Wall clock time and date at job start Tue Mar 31 2020 22:57:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.39846 * 126.45470 * 2 1 4 4 C 1.35451 * 107.86205 * 180.26203 * 3 2 1 5 5 N 1.35533 * 108.87247 * 359.74436 * 4 3 2 6 6 H 0.96998 * 125.67692 * 179.97438 * 5 4 3 7 7 C 1.37647 * 108.64628 * 359.97438 * 5 4 3 8 8 C 1.46681 * 126.23506 * 180.02562 * 7 5 4 9 9 O 1.21691 * 119.99956 * 180.02562 * 8 7 5 10 10 N 1.34779 * 119.99815 * 0.02562 * 8 7 5 11 11 C 1.46496 * 119.99755 * 180.02562 * 10 8 7 12 12 C 1.50700 * 109.46937 * 179.97438 * 11 10 8 13 13 C 1.37955 * 119.71355 * 259.99822 * 12 11 10 14 14 C 1.38220 * 119.82707 * 180.02562 * 13 12 11 15 15 C 1.38000 * 119.72057 * 0.26614 * 14 13 12 16 16 C 1.38790 * 120.50179 * 359.83801 * 15 14 13 17 17 C 1.37715 * 119.84900 * 359.43756 * 16 15 14 18 18 C 1.50600 * 122.84695 * 181.02031 * 17 16 15 19 19 C 1.52785 * 110.92323 * 340.16164 * 18 17 16 20 20 N 1.47229 * 107.91160 * 47.32132 * 19 18 17 21 21 C 1.36933 * 121.32779 * 115.77672 * 20 19 18 22 22 H 1.07995 * 120.00308 * 335.41180 * 21 20 19 23 23 C 1.38815 * 119.99795 * 155.41637 * 21 20 19 24 24 N 1.31614 * 120.00396 * 344.26491 * 23 21 20 25 25 Si 1.86800 * 119.99740 * 164.26509 * 23 21 20 26 26 H 1.48497 * 109.47199 * 359.97438 * 25 23 21 27 27 H 1.48499 * 109.47421 * 119.99896 * 25 23 21 28 28 H 1.48508 * 109.47254 * 239.99806 * 25 23 21 29 29 C 1.46682 * 117.34186 * 295.79756 * 20 19 18 30 30 H 1.08996 * 109.47090 * 270.17654 * 1 2 3 31 31 H 1.08999 * 109.47276 * 30.18577 * 1 2 3 32 32 H 1.09001 * 109.46819 * 150.18085 * 1 2 3 33 33 H 1.07997 * 126.06486 * 0.02562 * 3 2 1 34 34 H 1.07997 * 125.56127 * 179.71630 * 4 3 2 35 35 H 0.96994 * 119.99909 * 359.97438 * 10 8 7 36 36 H 1.09000 * 109.47462 * 60.00322 * 11 10 8 37 37 H 1.09000 * 109.47380 * 299.99669 * 11 10 8 38 38 H 1.07996 * 120.08300 * 0.10347 * 13 12 11 39 39 H 1.08004 * 120.13620 * 180.27713 * 14 13 12 40 40 H 1.07996 * 119.74635 * 179.86029 * 15 14 13 41 41 H 1.09002 * 109.33774 * 219.67263 * 18 17 16 42 42 H 1.09003 * 108.94722 * 100.40150 * 18 17 16 43 43 H 1.09001 * 109.77859 * 287.71506 * 19 18 17 44 44 H 1.09003 * 109.77252 * 166.92290 * 19 18 17 45 45 H 0.96997 * 120.00250 * 180.02562 * 24 23 21 46 46 H 1.09002 * 109.43914 * 284.32495 * 29 20 19 47 47 H 1.09009 * 109.43290 * 164.46225 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3380 1.1248 0.0000 4 6 3.6218 0.6930 -0.0059 5 7 3.6284 -0.6624 -0.0039 6 1 4.4191 -1.2242 -0.0074 7 6 2.3264 -1.1088 0.0040 8 6 1.8900 -2.5092 0.0091 9 8 0.7028 -2.7765 0.0155 10 7 2.8039 -3.4998 0.0066 11 6 2.3680 -4.8984 0.0111 12 6 3.5751 -5.8007 0.0064 13 6 3.9922 -6.3787 -1.1747 14 6 5.0986 -7.2071 -1.1816 15 6 5.7754 -7.4545 -0.0046 16 6 5.3553 -6.8753 1.1846 17 6 4.2621 -6.0378 1.1906 18 6 3.7620 -5.3562 2.4369 19 6 4.2725 -6.0666 3.6895 20 7 5.7161 -6.3010 3.5205 21 6 6.6352 -5.7044 4.3417 22 1 6.3896 -4.7820 4.8470 23 6 7.8827 -6.2851 4.5247 24 7 8.0831 -7.5380 4.1752 25 14 9.2772 -5.2881 5.2670 26 1 8.7974 -3.9161 5.5712 27 1 9.7402 -5.9398 6.5184 28 1 10.4027 -5.2155 4.3009 29 6 6.1306 -7.1988 2.4371 30 1 -0.3633 0.0032 1.0276 31 1 -0.3634 0.8883 -0.5167 32 1 -0.3633 -0.8916 -0.5110 33 1 2.0136 2.1549 0.0004 34 1 4.4971 1.3254 -0.0117 35 1 3.7501 -3.2867 0.0011 36 1 1.7653 -5.0941 -0.8758 37 1 1.7736 -5.0909 0.9042 38 1 3.4563 -6.1834 -2.0918 39 1 5.4322 -7.6586 -2.1042 40 1 6.6386 -8.1034 -0.0091 41 1 2.6720 -5.3635 2.4397 42 1 4.1135 -4.3244 2.4414 43 1 3.7559 -7.0188 3.8099 44 1 4.1006 -5.4399 4.5647 45 1 8.9547 -7.9439 4.3034 46 1 5.9365 -8.2313 2.7273 47 1 7.1964 -7.0704 2.2474 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001051288267.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:57:37 Heat of formation + Delta-G solvation = 32.184322 kcal Electronic energy + Delta-G solvation = -29095.984896 eV Core-core repulsion = 25243.612741 eV Total energy + Delta-G solvation = -3852.372154 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.27929 -41.13247 -39.90523 -37.68450 -36.20728 -34.51475 -33.61431 -33.03689 -31.80501 -30.94891 -30.11260 -28.08202 -27.45069 -26.73965 -24.84118 -23.79712 -23.26070 -21.89297 -21.51181 -20.66405 -20.19424 -19.53668 -18.67399 -17.44369 -17.04409 -16.81264 -16.64008 -16.47305 -16.13557 -15.93763 -15.43110 -15.07376 -14.98000 -14.70132 -14.56801 -14.49763 -14.16462 -13.98016 -13.81073 -13.58431 -13.55022 -13.39395 -13.27576 -13.15927 -12.84557 -12.79100 -12.55473 -12.53071 -12.39622 -12.16616 -11.87473 -11.64680 -11.36895 -11.11981 -10.71478 -10.22338 -9.68897 -9.59643 -9.35602 -9.09994 -8.80744 -7.93457 -5.36354 0.31269 0.47488 0.53265 1.44038 1.45773 1.56157 1.84451 2.12840 2.28084 2.35209 2.46963 2.91023 3.23666 3.58166 3.63500 3.89698 3.94161 3.99356 4.12940 4.26731 4.27317 4.30650 4.35963 4.40471 4.51837 4.59656 4.71037 4.74467 4.79859 4.89535 4.91856 4.96260 5.01812 5.08728 5.11798 5.14065 5.18281 5.28897 5.35750 5.42043 5.47559 5.56370 5.60843 5.67371 5.78471 5.92033 6.00569 6.13292 6.28840 6.43274 6.59641 7.07616 7.11182 7.76025 8.31396 9.15458 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010731 B = 0.003334 C = 0.002820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2608.732265 B = 8397.052505 C = 9926.945296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C -0.093 4.093 3 C -0.229 4.229 4 C 0.044 3.956 5 N -0.534 5.534 6 H 0.427 0.573 7 C -0.089 4.089 8 C 0.587 3.413 9 O -0.565 6.565 10 N -0.714 5.714 11 C 0.173 3.827 12 C -0.115 4.115 13 C -0.104 4.104 14 C -0.120 4.120 15 C -0.122 4.122 16 C -0.106 4.106 17 C -0.058 4.058 18 C -0.084 4.084 19 C 0.137 3.863 20 N -0.610 5.610 21 C -0.260 4.260 22 H 0.071 0.929 23 C -0.051 4.051 24 N -0.938 5.938 25 Si 0.969 3.031 26 H -0.266 1.266 27 H -0.292 1.292 28 H -0.289 1.289 29 C 0.221 3.779 30 H 0.063 0.937 31 H 0.079 0.921 32 H 0.059 0.941 33 H 0.161 0.839 34 H 0.209 0.791 35 H 0.403 0.597 36 H 0.084 0.916 37 H 0.071 0.929 38 H 0.149 0.851 39 H 0.150 0.850 40 H 0.119 0.881 41 H 0.083 0.917 42 H 0.067 0.933 43 H 0.022 0.978 44 H 0.061 0.939 45 H 0.251 0.749 46 H 0.005 0.995 47 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.801 12.825 -13.939 20.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.102 4.102 3 C -0.253 4.253 4 C -0.093 4.093 5 N -0.130 5.130 6 H 0.266 0.734 7 C -0.202 4.202 8 C 0.377 3.623 9 O -0.445 6.445 10 N -0.364 5.364 11 C 0.050 3.950 12 C -0.116 4.116 13 C -0.122 4.122 14 C -0.137 4.137 15 C -0.141 4.141 16 C -0.107 4.107 17 C -0.059 4.059 18 C -0.123 4.123 19 C 0.011 3.989 20 N -0.333 5.333 21 C -0.389 4.389 22 H 0.089 0.911 23 C -0.246 4.246 24 N -0.584 5.584 25 Si 0.797 3.203 26 H -0.190 1.190 27 H -0.219 1.219 28 H -0.215 1.215 29 C 0.095 3.905 30 H 0.082 0.918 31 H 0.098 0.902 32 H 0.078 0.922 33 H 0.179 0.821 34 H 0.225 0.775 35 H 0.238 0.762 36 H 0.102 0.898 37 H 0.089 0.911 38 H 0.166 0.834 39 H 0.168 0.832 40 H 0.137 0.863 41 H 0.101 0.899 42 H 0.085 0.915 43 H 0.040 0.960 44 H 0.080 0.920 45 H 0.060 0.940 46 H 0.023 0.977 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -9.402 12.384 -13.878 20.841 hybrid contribution 1.917 -0.415 0.875 2.148 sum -7.485 11.969 -13.003 19.193 Atomic orbital electron populations 1.20302 0.89422 1.02694 1.02016 1.20288 0.96358 0.91726 1.01875 1.21110 0.92104 0.99188 1.12908 1.22683 1.00528 0.82687 1.03372 1.42032 1.06693 1.08006 1.56308 0.73429 1.20100 0.85146 0.92862 1.22064 1.17268 0.85454 0.83748 0.75840 1.90777 1.17296 1.83906 1.52514 1.45865 1.09660 1.05708 1.75191 1.20097 0.93516 0.78370 1.02992 1.19824 0.97645 1.00918 0.93202 1.21180 0.96746 0.96852 0.97410 1.21274 0.95714 0.98832 0.97913 1.21291 1.00412 0.99909 0.92456 1.20666 0.96337 0.97180 0.96548 1.19447 0.94470 0.96858 0.95099 1.20839 0.99796 0.98804 0.92822 1.21056 0.84332 0.97239 0.96236 1.44246 1.01196 1.54564 1.33319 1.19524 0.94569 1.02774 1.22070 0.91127 1.25776 1.01596 0.96184 1.01038 1.70172 1.22836 1.11965 1.53452 0.85179 0.79241 0.78596 0.77272 1.19030 1.21949 1.21549 1.19334 0.96608 0.90949 0.83591 0.91831 0.90178 0.92172 0.82131 0.77462 0.76234 0.89790 0.91089 0.83374 0.83185 0.86341 0.89919 0.91491 0.96025 0.92032 0.93976 0.97737 0.91919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.90 9.83 71.24 0.70 -1.20 16 2 C -0.09 -2.13 6.21 -19.56 -0.12 -2.26 16 3 C -0.23 -3.97 10.76 22.01 0.24 -3.73 16 4 C 0.04 0.62 11.89 83.48 0.99 1.61 16 5 N -0.53 -8.94 5.99 -183.63 -1.10 -10.05 16 6 H 0.43 5.33 8.19 -92.71 -0.76 4.57 16 7 C -0.09 -2.10 7.06 40.35 0.28 -1.81 16 8 C 0.59 15.72 7.79 86.45 0.67 16.39 16 9 O -0.57 -18.51 14.81 -4.32 -0.06 -18.57 16 10 N -0.71 -16.41 5.51 -470.82 -2.60 -19.00 16 11 C 0.17 4.17 5.10 85.63 0.44 4.60 16 12 C -0.12 -3.06 5.26 -19.76 -0.10 -3.16 16 13 C -0.10 -2.39 9.65 22.20 0.21 -2.17 16 14 C -0.12 -2.96 10.05 22.21 0.22 -2.73 16 15 C -0.12 -3.96 9.62 22.35 0.22 -3.74 16 16 C -0.11 -4.10 5.82 -19.82 -0.12 -4.22 16 17 C -0.06 -1.96 5.76 -19.85 -0.11 -2.07 16 18 C -0.08 -2.86 5.24 29.75 0.16 -2.70 16 19 C 0.14 5.71 6.52 86.17 0.56 6.27 16 20 N -0.61 -30.68 2.97 -704.21 -2.09 -32.77 16 21 C -0.26 -14.11 9.69 84.03 0.81 -13.30 16 22 H 0.07 3.73 7.88 -2.91 -0.02 3.70 16 23 C -0.05 -2.80 4.99 84.86 0.42 -2.37 16 24 N -0.94 -54.66 11.10 21.65 0.24 -54.42 16 25 Si 0.97 44.02 29.58 68.60 2.03 46.05 16 26 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 27 H -0.29 -13.35 7.11 99.48 0.71 -12.65 16 28 H -0.29 -13.01 7.11 99.48 0.71 -12.31 16 29 C 0.22 10.77 4.85 85.63 0.42 11.19 16 30 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 31 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 32 H 0.06 1.54 6.49 -2.39 -0.02 1.53 16 33 H 0.16 2.04 8.06 -2.91 -0.02 2.02 16 34 H 0.21 1.21 8.06 -2.91 -0.02 1.18 16 35 H 0.40 8.14 7.59 -92.71 -0.70 7.44 16 36 H 0.08 1.87 7.99 -2.39 -0.02 1.85 16 37 H 0.07 1.87 6.34 -2.39 -0.02 1.86 16 38 H 0.15 2.51 8.02 -2.91 -0.02 2.49 16 39 H 0.15 2.73 8.06 -2.91 -0.02 2.70 16 40 H 0.12 3.77 8.05 -2.91 -0.02 3.75 16 41 H 0.08 2.48 6.26 -2.39 -0.01 2.47 16 42 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 43 H 0.02 0.91 8.14 -2.39 -0.02 0.90 16 44 H 0.06 2.49 7.96 -2.39 -0.02 2.47 16 45 H 0.25 14.12 8.31 -92.71 -0.77 13.35 16 46 H 0.00 0.26 8.14 -2.39 -0.02 0.24 16 47 H 0.06 3.41 6.34 -2.38 -0.02 3.40 16 Total: -1.00 -70.85 381.68 1.86 -68.99 By element: Atomic # 1 Polarization: 25.64 SS G_CDS: -0.45 Total: 25.19 kcal Atomic # 6 Polarization: -11.31 SS G_CDS: 5.89 Total: -5.42 kcal Atomic # 7 Polarization: -110.68 SS G_CDS: -5.55 Total: -116.23 kcal Atomic # 8 Polarization: -18.51 SS G_CDS: -0.06 Total: -18.57 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 2.03 Total: 46.05 kcal Total: -70.85 1.86 -68.99 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001051288267.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.172 kcal (2) G-P(sol) polarization free energy of solvation -70.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.988 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds