Wall clock time and date at job start Tue Mar 31 2020 22:19:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38947 * 119.69134 * 2 1 4 4 C 1.37664 * 120.64747 * 179.97438 * 3 2 1 5 5 C 1.39235 * 119.81159 * 0.04591 * 4 3 2 6 6 N 1.37482 * 133.17890 * 179.97438 * 5 4 3 7 7 H 0.96998 * 125.60307 * 359.95671 * 6 5 4 8 8 C 1.38143 * 108.78489 * 179.97438 * 6 5 4 9 9 C 1.47066 * 125.42686 * 179.97438 * 8 6 5 10 10 O 1.21649 * 119.99604 * 174.31994 * 9 8 6 11 11 N 1.34771 * 120.00013 * 354.32682 * 9 8 6 12 12 C 1.46669 * 125.33957 * 4.74184 * 11 9 8 13 13 C 1.53726 * 107.94194 * 180.54892 * 12 11 9 14 14 H 1.09004 * 112.56059 * 139.71850 * 13 12 11 15 15 C 1.53690 * 109.34119 * 266.24863 * 13 12 11 16 16 N 1.46639 * 108.00453 * 127.55828 * 15 13 12 17 17 C 1.36935 * 125.32663 * 180.81741 * 16 15 13 18 18 H 1.08001 * 119.99950 * 180.02562 * 17 16 15 19 19 C 1.38806 * 120.00301 * 0.02789 * 17 16 15 20 20 N 1.31618 * 120.00145 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 120.00206 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47382 * 59.99751 * 21 19 17 23 23 H 1.48508 * 109.47019 * 179.97438 * 21 19 17 24 24 H 1.48501 * 109.46948 * 299.99274 * 21 19 17 25 25 C 1.46744 * 109.34650 * 0.83849 * 16 15 13 26 26 C 1.53932 * 106.71845 * 341.65738 * 25 16 15 27 27 H 1.09003 * 113.01344 * 150.82717 * 26 25 16 28 28 C 1.46774 * 125.33743 * 184.44487 * 11 9 8 29 29 C 1.35867 * 109.13973 * 359.74960 * 8 6 5 30 30 C 1.40853 * 119.42794 * 359.95288 * 5 4 3 31 31 C 1.36434 * 119.69421 * 180.02562 * 2 1 3 32 32 H 1.09002 * 109.47681 * 269.97926 * 1 2 3 33 33 H 1.08999 * 109.46862 * 29.98557 * 1 2 3 34 34 H 1.09006 * 109.46761 * 149.97969 * 1 2 3 35 35 H 1.07996 * 119.67684 * 0.02562 * 3 2 1 36 36 H 1.08006 * 120.09814 * 180.02562 * 4 3 2 37 37 H 1.09003 * 109.77238 * 300.17104 * 12 11 9 38 38 H 1.08997 * 109.77133 * 60.92686 * 12 11 9 39 39 H 1.08994 * 109.76313 * 247.20051 * 15 13 12 40 40 H 1.08998 * 109.75886 * 7.92445 * 15 13 12 41 41 H 0.97003 * 120.00780 * 180.02562 * 20 19 17 42 42 H 1.08997 * 110.01213 * 222.34528 * 25 16 15 43 43 H 1.08999 * 110.01313 * 100.97279 * 25 16 15 44 44 H 1.09004 * 110.02519 * 280.76893 * 28 11 9 45 45 H 1.09001 * 110.03148 * 42.18290 * 28 11 9 46 46 H 1.08001 * 126.13669 * 180.30599 * 29 8 6 47 47 H 1.08007 * 120.08592 * 359.96434 * 31 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1952 1.2070 0.0000 4 6 3.5717 1.2300 0.0005 5 6 4.2839 0.0336 0.0001 6 7 5.6266 -0.2618 0.0000 7 1 6.3476 0.3870 -0.0004 8 6 5.7800 -1.6347 0.0001 9 6 7.0656 -2.3489 -0.0005 10 8 7.0882 -3.5607 0.1039 11 7 8.2186 -1.6609 -0.1166 12 6 8.3346 -0.1992 -0.1500 13 6 9.8226 0.1543 -0.3056 14 1 9.9851 0.9882 -0.9886 15 6 10.4388 0.3851 1.0833 16 7 11.6343 -0.4569 1.1943 17 6 12.4459 -0.5385 2.2942 18 1 13.3079 -1.1892 2.2821 19 6 12.1608 0.2148 3.4246 20 7 11.1107 1.0080 3.4393 21 14 13.2685 0.1039 4.9248 22 1 14.6455 0.5188 4.5551 23 1 12.7509 1.0004 5.9896 24 1 13.2896 -1.2952 5.4221 25 6 11.8250 -1.1979 -0.0579 26 6 10.4776 -1.1649 -0.8015 27 1 10.5877 -1.2098 -1.8851 28 6 9.5557 -2.2567 -0.2233 29 6 4.5538 -2.2199 0.0059 30 6 3.5838 -1.1886 0.0001 31 6 2.1828 -1.1852 -0.0005 32 1 -0.3634 -0.0004 1.0276 33 1 -0.3633 0.8901 -0.5136 34 1 -0.3633 -0.8899 -0.5142 35 1 1.6450 2.1363 0.0004 36 1 4.0976 2.1734 0.0009 37 1 7.7713 0.1962 -0.9953 38 1 7.9506 0.2225 0.7788 39 1 10.7149 1.4336 1.1944 40 1 9.7208 0.1091 1.8555 41 1 10.9116 1.5348 4.2291 42 1 12.1068 -2.2285 0.1578 43 1 12.5958 -0.7185 -0.6613 44 1 9.9076 -2.5630 0.7619 45 1 9.5294 -3.1154 -0.8942 46 1 4.3547 -3.2814 0.0120 47 1 1.6392 -2.1185 -0.0004 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001048973624.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:19:39 Heat of formation + Delta-G solvation = 43.602575 kcal Electronic energy + Delta-G solvation = -29160.904387 eV Core-core repulsion = 25309.027365 eV Total energy + Delta-G solvation = -3851.877022 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.76992 -41.39150 -39.68849 -38.18717 -36.76123 -34.28040 -33.27650 -32.49997 -31.87316 -31.28409 -30.02472 -27.92433 -27.46111 -26.77307 -25.37738 -23.85030 -22.57754 -21.84269 -21.68258 -21.02710 -20.86078 -19.03664 -18.51901 -18.40715 -17.48405 -16.96495 -16.67537 -16.23025 -16.02699 -15.66591 -15.49659 -15.41059 -15.02062 -14.74581 -14.68120 -14.45867 -14.36940 -14.08625 -13.87239 -13.69816 -13.57059 -13.30719 -13.15088 -12.87949 -12.79340 -12.70273 -12.52251 -12.08298 -12.04441 -11.98463 -11.91208 -11.77378 -11.61350 -11.49681 -11.37444 -10.92795 -10.71323 -9.92166 -9.12283 -8.89541 -8.75385 -7.88818 -5.22389 -0.28867 0.62893 1.01715 1.43194 1.45604 1.51403 1.63461 1.98403 2.15632 2.46757 2.89437 3.14622 3.27003 3.35913 3.57876 3.69991 3.76052 3.82329 4.06968 4.07800 4.09111 4.17718 4.23386 4.31948 4.37755 4.49102 4.50449 4.63808 4.68223 4.72206 4.79824 4.82405 4.92781 4.95411 4.97824 5.01092 5.06289 5.14010 5.27328 5.31857 5.43705 5.45051 5.56426 5.59971 5.64944 5.73579 5.77673 6.12485 6.19055 6.23183 6.36351 6.80652 7.09619 7.77888 8.37906 9.20949 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.015588 B = 0.002733 C = 0.002539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1795.879265 B =10241.253497 C =11026.065300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.120 4.120 3 C -0.082 4.082 4 C -0.137 4.137 5 C 0.093 3.907 6 N -0.575 5.575 7 H 0.426 0.574 8 C 0.006 3.994 9 C 0.592 3.408 10 O -0.565 6.565 11 N -0.606 5.606 12 C 0.104 3.896 13 C -0.108 4.108 14 H 0.130 0.870 15 C 0.195 3.805 16 N -0.624 5.624 17 C -0.241 4.241 18 H 0.081 0.919 19 C -0.064 4.064 20 N -0.948 5.948 21 Si 0.974 3.026 22 H -0.275 1.275 23 H -0.295 1.295 24 H -0.282 1.282 25 C 0.138 3.862 26 C -0.091 4.091 27 H 0.138 0.862 28 C 0.122 3.878 29 C -0.115 4.115 30 C -0.136 4.136 31 C -0.074 4.074 32 H 0.074 0.926 33 H 0.079 0.921 34 H 0.071 0.929 35 H 0.156 0.844 36 H 0.143 0.857 37 H 0.100 0.900 38 H 0.064 0.936 39 H 0.013 0.987 40 H 0.009 0.991 41 H 0.246 0.754 42 H 0.038 0.962 43 H 0.037 0.963 44 H 0.041 0.959 45 H 0.084 0.916 46 H 0.156 0.844 47 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.629 1.917 -12.742 22.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.121 4.121 3 C -0.102 4.102 4 C -0.158 4.158 5 C -0.017 4.017 6 N -0.185 5.185 7 H 0.271 0.729 8 C -0.104 4.104 9 C 0.382 3.618 10 O -0.444 6.444 11 N -0.338 5.338 12 C -0.019 4.019 13 C -0.128 4.128 14 H 0.148 0.852 15 C 0.070 3.930 16 N -0.351 5.351 17 C -0.370 4.370 18 H 0.099 0.901 19 C -0.257 4.257 20 N -0.597 5.597 21 Si 0.802 3.198 22 H -0.200 1.200 23 H -0.221 1.221 24 H -0.209 1.209 25 C 0.013 3.987 26 C -0.110 4.110 27 H 0.156 0.844 28 C 0.000 4.000 29 C -0.143 4.143 30 C -0.141 4.141 31 C -0.093 4.093 32 H 0.092 0.908 33 H 0.098 0.902 34 H 0.090 0.910 35 H 0.174 0.826 36 H 0.161 0.839 37 H 0.118 0.882 38 H 0.082 0.918 39 H 0.032 0.968 40 H 0.027 0.973 41 H 0.055 0.945 42 H 0.057 0.943 43 H 0.055 0.945 44 H 0.059 0.941 45 H 0.103 0.897 46 H 0.174 0.826 47 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -18.453 1.391 -12.478 22.319 hybrid contribution 1.400 0.153 1.503 2.060 sum -17.053 1.544 -10.975 20.338 Atomic orbital electron populations 1.20774 0.88953 1.03690 1.02899 1.19770 0.97673 0.92396 1.02223 1.21184 0.92537 0.98856 0.97600 1.20416 0.94515 0.94966 1.05874 1.18757 0.83027 0.96464 1.03457 1.42649 1.06963 1.05613 1.63301 0.72916 1.19846 0.94059 0.83337 1.13141 1.17130 0.82046 0.86028 0.76583 1.90795 1.86952 1.14180 1.52512 1.48219 1.06278 1.08144 1.71113 1.22210 0.98458 0.79552 1.01694 1.23055 0.92176 0.99082 0.98446 0.85165 1.20838 0.87590 0.93401 0.91211 1.44483 1.28990 1.49424 1.12165 1.19375 1.05256 1.20923 0.91453 0.90105 1.25571 0.99751 0.99447 1.00946 1.70136 1.29248 1.31253 1.29062 0.85224 0.78433 0.77104 0.79020 1.20041 1.22138 1.20864 1.21386 0.95106 0.95412 0.86844 1.22994 0.93946 0.92863 1.01213 0.84389 1.21967 0.80613 0.97126 1.00321 1.21029 0.89404 0.99796 1.04062 1.18389 0.94547 0.92013 1.09116 1.20498 0.90670 0.99263 0.98875 0.90770 0.90248 0.91024 0.82640 0.83933 0.88174 0.91835 0.96839 0.97290 0.94521 0.94339 0.94530 0.94095 0.89742 0.82604 0.84449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.08 9.99 71.24 0.71 -0.37 16 2 C -0.12 -1.97 5.84 -20.12 -0.12 -2.09 16 3 C -0.08 -1.30 9.66 22.30 0.22 -1.08 16 4 C -0.14 -2.61 10.08 22.37 0.23 -2.39 16 5 C 0.09 2.29 7.25 39.14 0.28 2.58 16 6 N -0.58 -14.83 5.65 -177.17 -1.00 -15.83 16 7 H 0.43 9.59 4.82 -92.71 -0.45 9.15 16 8 C 0.01 0.18 6.81 39.92 0.27 0.45 16 9 C 0.59 20.91 7.81 86.56 0.68 21.58 16 10 O -0.56 -23.34 17.16 -4.19 -0.07 -23.41 16 11 N -0.61 -19.85 3.31 -821.29 -2.72 -22.57 16 12 C 0.10 2.88 4.50 86.59 0.39 3.27 16 13 C -0.11 -3.32 4.02 -9.49 -0.04 -3.36 16 14 H 0.13 3.18 8.14 -2.39 -0.02 3.16 16 15 C 0.19 8.86 4.75 86.59 0.41 9.27 16 16 N -0.62 -30.57 3.37 -697.90 -2.35 -32.92 16 17 C -0.24 -13.27 10.25 84.03 0.86 -12.41 16 18 H 0.08 4.28 7.83 -2.91 -0.02 4.25 16 19 C -0.06 -3.61 5.48 84.86 0.47 -3.14 16 20 N -0.95 -55.90 10.25 21.65 0.22 -55.68 16 21 Si 0.97 45.83 29.55 68.60 2.03 47.86 16 22 H -0.27 -12.36 7.11 99.48 0.71 -11.66 16 23 H -0.30 -14.02 7.11 99.48 0.71 -13.31 16 24 H -0.28 -13.05 7.11 99.48 0.71 -12.35 16 25 C 0.14 5.15 6.37 86.65 0.55 5.70 16 26 C -0.09 -2.66 4.19 -9.26 -0.04 -2.70 16 27 H 0.14 2.94 8.14 -2.39 -0.02 2.92 16 28 C 0.12 4.10 6.08 86.72 0.53 4.62 16 29 C -0.12 -3.31 10.54 22.54 0.24 -3.07 16 30 C -0.14 -3.49 6.16 -21.36 -0.13 -3.62 16 31 C -0.07 -1.51 9.68 22.30 0.22 -1.29 16 32 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 33 H 0.08 0.58 8.08 -2.39 -0.02 0.56 16 34 H 0.07 0.64 8.07 -2.38 -0.02 0.62 16 35 H 0.16 1.48 8.06 -2.91 -0.02 1.46 16 36 H 0.14 2.08 8.06 -2.91 -0.02 2.06 16 37 H 0.10 2.05 6.98 -2.39 -0.02 2.03 16 38 H 0.06 1.94 6.51 -2.39 -0.02 1.93 16 39 H 0.01 0.69 7.45 -2.39 -0.02 0.67 16 40 H 0.01 0.48 6.51 -2.39 -0.02 0.46 16 41 H 0.25 14.24 8.31 -92.71 -0.77 13.47 16 42 H 0.04 1.45 7.94 -2.39 -0.02 1.43 16 43 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 44 H 0.04 1.70 7.72 -2.38 -0.02 1.68 16 45 H 0.08 2.60 8.14 -2.39 -0.02 2.58 16 46 H 0.16 4.20 8.06 -2.91 -0.02 4.18 16 47 H 0.14 2.25 8.06 -2.91 -0.02 2.22 16 Total: -1.00 -73.53 373.22 2.37 -71.16 By element: Atomic # 1 Polarization: 18.90 SS G_CDS: 0.55 Total: 19.45 kcal Atomic # 6 Polarization: 6.23 SS G_CDS: 5.72 Total: 11.95 kcal Atomic # 7 Polarization: -121.16 SS G_CDS: -5.85 Total: -127.01 kcal Atomic # 8 Polarization: -23.34 SS G_CDS: -0.07 Total: -23.41 kcal Atomic # 14 Polarization: 45.83 SS G_CDS: 2.03 Total: 47.86 kcal Total: -73.53 2.37 -71.16 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001048973624.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.760 kcal (2) G-P(sol) polarization free energy of solvation -73.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.157 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds