Wall clock time and date at job start Tue Mar 31 2020 22:42:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.34666 * 125.80667 * 2 1 4 4 H 0.97003 * 124.84719 * 0.02562 * 3 2 1 5 5 C 1.36442 * 110.30200 * 180.29810 * 3 2 1 6 6 C 1.34486 * 108.85667 * 359.74621 * 5 3 2 7 7 C 1.36774 * 125.80349 * 179.86589 * 2 1 3 8 8 C 1.47267 * 126.93794 * 359.97438 * 7 2 1 9 9 O 1.21629 * 119.99805 * 359.70688 * 8 7 2 10 10 N 1.34777 * 119.99566 * 179.70552 * 8 7 2 11 11 C 1.46500 * 119.99370 * 180.02562 * 10 8 7 12 12 C 1.50701 * 109.46840 * 180.02562 * 11 10 8 13 13 C 1.37963 * 119.70786 * 260.00049 * 12 11 10 14 14 C 1.38219 * 119.82878 * 180.08233 * 13 12 11 15 15 C 1.38005 * 119.71553 * 0.25137 * 14 13 12 16 16 C 1.38791 * 120.50820 * 359.84802 * 15 14 13 17 17 C 1.37725 * 119.84495 * 359.43784 * 16 15 14 18 18 C 1.50585 * 122.84760 * 181.01908 * 17 16 15 19 19 C 1.52792 * 110.92573 * 340.15887 * 18 17 16 20 20 N 1.47228 * 107.90884 * 47.31703 * 19 18 17 21 21 C 1.36935 * 121.32405 * 115.78037 * 20 19 18 22 22 H 1.07993 * 120.00250 * 335.41000 * 21 20 19 23 23 C 1.38815 * 119.99727 * 155.41237 * 21 20 19 24 24 N 1.31614 * 120.00396 * 344.27561 * 23 21 20 25 25 Si 1.86800 * 119.99740 * 164.27579 * 23 21 20 26 26 H 1.48503 * 109.47442 * 59.99980 * 25 23 21 27 27 H 1.48507 * 109.47021 * 179.97438 * 25 23 21 28 28 H 1.48502 * 109.47297 * 299.99937 * 25 23 21 29 29 C 1.46683 * 117.34667 * 295.80397 * 20 19 18 30 30 H 1.09000 * 109.46840 * 270.13475 * 1 2 3 31 31 H 1.09000 * 109.47013 * 30.13155 * 1 2 3 32 32 H 1.08998 * 109.46827 * 150.12980 * 1 2 3 33 33 H 1.07996 * 125.57118 * 179.77129 * 5 3 2 34 34 H 1.08000 * 126.83675 * 180.02562 * 6 5 3 35 35 H 0.96994 * 120.00306 * 0.02562 * 10 8 7 36 36 H 1.08995 * 109.47690 * 60.00481 * 11 10 8 37 37 H 1.09005 * 109.47224 * 299.99716 * 11 10 8 38 38 H 1.07998 * 120.07986 * 0.09695 * 13 12 11 39 39 H 1.07996 * 120.14274 * 180.28325 * 14 13 12 40 40 H 1.07996 * 119.74488 * 179.86561 * 15 14 13 41 41 H 1.09003 * 109.34213 * 219.67263 * 18 17 16 42 42 H 1.09000 * 108.95041 * 100.39550 * 18 17 16 43 43 H 1.08999 * 109.77311 * 287.71719 * 19 18 17 44 44 H 1.08991 * 109.77768 * 166.92301 * 19 18 17 45 45 H 0.96997 * 120.00250 * 180.02562 * 24 23 21 46 46 H 1.09002 * 109.43425 * 284.32348 * 29 20 19 47 47 H 1.09000 * 109.43209 * 164.46080 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2949 1.0921 0.0000 4 1 1.9735 2.0074 0.0004 5 6 3.6096 0.7274 -0.0067 6 6 3.6883 -0.6151 -0.0054 7 6 2.3071 -1.1093 0.0026 8 6 1.8702 -2.5156 0.0064 9 8 0.6839 -2.7838 0.0129 10 7 2.7850 -3.5054 0.0027 11 6 2.3503 -4.9044 0.0059 12 6 3.5581 -5.8057 0.0013 13 6 3.9763 -6.3824 -1.1802 14 6 5.0828 -7.2108 -1.1870 15 6 5.7586 -7.4592 -0.0097 16 6 5.3376 -6.8813 1.1798 17 6 4.2441 -6.0439 1.1857 18 6 3.7429 -5.3637 2.4322 19 6 4.2524 -6.0753 3.6846 20 7 5.6962 -6.3094 3.5166 21 6 6.6146 -5.7135 4.3392 22 1 6.3684 -4.7918 4.8451 23 6 7.8619 -6.2944 4.5227 24 7 8.0627 -7.5469 4.1719 25 14 9.2556 -5.2981 5.2674 26 1 8.8679 -4.8439 6.6271 27 1 10.4744 -6.1419 5.3568 28 1 9.5324 -4.1169 4.4111 29 6 6.1117 -7.2060 2.4325 30 1 -0.3633 0.0024 1.0277 31 1 -0.3633 0.8888 -0.5159 32 1 -0.3633 -0.8911 -0.5118 33 1 4.4498 1.4059 -0.0116 34 1 4.5890 -1.2110 -0.0092 35 1 3.7310 -3.2915 -0.0022 36 1 1.7475 -5.0997 -0.8809 37 1 1.7562 -5.0983 0.8990 38 1 3.4406 -6.1869 -2.0974 39 1 5.4173 -7.6612 -2.1098 40 1 6.6218 -8.1081 -0.0141 41 1 2.6529 -5.3711 2.4341 42 1 4.0944 -4.3319 2.4381 43 1 3.7358 -7.0277 3.8035 44 1 4.0798 -5.4496 4.5602 45 1 8.9342 -7.9529 4.3005 46 1 5.9174 -8.2389 2.7216 47 1 7.1776 -7.0773 2.2439 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001051284637.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:42:53 Heat of formation + Delta-G solvation = 49.848842 kcal Electronic energy + Delta-G solvation = -29032.217826 eV Core-core repulsion = 25180.611662 eV Total energy + Delta-G solvation = -3851.606163 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.35542 -39.76289 -38.65874 -35.93592 -34.79062 -32.71865 -31.92269 -31.64003 -30.88911 -30.08850 -28.74987 -26.76998 -25.60638 -25.50924 -23.12696 -22.40182 -22.06658 -20.87577 -20.32123 -19.42275 -18.93911 -17.82744 -16.75213 -16.28156 -15.77548 -15.56073 -15.38847 -14.97466 -14.78630 -14.23433 -14.09402 -13.97269 -13.59002 -13.58151 -13.21559 -13.08924 -12.89512 -12.83406 -12.70395 -12.52061 -12.49361 -12.22617 -11.89399 -11.70481 -11.48253 -11.20855 -10.91196 -10.82350 -10.69023 -10.36855 -10.10746 -9.88418 -9.78806 -9.69300 -9.05779 -8.79779 -8.66331 -8.29722 -8.20928 -7.83453 -6.76612 -5.82660 -3.22036 1.68195 1.69303 1.92651 2.30735 2.95405 3.37417 3.43056 3.44226 3.60438 3.64416 4.30097 4.47006 4.66276 4.83785 4.94274 5.02114 5.17404 5.21889 5.30487 5.36084 5.38514 5.46599 5.47461 5.59049 5.59494 5.73629 5.77847 5.86510 5.89584 6.05188 6.08289 6.17353 6.20807 6.28135 6.53263 6.58860 6.60638 6.63299 6.70888 6.78448 6.88519 6.90558 7.00341 7.15811 7.24325 7.25518 7.49789 7.63197 7.75939 7.77859 8.35974 8.46987 9.16700 9.79152 10.37468 11.27834 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010660 B = 0.003312 C = 0.002800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2626.121050 B = 8451.437459 C = 9998.316826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C 0.102 3.898 3 N -0.555 5.555 4 H 0.414 0.586 5 C -0.019 4.019 6 C -0.164 4.164 7 C -0.234 4.234 8 C 0.591 3.409 9 O -0.558 6.558 10 N -0.716 5.716 11 C 0.168 3.832 12 C -0.123 4.123 13 C -0.118 4.118 14 C -0.132 4.132 15 C -0.114 4.114 16 C -0.077 4.077 17 C -0.046 4.046 18 C -0.099 4.099 19 C 0.142 3.858 20 N -0.593 5.593 21 C -0.248 4.248 22 H 0.069 0.931 23 C 0.001 3.999 24 N -0.909 5.909 25 Si 0.905 3.095 26 H -0.283 1.283 27 H -0.290 1.290 28 H -0.284 1.284 29 C 0.205 3.795 30 H 0.077 0.923 31 H 0.061 0.939 32 H 0.101 0.899 33 H 0.169 0.831 34 H 0.146 0.854 35 H 0.402 0.598 36 H 0.068 0.932 37 H 0.076 0.924 38 H 0.113 0.887 39 H 0.115 0.885 40 H 0.119 0.881 41 H 0.063 0.937 42 H 0.070 0.930 43 H 0.026 0.974 44 H 0.060 0.940 45 H 0.255 0.745 46 H 0.040 0.960 47 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.577 13.011 -11.873 20.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.015 4.015 3 N -0.150 5.150 4 H 0.251 0.749 5 C -0.146 4.146 6 C -0.188 4.188 7 C -0.244 4.244 8 C 0.380 3.620 9 O -0.439 6.439 10 N -0.366 5.366 11 C 0.045 3.955 12 C -0.123 4.123 13 C -0.137 4.137 14 C -0.150 4.150 15 C -0.133 4.133 16 C -0.079 4.079 17 C -0.046 4.046 18 C -0.138 4.138 19 C 0.015 3.985 20 N -0.315 5.315 21 C -0.377 4.377 22 H 0.087 0.913 23 C -0.197 4.197 24 N -0.553 5.553 25 Si 0.735 3.265 26 H -0.209 1.209 27 H -0.216 1.216 28 H -0.210 1.210 29 C 0.080 3.920 30 H 0.095 0.905 31 H 0.079 0.921 32 H 0.120 0.880 33 H 0.186 0.814 34 H 0.164 0.836 35 H 0.237 0.763 36 H 0.086 0.914 37 H 0.094 0.906 38 H 0.131 0.869 39 H 0.133 0.867 40 H 0.137 0.863 41 H 0.081 0.919 42 H 0.089 0.911 43 H 0.044 0.956 44 H 0.078 0.922 45 H 0.065 0.935 46 H 0.058 0.942 47 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -11.254 12.832 -11.800 20.750 hybrid contribution 1.415 0.933 0.274 1.717 sum -9.838 13.766 -11.526 20.473 Atomic orbital electron populations 1.20565 0.87055 1.04046 1.03473 1.20333 0.93676 0.85661 1.01878 1.41590 1.06299 1.08322 1.58824 0.74929 1.21719 0.85592 0.96510 1.10784 1.22108 0.95951 0.93746 1.07044 1.20153 0.93242 0.92107 1.18870 1.17332 0.85223 0.84044 0.75421 1.90711 1.16665 1.84527 1.51948 1.45843 1.10024 1.05471 1.75252 1.20119 0.94057 0.78942 1.02376 1.19826 0.97921 1.00811 0.93783 1.20758 0.97487 0.98732 0.96703 1.20924 0.96503 0.99789 0.97809 1.21178 0.99917 1.00001 0.92225 1.21025 0.95025 0.94340 0.97517 1.19450 0.94437 0.96612 0.94131 1.21033 0.98844 0.99692 0.94201 1.20913 0.86132 0.97013 0.94396 1.43982 0.99897 1.54654 1.32949 1.19134 0.93883 1.02697 1.22019 0.91341 1.24999 0.99377 0.95271 1.00071 1.69989 1.22837 1.10490 1.52029 0.86328 0.81759 0.79354 0.79104 1.20881 1.21599 1.21038 1.19759 0.97745 0.92733 0.81777 0.90453 0.92051 0.88005 0.81364 0.83622 0.76298 0.91371 0.90566 0.86880 0.86737 0.86330 0.91887 0.91144 0.95597 0.92159 0.93478 0.94211 0.88588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.86 9.88 36.01 0.36 -0.50 16 2 C 0.10 1.11 7.18 -81.88 -0.59 0.52 16 3 N -0.55 -4.44 5.90 -9.11 -0.05 -4.50 16 4 H 0.41 1.86 8.96 -40.82 -0.37 1.50 16 5 C -0.02 -0.17 11.89 -16.83 -0.20 -0.37 16 6 C -0.16 -1.83 10.56 -37.50 -0.40 -2.23 16 7 C -0.23 -3.03 6.29 -103.35 -0.65 -3.68 16 8 C 0.59 8.79 7.81 -12.59 -0.10 8.69 16 9 O -0.56 -9.52 14.82 5.25 0.08 -9.44 16 10 N -0.72 -9.95 5.52 -62.61 -0.35 -10.29 16 11 C 0.17 2.40 5.10 -5.19 -0.03 2.38 16 12 C -0.12 -1.91 5.26 -104.46 -0.55 -2.46 16 13 C -0.12 -1.71 9.65 -39.69 -0.38 -2.09 16 14 C -0.13 -1.96 10.05 -39.67 -0.40 -2.36 16 15 C -0.11 -1.98 9.62 -39.46 -0.38 -2.36 16 16 C -0.08 -1.54 5.82 -104.56 -0.61 -2.15 16 17 C -0.05 -0.83 5.76 -104.61 -0.60 -1.43 16 18 C -0.10 -1.79 5.24 -28.05 -0.15 -1.93 16 19 C 0.14 2.99 6.52 -3.75 -0.02 2.96 16 20 N -0.59 -14.75 2.97 -173.95 -0.52 -15.26 16 21 C -0.25 -6.72 9.69 -15.06 -0.15 -6.86 16 22 H 0.07 1.81 7.88 -52.49 -0.41 1.40 16 23 C 0.00 0.03 4.99 -17.43 -0.09 -0.06 16 24 N -0.91 -25.82 11.10 55.49 0.62 -25.21 16 25 Si 0.90 21.44 29.58 -169.99 -5.03 16.41 16 26 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 27 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 28 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 29 C 0.21 4.88 4.85 -5.05 -0.02 4.86 16 30 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 32 H 0.10 1.14 6.47 -51.93 -0.34 0.80 16 33 H 0.17 0.96 8.06 -52.49 -0.42 0.53 16 34 H 0.15 1.50 7.70 -52.49 -0.40 1.09 16 35 H 0.40 5.34 7.59 -40.82 -0.31 5.03 16 36 H 0.07 0.94 7.99 -51.93 -0.41 0.52 16 37 H 0.08 1.15 6.34 -51.93 -0.33 0.82 16 38 H 0.11 1.38 8.03 -52.49 -0.42 0.96 16 39 H 0.11 1.39 8.06 -52.49 -0.42 0.97 16 40 H 0.12 1.94 8.05 -52.49 -0.42 1.52 16 41 H 0.06 1.03 6.25 -51.93 -0.32 0.71 16 42 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 43 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 44 H 0.06 1.23 7.96 -51.93 -0.41 0.82 16 45 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 46 H 0.04 1.02 8.14 -51.93 -0.42 0.59 16 47 H 0.10 2.52 6.34 -51.93 -0.33 2.19 16 LS Contribution 382.05 15.07 5.76 5.76 Total: -1.00 -32.24 382.05 -11.03 -43.27 By element: Atomic # 1 Polarization: 14.94 SS G_CDS: -6.58 Total: 8.37 kcal Atomic # 6 Polarization: -4.14 SS G_CDS: -4.95 Total: -9.10 kcal Atomic # 7 Polarization: -54.96 SS G_CDS: -0.30 Total: -55.26 kcal Atomic # 8 Polarization: -9.52 SS G_CDS: 0.08 Total: -9.44 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.03 Total: 16.41 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -32.24 -11.03 -43.27 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001051284637.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.117 kcal (2) G-P(sol) polarization free energy of solvation -32.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.268 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds