Wall clock time and date at job start Tue Mar 31 2020 22:57:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.39846 * 126.45470 * 2 1 4 4 C 1.35451 * 107.86205 * 180.26203 * 3 2 1 5 5 N 1.35533 * 108.87247 * 359.74436 * 4 3 2 6 6 H 0.96998 * 125.67692 * 179.97438 * 5 4 3 7 7 C 1.37647 * 108.64628 * 359.97438 * 5 4 3 8 8 C 1.46681 * 126.23506 * 180.02562 * 7 5 4 9 9 O 1.21691 * 119.99956 * 180.02562 * 8 7 5 10 10 N 1.34779 * 119.99815 * 0.02562 * 8 7 5 11 11 C 1.46496 * 119.99755 * 180.02562 * 10 8 7 12 12 C 1.50700 * 109.46937 * 179.97438 * 11 10 8 13 13 C 1.37955 * 119.71355 * 259.99822 * 12 11 10 14 14 C 1.38220 * 119.82707 * 180.02562 * 13 12 11 15 15 C 1.38000 * 119.72057 * 0.26614 * 14 13 12 16 16 C 1.38790 * 120.50179 * 359.83801 * 15 14 13 17 17 C 1.37715 * 119.84900 * 359.43756 * 16 15 14 18 18 C 1.50600 * 122.84695 * 181.02031 * 17 16 15 19 19 C 1.52785 * 110.92323 * 340.16164 * 18 17 16 20 20 N 1.47229 * 107.91160 * 47.32132 * 19 18 17 21 21 C 1.36933 * 121.32779 * 115.77672 * 20 19 18 22 22 H 1.07995 * 120.00308 * 335.41180 * 21 20 19 23 23 C 1.38815 * 119.99795 * 155.41637 * 21 20 19 24 24 N 1.31614 * 120.00396 * 344.26491 * 23 21 20 25 25 Si 1.86800 * 119.99740 * 164.26509 * 23 21 20 26 26 H 1.48497 * 109.47199 * 359.97438 * 25 23 21 27 27 H 1.48499 * 109.47421 * 119.99896 * 25 23 21 28 28 H 1.48508 * 109.47254 * 239.99806 * 25 23 21 29 29 C 1.46682 * 117.34186 * 295.79756 * 20 19 18 30 30 H 1.08996 * 109.47090 * 270.17654 * 1 2 3 31 31 H 1.08999 * 109.47276 * 30.18577 * 1 2 3 32 32 H 1.09001 * 109.46819 * 150.18085 * 1 2 3 33 33 H 1.07997 * 126.06486 * 0.02562 * 3 2 1 34 34 H 1.07997 * 125.56127 * 179.71630 * 4 3 2 35 35 H 0.96994 * 119.99909 * 359.97438 * 10 8 7 36 36 H 1.09000 * 109.47462 * 60.00322 * 11 10 8 37 37 H 1.09000 * 109.47380 * 299.99669 * 11 10 8 38 38 H 1.07996 * 120.08300 * 0.10347 * 13 12 11 39 39 H 1.08004 * 120.13620 * 180.27713 * 14 13 12 40 40 H 1.07996 * 119.74635 * 179.86029 * 15 14 13 41 41 H 1.09002 * 109.33774 * 219.67263 * 18 17 16 42 42 H 1.09003 * 108.94722 * 100.40150 * 18 17 16 43 43 H 1.09001 * 109.77859 * 287.71506 * 19 18 17 44 44 H 1.09003 * 109.77252 * 166.92290 * 19 18 17 45 45 H 0.96997 * 120.00250 * 180.02562 * 24 23 21 46 46 H 1.09002 * 109.43914 * 284.32495 * 29 20 19 47 47 H 1.09009 * 109.43290 * 164.46225 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3380 1.1248 0.0000 4 6 3.6218 0.6930 -0.0059 5 7 3.6284 -0.6624 -0.0039 6 1 4.4191 -1.2242 -0.0074 7 6 2.3264 -1.1088 0.0040 8 6 1.8900 -2.5092 0.0091 9 8 0.7028 -2.7765 0.0155 10 7 2.8039 -3.4998 0.0066 11 6 2.3680 -4.8984 0.0111 12 6 3.5751 -5.8007 0.0064 13 6 3.9922 -6.3787 -1.1747 14 6 5.0986 -7.2071 -1.1816 15 6 5.7754 -7.4545 -0.0046 16 6 5.3553 -6.8753 1.1846 17 6 4.2621 -6.0378 1.1906 18 6 3.7620 -5.3562 2.4369 19 6 4.2725 -6.0666 3.6895 20 7 5.7161 -6.3010 3.5205 21 6 6.6352 -5.7044 4.3417 22 1 6.3896 -4.7820 4.8470 23 6 7.8827 -6.2851 4.5247 24 7 8.0831 -7.5380 4.1752 25 14 9.2772 -5.2881 5.2670 26 1 8.7974 -3.9161 5.5712 27 1 9.7402 -5.9398 6.5184 28 1 10.4027 -5.2155 4.3009 29 6 6.1306 -7.1988 2.4371 30 1 -0.3633 0.0032 1.0276 31 1 -0.3634 0.8883 -0.5167 32 1 -0.3633 -0.8916 -0.5110 33 1 2.0136 2.1549 0.0004 34 1 4.4971 1.3254 -0.0117 35 1 3.7501 -3.2867 0.0011 36 1 1.7653 -5.0941 -0.8758 37 1 1.7736 -5.0909 0.9042 38 1 3.4563 -6.1834 -2.0918 39 1 5.4322 -7.6586 -2.1042 40 1 6.6386 -8.1034 -0.0091 41 1 2.6720 -5.3635 2.4397 42 1 4.1135 -4.3244 2.4414 43 1 3.7559 -7.0188 3.8099 44 1 4.1006 -5.4399 4.5647 45 1 8.9547 -7.9439 4.3034 46 1 5.9365 -8.2313 2.7273 47 1 7.1964 -7.0704 2.2474 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001051288267.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:57:38 Heat of formation + Delta-G solvation = 50.168481 kcal Electronic energy + Delta-G solvation = -29095.205044 eV Core-core repulsion = 25243.612741 eV Total energy + Delta-G solvation = -3851.592303 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.47058 -39.88522 -38.80586 -36.05852 -35.07337 -32.93955 -32.57688 -31.77394 -30.20575 -29.94147 -28.79899 -27.15410 -25.71880 -25.60896 -23.23325 -22.36530 -22.16498 -20.86345 -20.54898 -19.31069 -19.04177 -18.69683 -16.85073 -16.16511 -16.01787 -15.66899 -15.47015 -15.02737 -14.86074 -14.35887 -14.03849 -13.98227 -13.79622 -13.65350 -13.35510 -13.09412 -12.95417 -12.74049 -12.67104 -12.61598 -12.38273 -12.35230 -12.01764 -11.70084 -11.58491 -11.32354 -11.02242 -10.92423 -10.79876 -10.41088 -10.22210 -10.06498 -9.95047 -9.79673 -9.16766 -8.93561 -8.75904 -8.34585 -8.28562 -7.95511 -6.85553 -5.90875 -3.30642 1.35572 1.53654 1.80072 2.58551 2.94620 3.20461 3.29600 3.32082 3.37798 3.39497 4.14846 4.39323 4.71451 4.84910 4.88682 5.05515 5.08383 5.17928 5.19881 5.25522 5.35630 5.45567 5.48100 5.62151 5.68202 5.76836 5.77821 5.80546 5.92595 6.00622 6.04387 6.07762 6.15472 6.21506 6.33165 6.41191 6.48769 6.57670 6.59560 6.77379 6.78003 6.81317 6.88136 7.03822 7.14166 7.19509 7.37689 7.44967 7.53962 7.68578 8.11901 8.27297 9.08258 9.70524 10.28583 11.19601 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010731 B = 0.003334 C = 0.002820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2608.732265 B = 8397.052505 C = 9926.945296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C -0.076 4.076 3 C -0.214 4.214 4 C 0.027 3.973 5 N -0.540 5.540 6 H 0.418 0.582 7 C -0.059 4.059 8 C 0.588 3.412 9 O -0.531 6.531 10 N -0.722 5.722 11 C 0.168 3.832 12 C -0.126 4.126 13 C -0.118 4.118 14 C -0.131 4.131 15 C -0.113 4.113 16 C -0.077 4.077 17 C -0.047 4.047 18 C -0.099 4.099 19 C 0.141 3.859 20 N -0.593 5.593 21 C -0.249 4.249 22 H 0.070 0.930 23 C 0.001 3.999 24 N -0.907 5.907 25 Si 0.904 3.096 26 H -0.278 1.278 27 H -0.289 1.289 28 H -0.289 1.289 29 C 0.205 3.795 30 H 0.066 0.934 31 H 0.060 0.940 32 H 0.079 0.921 33 H 0.142 0.858 34 H 0.171 0.829 35 H 0.396 0.604 36 H 0.072 0.928 37 H 0.080 0.920 38 H 0.114 0.886 39 H 0.116 0.884 40 H 0.120 0.880 41 H 0.063 0.937 42 H 0.067 0.933 43 H 0.027 0.973 44 H 0.060 0.940 45 H 0.255 0.745 46 H 0.041 0.959 47 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.644 10.596 -11.858 18.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.085 4.085 3 C -0.239 4.239 4 C -0.110 4.110 5 N -0.135 5.135 6 H 0.255 0.745 7 C -0.172 4.172 8 C 0.376 3.624 9 O -0.408 6.408 10 N -0.373 5.373 11 C 0.045 3.955 12 C -0.127 4.127 13 C -0.136 4.136 14 C -0.150 4.150 15 C -0.132 4.132 16 C -0.078 4.078 17 C -0.047 4.047 18 C -0.137 4.137 19 C 0.015 3.985 20 N -0.315 5.315 21 C -0.378 4.378 22 H 0.088 0.912 23 C -0.197 4.197 24 N -0.552 5.552 25 Si 0.734 3.266 26 H -0.203 1.203 27 H -0.216 1.216 28 H -0.215 1.215 29 C 0.079 3.921 30 H 0.085 0.915 31 H 0.078 0.922 32 H 0.098 0.902 33 H 0.160 0.840 34 H 0.188 0.812 35 H 0.229 0.771 36 H 0.090 0.910 37 H 0.098 0.902 38 H 0.132 0.868 39 H 0.134 0.866 40 H 0.138 0.862 41 H 0.082 0.918 42 H 0.085 0.915 43 H 0.045 0.955 44 H 0.079 0.921 45 H 0.065 0.935 46 H 0.059 0.941 47 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -9.244 10.154 -11.789 18.098 hybrid contribution 1.925 0.249 0.274 1.960 sum -7.319 10.403 -11.515 17.158 Atomic orbital electron populations 1.20334 0.89360 1.02737 1.02219 1.19950 0.95861 0.90772 1.01876 1.20794 0.91840 0.98763 1.12491 1.22018 0.99592 0.82984 1.06358 1.42001 1.07288 1.07373 1.56882 0.74504 1.20246 0.83760 0.93560 1.19597 1.17055 0.85843 0.82987 0.76502 1.90799 1.15967 1.83304 1.50739 1.45988 1.09435 1.06206 1.75622 1.20171 0.94253 0.78276 1.02768 1.19805 0.97921 1.01073 0.93870 1.20767 0.97472 0.98719 0.96691 1.20944 0.96428 0.99688 0.97890 1.21204 0.99911 0.99857 0.92192 1.21044 0.94991 0.94219 0.97564 1.19460 0.94467 0.96736 0.94073 1.21034 0.98892 0.99473 0.94337 1.20914 0.86185 0.97102 0.94309 1.44003 0.99887 1.54570 1.33046 1.19208 0.93780 1.02701 1.22135 0.91249 1.25013 0.99415 0.95289 0.99999 1.70004 1.22718 1.10485 1.51987 0.86190 0.82334 0.79584 0.78489 1.20284 1.21592 1.21543 1.19776 0.97741 0.92810 0.81764 0.91542 0.92151 0.90193 0.84037 0.81221 0.77059 0.91006 0.90213 0.86818 0.86624 0.86215 0.91826 0.91455 0.95487 0.92096 0.93515 0.94101 0.88535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.00 9.83 36.01 0.35 -0.64 16 2 C -0.08 -0.92 6.21 -104.15 -0.65 -1.56 16 3 C -0.21 -2.14 10.76 -39.98 -0.43 -2.57 16 4 C 0.03 0.23 11.89 -16.91 -0.20 0.03 16 5 N -0.54 -5.18 5.99 -9.39 -0.06 -5.24 16 6 H 0.42 3.14 8.19 -40.82 -0.33 2.81 16 7 C -0.06 -0.73 7.06 -81.98 -0.58 -1.31 16 8 C 0.59 8.16 7.79 -12.85 -0.10 8.06 16 9 O -0.53 -8.76 14.81 5.20 0.08 -8.68 16 10 N -0.72 -8.95 5.51 -62.80 -0.35 -9.30 16 11 C 0.17 2.21 5.10 -5.20 -0.03 2.18 16 12 C -0.13 -1.83 5.26 -104.47 -0.55 -2.38 16 13 C -0.12 -1.59 9.65 -39.69 -0.38 -1.97 16 14 C -0.13 -1.84 10.05 -39.68 -0.40 -2.24 16 15 C -0.11 -1.87 9.62 -39.46 -0.38 -2.25 16 16 C -0.08 -1.46 5.82 -104.55 -0.61 -2.07 16 17 C -0.05 -0.80 5.76 -104.60 -0.60 -1.41 16 18 C -0.10 -1.69 5.24 -28.04 -0.15 -1.84 16 19 C 0.14 2.88 6.52 -3.75 -0.02 2.85 16 20 N -0.59 -14.33 2.97 -173.93 -0.52 -14.85 16 21 C -0.25 -6.58 9.69 -15.06 -0.15 -6.73 16 22 H 0.07 1.80 7.88 -52.49 -0.41 1.39 16 23 C 0.00 0.03 4.99 -17.43 -0.09 -0.06 16 24 N -0.91 -25.30 11.10 55.49 0.62 -24.69 16 25 Si 0.90 21.01 29.58 -169.99 -5.03 15.99 16 26 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 27 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 28 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 29 C 0.20 4.72 4.85 -5.04 -0.02 4.69 16 30 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.08 1.01 6.49 -51.93 -0.34 0.67 16 33 H 0.14 1.11 8.06 -52.49 -0.42 0.69 16 34 H 0.17 0.90 8.06 -52.49 -0.42 0.48 16 35 H 0.40 4.42 7.59 -40.82 -0.31 4.11 16 36 H 0.07 0.91 7.99 -51.93 -0.41 0.49 16 37 H 0.08 1.12 6.34 -51.93 -0.33 0.79 16 38 H 0.11 1.29 8.02 -52.49 -0.42 0.86 16 39 H 0.12 1.32 8.06 -52.48 -0.42 0.90 16 40 H 0.12 1.87 8.05 -52.49 -0.42 1.45 16 41 H 0.06 0.99 6.26 -51.93 -0.32 0.66 16 42 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 43 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 44 H 0.06 1.21 7.96 -51.93 -0.41 0.79 16 45 H 0.25 6.87 8.31 -40.82 -0.34 6.53 16 46 H 0.04 1.02 8.14 -51.93 -0.42 0.60 16 47 H 0.10 2.46 6.34 -51.92 -0.33 2.13 16 LS Contribution 381.68 15.07 5.75 5.75 Total: -1.00 -31.15 381.68 -11.05 -42.21 By element: Atomic # 1 Polarization: 14.58 SS G_CDS: -6.57 Total: 8.01 kcal Atomic # 6 Polarization: -4.22 SS G_CDS: -4.98 Total: -9.20 kcal Atomic # 7 Polarization: -53.77 SS G_CDS: -0.30 Total: -54.07 kcal Atomic # 8 Polarization: -8.76 SS G_CDS: 0.08 Total: -8.68 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.03 Total: 15.99 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -31.15 -11.05 -42.21 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001051288267.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.374 kcal (2) G-P(sol) polarization free energy of solvation -31.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.206 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds