 -52.48 -0.42 0.67 16 LS Contribution 373.22 15.07 5.62 5.62 Total: -1.00 -31.86 373.22 -11.37 -43.23 By element: Atomic # 1 Polarization: 10.53 SS G_CDS: -6.63 Total: 3.90 kcal Atomic # 6 Polarization: 4.44 SS G_CDS: -4.81 Total: -0.37 kcal Atomic # 7 Polarization: -58.11 SS G_CDS: -0.63 Total: -58.73 kcal Atomic # 8 Polarization: -10.49 SS G_CDS: 0.09 Total: -10.40 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -31.86 -11.37 -43.23 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001048973624.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.922 kcal (2) G-P(sol) polarization free energy of solvation -31.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.226 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds