Wall clock time and date at job start Tue Mar 31 2020 22:42:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.34666 * 125.80667 * 2 1 4 4 H 0.97003 * 124.84719 * 0.02562 * 3 2 1 5 5 C 1.36442 * 110.30200 * 180.29810 * 3 2 1 6 6 C 1.34486 * 108.85667 * 359.74621 * 5 3 2 7 7 C 1.36774 * 125.80349 * 179.86589 * 2 1 3 8 8 C 1.47267 * 126.93794 * 359.97438 * 7 2 1 9 9 O 1.21629 * 119.99805 * 359.70688 * 8 7 2 10 10 N 1.34777 * 119.99566 * 179.70552 * 8 7 2 11 11 C 1.46500 * 119.99370 * 180.02562 * 10 8 7 12 12 C 1.50701 * 109.46840 * 180.02562 * 11 10 8 13 13 C 1.37963 * 119.70786 * 260.00049 * 12 11 10 14 14 C 1.38219 * 119.82878 * 180.08233 * 13 12 11 15 15 C 1.38005 * 119.71553 * 0.25137 * 14 13 12 16 16 C 1.38791 * 120.50820 * 359.84802 * 15 14 13 17 17 C 1.37725 * 119.84495 * 359.43784 * 16 15 14 18 18 C 1.50585 * 122.84760 * 181.01908 * 17 16 15 19 19 C 1.52792 * 110.92573 * 340.15887 * 18 17 16 20 20 N 1.47228 * 107.90884 * 47.31703 * 19 18 17 21 21 C 1.36935 * 121.32405 * 115.78037 * 20 19 18 22 22 H 1.07993 * 120.00250 * 335.41000 * 21 20 19 23 23 C 1.38815 * 119.99727 * 155.41237 * 21 20 19 24 24 N 1.31614 * 120.00396 * 344.27561 * 23 21 20 25 25 Si 1.86800 * 119.99740 * 164.27579 * 23 21 20 26 26 H 1.48503 * 109.47442 * 59.99980 * 25 23 21 27 27 H 1.48507 * 109.47021 * 179.97438 * 25 23 21 28 28 H 1.48502 * 109.47297 * 299.99937 * 25 23 21 29 29 C 1.46683 * 117.34667 * 295.80397 * 20 19 18 30 30 H 1.09000 * 109.46840 * 270.13475 * 1 2 3 31 31 H 1.09000 * 109.47013 * 30.13155 * 1 2 3 32 32 H 1.08998 * 109.46827 * 150.12980 * 1 2 3 33 33 H 1.07996 * 125.57118 * 179.77129 * 5 3 2 34 34 H 1.08000 * 126.83675 * 180.02562 * 6 5 3 35 35 H 0.96994 * 120.00306 * 0.02562 * 10 8 7 36 36 H 1.08995 * 109.47690 * 60.00481 * 11 10 8 37 37 H 1.09005 * 109.47224 * 299.99716 * 11 10 8 38 38 H 1.07998 * 120.07986 * 0.09695 * 13 12 11 39 39 H 1.07996 * 120.14274 * 180.28325 * 14 13 12 40 40 H 1.07996 * 119.74488 * 179.86561 * 15 14 13 41 41 H 1.09003 * 109.34213 * 219.67263 * 18 17 16 42 42 H 1.09000 * 108.95041 * 100.39550 * 18 17 16 43 43 H 1.08999 * 109.77311 * 287.71719 * 19 18 17 44 44 H 1.08991 * 109.77768 * 166.92301 * 19 18 17 45 45 H 0.96997 * 120.00250 * 180.02562 * 24 23 21 46 46 H 1.09002 * 109.43425 * 284.32348 * 29 20 19 47 47 H 1.09000 * 109.43209 * 164.46080 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2949 1.0921 0.0000 4 1 1.9735 2.0074 0.0004 5 6 3.6096 0.7274 -0.0067 6 6 3.6883 -0.6151 -0.0054 7 6 2.3071 -1.1093 0.0026 8 6 1.8702 -2.5156 0.0064 9 8 0.6839 -2.7838 0.0129 10 7 2.7850 -3.5054 0.0027 11 6 2.3503 -4.9044 0.0059 12 6 3.5581 -5.8057 0.0013 13 6 3.9763 -6.3824 -1.1802 14 6 5.0828 -7.2108 -1.1870 15 6 5.7586 -7.4592 -0.0097 16 6 5.3376 -6.8813 1.1798 17 6 4.2441 -6.0439 1.1857 18 6 3.7429 -5.3637 2.4322 19 6 4.2524 -6.0753 3.6846 20 7 5.6962 -6.3094 3.5166 21 6 6.6146 -5.7135 4.3392 22 1 6.3684 -4.7918 4.8451 23 6 7.8619 -6.2944 4.5227 24 7 8.0627 -7.5469 4.1719 25 14 9.2556 -5.2981 5.2674 26 1 8.8679 -4.8439 6.6271 27 1 10.4744 -6.1419 5.3568 28 1 9.5324 -4.1169 4.4111 29 6 6.1117 -7.2060 2.4325 30 1 -0.3633 0.0024 1.0277 31 1 -0.3633 0.8888 -0.5159 32 1 -0.3633 -0.8911 -0.5118 33 1 4.4498 1.4059 -0.0116 34 1 4.5890 -1.2110 -0.0092 35 1 3.7310 -3.2915 -0.0022 36 1 1.7475 -5.0997 -0.8809 37 1 1.7562 -5.0983 0.8990 38 1 3.4406 -6.1869 -2.0974 39 1 5.4173 -7.6612 -2.1098 40 1 6.6218 -8.1081 -0.0141 41 1 2.6529 -5.3711 2.4341 42 1 4.0944 -4.3319 2.4381 43 1 3.7358 -7.0277 3.8035 44 1 4.0798 -5.4496 4.5602 45 1 8.9342 -7.9529 4.3005 46 1 5.9174 -8.2389 2.7216 47 1 7.1776 -7.0773 2.2439 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001051284637.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:42:52 Heat of formation + Delta-G solvation = 30.727975 kcal Electronic energy + Delta-G solvation = -29033.046969 eV Core-core repulsion = 25180.611662 eV Total energy + Delta-G solvation = -3852.435306 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.13308 -41.09155 -39.83019 -37.63250 -36.00830 -34.45262 -33.23684 -32.41171 -31.86896 -31.76231 -30.26149 -27.72361 -27.39292 -26.60431 -24.79975 -23.75945 -23.36844 -21.83874 -21.39174 -20.64788 -20.38836 -18.63655 -18.56653 -17.49901 -16.88348 -16.81365 -16.69735 -16.48120 -16.01219 -15.88347 -15.41649 -15.15111 -14.95539 -14.69614 -14.52918 -14.21022 -14.12188 -14.01256 -13.87313 -13.56310 -13.49916 -13.38633 -13.33515 -13.24195 -12.80039 -12.70819 -12.52290 -12.45112 -12.35589 -12.18237 -11.84227 -11.59986 -11.32292 -10.92514 -10.66337 -10.08409 -9.69683 -9.53533 -9.30710 -9.08342 -8.77181 -7.90102 -5.32895 0.37759 0.58093 0.78740 1.46934 1.49341 1.55801 1.56244 2.21048 2.50126 2.57953 2.62009 3.01455 3.26670 3.62234 3.71990 3.94954 3.95607 4.04741 4.11559 4.17974 4.32870 4.33612 4.36093 4.41892 4.56800 4.63564 4.70200 4.75577 4.76228 4.79641 4.84527 4.98446 5.00573 5.10053 5.13356 5.16743 5.19028 5.31002 5.39937 5.45719 5.51952 5.59460 5.65488 5.72278 5.81437 5.96320 6.00672 6.18386 6.32102 6.63809 6.73866 7.10767 7.37769 7.79415 8.35020 9.18619 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010660 B = 0.003312 C = 0.002800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2626.121050 B = 8451.437459 C = 9998.316826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C 0.100 3.900 3 N -0.538 5.538 4 H 0.433 0.567 5 C -0.003 4.003 6 C -0.192 4.192 7 C -0.271 4.271 8 C 0.586 3.414 9 O -0.588 6.588 10 N -0.712 5.712 11 C 0.174 3.826 12 C -0.114 4.114 13 C -0.105 4.105 14 C -0.120 4.120 15 C -0.123 4.123 16 C -0.107 4.107 17 C -0.059 4.059 18 C -0.084 4.084 19 C 0.138 3.862 20 N -0.610 5.610 21 C -0.262 4.262 22 H 0.070 0.930 23 C -0.051 4.051 24 N -0.938 5.938 25 Si 0.970 3.030 26 H -0.275 1.275 27 H -0.293 1.293 28 H -0.278 1.278 29 C 0.222 3.778 30 H 0.079 0.921 31 H 0.092 0.908 32 H 0.078 0.922 33 H 0.204 0.796 34 H 0.146 0.854 35 H 0.405 0.595 36 H 0.080 0.920 37 H 0.067 0.933 38 H 0.148 0.852 39 H 0.151 0.849 40 H 0.119 0.881 41 H 0.082 0.918 42 H 0.066 0.934 43 H 0.022 0.978 44 H 0.061 0.939 45 H 0.251 0.749 46 H 0.006 0.994 47 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.253 15.605 -13.866 23.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.019 4.019 3 N -0.135 5.135 4 H 0.273 0.727 5 C -0.131 4.131 6 C -0.215 4.215 7 C -0.281 4.281 8 C 0.377 3.623 9 O -0.471 6.471 10 N -0.362 5.362 11 C 0.051 3.949 12 C -0.115 4.115 13 C -0.123 4.123 14 C -0.138 4.138 15 C -0.142 4.142 16 C -0.108 4.108 17 C -0.059 4.059 18 C -0.122 4.122 19 C 0.013 3.987 20 N -0.333 5.333 21 C -0.392 4.392 22 H 0.088 0.912 23 C -0.246 4.246 24 N -0.585 5.585 25 Si 0.798 3.202 26 H -0.201 1.201 27 H -0.219 1.219 28 H -0.204 1.204 29 C 0.096 3.904 30 H 0.097 0.903 31 H 0.111 0.889 32 H 0.097 0.903 33 H 0.220 0.780 34 H 0.164 0.836 35 H 0.241 0.759 36 H 0.098 0.902 37 H 0.085 0.915 38 H 0.165 0.835 39 H 0.168 0.832 40 H 0.137 0.863 41 H 0.100 0.900 42 H 0.084 0.916 43 H 0.040 0.960 44 H 0.080 0.920 45 H 0.060 0.940 46 H 0.023 0.977 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -11.947 15.462 -13.799 23.921 hybrid contribution 1.554 0.158 0.841 1.774 sum -10.393 15.620 -12.958 22.801 Atomic orbital electron populations 1.20540 0.86172 1.04437 1.03682 1.20539 0.94431 0.85963 1.00991 1.41596 1.05877 1.08771 1.57270 0.72656 1.22228 0.86533 0.96193 1.08135 1.22255 0.95317 0.95058 1.08903 1.20234 0.94768 0.91638 1.21483 1.17682 0.84848 0.84998 0.74760 1.90686 1.17742 1.85093 1.53536 1.45786 1.10110 1.05197 1.75062 1.20044 0.93357 0.78996 1.02537 1.19864 0.97701 1.00682 0.93216 1.21174 0.96852 0.96936 0.97374 1.21267 0.95715 0.98865 0.97912 1.21281 1.00432 1.00036 0.92442 1.20677 0.96321 0.97225 0.96621 1.19451 0.94527 0.96804 0.95145 1.20830 0.99732 0.98824 0.92851 1.21050 0.84309 0.97196 0.96191 1.44229 1.01211 1.54666 1.33229 1.19470 0.94747 1.02854 1.22087 0.91187 1.25778 1.01558 0.96185 1.01053 1.70163 1.22920 1.11960 1.53414 0.85302 0.78511 0.77863 0.78550 1.20078 1.21893 1.20355 1.19326 0.96578 0.90957 0.83541 0.90281 0.88912 0.90313 0.77957 0.83600 0.75948 0.90193 0.91458 0.83462 0.83153 0.86286 0.89999 0.91592 0.95971 0.92019 0.93971 0.97666 0.91948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.52 9.88 71.24 0.70 -0.82 16 2 C 0.10 1.99 7.18 41.78 0.30 2.29 16 3 N -0.54 -7.01 5.90 -182.72 -1.08 -8.09 16 4 H 0.43 2.30 8.96 -92.71 -0.83 1.46 16 5 C 0.00 -0.05 11.89 83.12 0.99 0.94 16 6 C -0.19 -3.99 10.56 23.62 0.25 -3.74 16 7 C -0.27 -6.79 6.29 -19.04 -0.12 -6.91 16 8 C 0.59 17.19 7.81 86.62 0.68 17.87 16 9 O -0.59 -20.00 14.82 -4.12 -0.06 -20.06 16 10 N -0.71 -19.13 5.52 -470.25 -2.59 -21.72 16 11 C 0.17 4.70 5.10 85.63 0.44 5.13 16 12 C -0.11 -3.34 5.26 -19.76 -0.10 -3.45 16 13 C -0.11 -2.68 9.65 22.20 0.21 -2.46 16 14 C -0.12 -3.20 10.05 22.21 0.22 -2.98 16 15 C -0.12 -4.23 9.62 22.35 0.22 -4.02 16 16 C -0.11 -4.37 5.82 -19.82 -0.12 -4.49 16 17 C -0.06 -2.12 5.76 -19.85 -0.11 -2.24 16 18 C -0.08 -3.06 5.24 29.74 0.16 -2.90 16 19 C 0.14 6.00 6.52 86.17 0.56 6.56 16 20 N -0.61 -31.74 2.97 -704.24 -2.09 -33.84 16 21 C -0.26 -14.64 9.69 84.03 0.81 -13.83 16 22 H 0.07 3.79 7.88 -2.91 -0.02 3.77 16 23 C -0.05 -2.85 4.99 84.86 0.42 -2.43 16 24 N -0.94 -55.74 11.10 21.65 0.24 -55.50 16 25 Si 0.97 44.99 29.58 68.60 2.03 47.02 16 26 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 27 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 28 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 29 C 0.22 11.19 4.85 85.63 0.42 11.60 16 30 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 31 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 32 H 0.08 1.73 6.47 -2.39 -0.02 1.71 16 33 H 0.20 1.45 8.06 -2.91 -0.02 1.43 16 34 H 0.15 2.88 7.70 -2.91 -0.02 2.86 16 35 H 0.41 10.42 7.59 -92.71 -0.70 9.72 16 36 H 0.08 2.01 7.99 -2.39 -0.02 1.99 16 37 H 0.07 1.96 6.34 -2.38 -0.02 1.95 16 38 H 0.15 2.85 8.03 -2.91 -0.02 2.82 16 39 H 0.15 2.99 8.06 -2.91 -0.02 2.97 16 40 H 0.12 3.97 8.05 -2.91 -0.02 3.95 16 41 H 0.08 2.65 6.25 -2.39 -0.01 2.64 16 42 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 43 H 0.02 0.97 8.14 -2.39 -0.02 0.95 16 44 H 0.06 2.59 7.96 -2.39 -0.02 2.57 16 45 H 0.25 14.44 8.31 -92.71 -0.77 13.67 16 46 H 0.01 0.31 8.14 -2.39 -0.02 0.29 16 47 H 0.06 3.50 6.34 -2.39 -0.02 3.48 16 Total: -1.00 -73.36 382.05 1.85 -71.52 By element: Atomic # 1 Polarization: 27.06 SS G_CDS: -0.52 Total: 26.54 kcal Atomic # 6 Polarization: -11.79 SS G_CDS: 5.92 Total: -5.87 kcal Atomic # 7 Polarization: -113.62 SS G_CDS: -5.53 Total: -119.14 kcal Atomic # 8 Polarization: -20.00 SS G_CDS: -0.06 Total: -20.06 kcal Atomic # 14 Polarization: 44.99 SS G_CDS: 2.03 Total: 47.02 kcal Total: -73.36 1.85 -71.52 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001051284637.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.244 kcal (2) G-P(sol) polarization free energy of solvation -73.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.516 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds