Wall clock time and date at job start Tue Mar 31 2020 23:09:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.34492 * 126.83119 * 2 1 4 4 N 1.36451 * 108.85323 * 180.25056 * 3 2 1 5 5 H 0.96994 * 124.84790 * 179.72365 * 4 3 2 6 6 C 1.34654 * 110.29741 * 359.75317 * 4 3 2 7 7 C 1.36763 * 108.39998 * 359.97438 * 6 4 3 8 8 C 1.47263 * 126.94363 * 179.97438 * 7 6 4 9 9 O 1.21630 * 119.99986 * 180.02562 * 8 7 6 10 10 N 1.34779 * 120.00010 * 0.02562 * 8 7 6 11 11 C 1.46499 * 119.99874 * 179.97438 * 10 8 7 12 12 C 1.50706 * 109.47069 * 180.02562 * 11 10 8 13 13 C 1.37950 * 119.71071 * 260.00470 * 12 11 10 14 14 C 1.38223 * 119.82671 * 180.02562 * 13 12 11 15 15 C 1.38002 * 119.71795 * 0.26011 * 14 13 12 16 16 C 1.38795 * 120.50217 * 359.83983 * 15 14 13 17 17 C 1.37715 * 119.84703 * 359.44063 * 16 15 14 18 18 C 1.50599 * 122.84529 * 181.01537 * 17 16 15 19 19 C 1.52781 * 110.92514 * 340.16073 * 18 17 16 20 20 N 1.47236 * 107.91202 * 47.31954 * 19 18 17 21 21 C 1.36927 * 121.33008 * 115.77766 * 20 19 18 22 22 H 1.08001 * 119.99904 * 335.41525 * 21 20 19 23 23 C 1.38816 * 120.00349 * 155.41379 * 21 20 19 24 24 N 1.31612 * 119.99529 * 344.27167 * 23 21 20 25 25 Si 1.86800 * 120.00141 * 164.26070 * 23 21 20 26 26 H 1.48496 * 109.46907 * 0.02562 * 25 23 21 27 27 H 1.48501 * 109.46795 * 120.00334 * 25 23 21 28 28 H 1.48497 * 109.47491 * 240.00353 * 25 23 21 29 29 C 1.46680 * 117.34165 * 295.79987 * 20 19 18 30 30 H 1.09005 * 109.47244 * 270.14880 * 1 2 3 31 31 H 1.08999 * 109.47344 * 30.15220 * 1 2 3 32 32 H 1.09005 * 109.46995 * 150.14702 * 1 2 3 33 33 H 1.07998 * 125.57390 * 0.03991 * 3 2 1 34 34 H 1.08007 * 125.79723 * 180.02562 * 6 4 3 35 35 H 0.96991 * 119.99876 * 0.02562 * 10 8 7 36 36 H 1.09003 * 109.47241 * 60.00571 * 11 10 8 37 37 H 1.08998 * 109.47756 * 300.00086 * 11 10 8 38 38 H 1.07999 * 120.08454 * 0.10066 * 13 12 11 39 39 H 1.08003 * 120.13888 * 180.28085 * 14 13 12 40 40 H 1.07999 * 119.75252 * 179.85814 * 15 14 13 41 41 H 1.09002 * 109.33677 * 219.67116 * 18 17 16 42 42 H 1.09006 * 108.94662 * 100.40129 * 18 17 16 43 43 H 1.08999 * 109.77877 * 287.71508 * 19 18 17 44 44 H 1.09002 * 109.77311 * 166.91942 * 19 18 17 45 45 H 0.97004 * 119.99646 * 179.97438 * 24 23 21 46 46 H 1.09003 * 109.43408 * 284.32884 * 29 20 19 47 47 H 1.08997 * 109.43496 * 164.46251 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3132 1.0765 0.0000 4 7 3.6111 0.6553 -0.0056 5 1 4.3839 1.2414 -0.0107 6 6 3.6656 -0.6901 -0.0039 7 6 2.3864 -1.1740 0.0035 8 6 1.9750 -2.5879 0.0073 9 8 0.7937 -2.8776 0.0136 10 7 2.9074 -3.5611 0.0038 11 6 2.4981 -4.9678 0.0081 12 6 3.7220 -5.8471 0.0036 13 6 4.1502 -6.4169 -1.1776 14 6 5.2721 -7.2242 -1.1844 15 6 5.9532 -7.4589 -0.0074 16 6 5.5221 -6.8878 1.1819 17 6 4.4132 -6.0713 1.1877 18 6 3.9000 -5.3995 2.4341 19 6 4.4236 -6.1002 3.6867 20 7 5.8715 -6.3073 3.5180 21 6 6.7790 -5.6935 4.3394 22 1 6.5158 -4.7760 4.8447 23 6 8.0372 -6.2505 4.5226 24 7 8.2612 -7.4994 4.1729 25 14 9.4125 -5.2274 5.2652 26 1 8.9064 -3.8651 5.5705 27 1 9.8875 -5.8706 6.5166 28 1 10.5366 -5.1335 4.2994 29 6 6.3031 -7.1968 2.4345 30 1 -0.3634 0.0027 1.0277 31 1 -0.3634 0.8886 -0.5162 32 1 -0.3633 -0.8913 -0.5116 33 1 1.9867 2.1059 0.0006 34 1 4.5665 -1.2859 -0.0070 35 1 3.8494 -3.3301 -0.0008 36 1 1.8986 -5.1744 -0.8784 37 1 1.9080 -5.1718 0.9015 38 1 3.6108 -6.2316 -2.0947 39 1 5.6144 -7.6692 -2.1071 40 1 6.8286 -8.0914 -0.0117 41 1 2.8103 -5.4275 2.4366 42 1 4.2320 -4.3612 2.4388 43 1 3.9251 -7.0621 3.8068 44 1 4.2398 -5.4770 4.5619 45 1 9.1406 -7.8885 4.3006 46 1 6.1284 -8.2329 2.7246 47 1 7.3662 -7.0483 2.2450 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001051306606.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:09:48 Heat of formation + Delta-G solvation = 50.469822 kcal Electronic energy + Delta-G solvation = -29003.222373 eV Core-core repulsion = 25151.643138 eV Total energy + Delta-G solvation = -3851.579236 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.30603 -39.79760 -38.66983 -35.97148 -34.81444 -32.75005 -32.52806 -31.81225 -30.15082 -29.98691 -28.63903 -26.65229 -25.84114 -25.55812 -23.17239 -22.74564 -22.11206 -20.51851 -20.01807 -19.27646 -18.96831 -18.45519 -16.78846 -16.39523 -15.91171 -15.48336 -15.34879 -14.89931 -14.78462 -14.28869 -14.11308 -14.03658 -13.64468 -13.60412 -13.34553 -13.04999 -12.87718 -12.75022 -12.59890 -12.53663 -12.40597 -12.25171 -11.93204 -11.52608 -11.48398 -11.24578 -10.96911 -10.85484 -10.74550 -10.36296 -10.14416 -9.91286 -9.80601 -9.72236 -8.98832 -8.70858 -8.65883 -8.42991 -8.24861 -7.87576 -6.80384 -5.86539 -3.25926 1.64214 1.68515 1.88595 2.27153 3.03412 3.32338 3.40264 3.42114 3.48054 3.63293 4.25353 4.43096 4.69548 4.89165 4.90563 5.00182 5.18474 5.26710 5.27347 5.32568 5.43088 5.46807 5.55532 5.56444 5.68333 5.79074 5.82038 5.86535 6.00810 6.01777 6.12985 6.16342 6.17937 6.24408 6.49552 6.56040 6.57129 6.66336 6.67240 6.75156 6.84738 6.86830 6.96609 7.11959 7.20648 7.24734 7.45855 7.59459 7.71854 7.73283 8.31984 8.45108 9.12875 9.75304 10.33660 11.23939 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010648 B = 0.003300 C = 0.002790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2628.927794 B = 8482.940391 C =10033.667555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C -0.110 4.110 3 C -0.029 4.029 4 N -0.550 5.550 5 H 0.417 0.583 6 C 0.050 3.950 7 C -0.226 4.226 8 C 0.588 3.412 9 O -0.548 6.548 10 N -0.721 5.721 11 C 0.168 3.832 12 C -0.123 4.123 13 C -0.118 4.118 14 C -0.132 4.132 15 C -0.115 4.115 16 C -0.077 4.077 17 C -0.046 4.046 18 C -0.098 4.098 19 C 0.142 3.858 20 N -0.593 5.593 21 C -0.247 4.247 22 H 0.070 0.930 23 C 0.000 4.000 24 N -0.907 5.907 25 Si 0.904 3.096 26 H -0.278 1.278 27 H -0.290 1.290 28 H -0.289 1.289 29 C 0.205 3.795 30 H 0.063 0.937 31 H 0.056 0.944 32 H 0.078 0.922 33 H 0.168 0.832 34 H 0.172 0.828 35 H 0.399 0.601 36 H 0.069 0.931 37 H 0.077 0.923 38 H 0.113 0.887 39 H 0.115 0.885 40 H 0.119 0.881 41 H 0.063 0.937 42 H 0.069 0.931 43 H 0.026 0.974 44 H 0.060 0.940 45 H 0.254 0.746 46 H 0.040 0.960 47 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.641 12.268 -11.890 19.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.116 4.116 3 C -0.157 4.157 4 N -0.144 5.144 5 H 0.254 0.746 6 C -0.087 4.087 7 C -0.237 4.237 8 C 0.377 3.623 9 O -0.427 6.427 10 N -0.372 5.372 11 C 0.045 3.955 12 C -0.123 4.123 13 C -0.137 4.137 14 C -0.150 4.150 15 C -0.133 4.133 16 C -0.079 4.079 17 C -0.047 4.047 18 C -0.137 4.137 19 C 0.015 3.985 20 N -0.315 5.315 21 C -0.376 4.376 22 H 0.087 0.913 23 C -0.198 4.198 24 N -0.552 5.552 25 Si 0.734 3.266 26 H -0.203 1.203 27 H -0.217 1.217 28 H -0.216 1.216 29 C 0.080 3.920 30 H 0.082 0.918 31 H 0.075 0.925 32 H 0.097 0.903 33 H 0.185 0.815 34 H 0.189 0.811 35 H 0.233 0.767 36 H 0.087 0.913 37 H 0.095 0.905 38 H 0.131 0.869 39 H 0.133 0.867 40 H 0.137 0.863 41 H 0.082 0.918 42 H 0.088 0.912 43 H 0.044 0.956 44 H 0.079 0.921 45 H 0.064 0.936 46 H 0.058 0.942 47 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -9.253 12.076 -11.822 19.267 hybrid contribution 1.854 0.723 0.274 2.009 sum -7.399 12.798 -11.549 18.759 Atomic orbital electron populations 1.20184 0.89380 1.02433 1.01968 1.20554 0.95610 0.90360 1.05121 1.21565 0.82472 0.99172 1.12474 1.41490 1.08325 1.06721 1.57829 0.74620 1.21994 0.98701 0.83886 1.04086 1.20385 0.92632 0.92863 1.17809 1.17397 0.85327 0.83964 0.75612 1.90729 1.17224 1.83789 1.50963 1.45922 1.09654 1.05748 1.75851 1.20117 0.94086 0.78798 1.02470 1.19829 0.97702 1.01031 0.93775 1.20764 0.97326 0.98872 0.96734 1.20932 0.96352 0.99903 0.97825 1.21184 0.99936 0.99979 0.92226 1.21027 0.95001 0.94362 0.97504 1.19453 0.94360 0.96763 0.94127 1.21030 0.98842 0.99654 0.94202 1.20918 0.86036 0.97154 0.94392 1.44003 0.99792 1.54702 1.33028 1.19213 0.93551 1.02884 1.21982 0.91260 1.25008 0.99344 0.95352 1.00087 1.70011 1.21930 1.11210 1.52096 0.86192 0.82267 0.79700 0.78456 1.20307 1.21663 1.21575 1.19762 0.97539 0.92947 0.81798 0.91834 0.92548 0.90326 0.81519 0.81066 0.76720 0.91318 0.90524 0.86851 0.86725 0.86322 0.91821 0.91247 0.95555 0.92142 0.93569 0.94187 0.88588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.90 9.97 36.00 0.36 -0.54 16 2 C -0.11 -1.29 6.35 -102.54 -0.65 -1.94 16 3 C -0.03 -0.26 11.82 -16.82 -0.20 -0.46 16 4 N -0.55 -4.17 5.90 -12.85 -0.08 -4.25 16 5 H 0.42 1.75 8.96 -40.82 -0.37 1.39 16 6 C 0.05 0.48 11.40 -16.85 -0.19 0.29 16 7 C -0.23 -2.87 6.29 -103.35 -0.65 -3.52 16 8 C 0.59 8.67 7.81 -12.59 -0.10 8.57 16 9 O -0.55 -9.71 15.32 5.25 0.08 -9.63 16 10 N -0.72 -9.51 5.51 -62.61 -0.34 -9.86 16 11 C 0.17 2.34 5.10 -5.19 -0.03 2.32 16 12 C -0.12 -1.85 5.26 -104.47 -0.55 -2.40 16 13 C -0.12 -1.66 9.65 -39.69 -0.38 -2.04 16 14 C -0.13 -1.91 10.05 -39.67 -0.40 -2.31 16 15 C -0.11 -1.94 9.62 -39.46 -0.38 -2.32 16 16 C -0.08 -1.51 5.82 -104.55 -0.61 -2.11 16 17 C -0.05 -0.82 5.76 -104.60 -0.60 -1.42 16 18 C -0.10 -1.73 5.24 -28.04 -0.15 -1.88 16 19 C 0.14 2.93 6.52 -3.75 -0.02 2.90 16 20 N -0.59 -14.52 2.97 -173.94 -0.52 -15.04 16 21 C -0.25 -6.59 9.69 -15.06 -0.15 -6.74 16 22 H 0.07 1.82 7.88 -52.49 -0.41 1.40 16 23 C 0.00 0.01 4.99 -17.43 -0.09 -0.08 16 24 N -0.91 -25.52 11.10 55.49 0.62 -24.91 16 25 Si 0.90 21.15 29.58 -169.99 -5.03 16.12 16 26 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 27 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 28 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 29 C 0.21 4.80 4.85 -5.04 -0.02 4.77 16 30 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.08 1.02 6.86 -51.93 -0.36 0.66 16 33 H 0.17 0.94 8.06 -52.49 -0.42 0.52 16 34 H 0.17 1.27 7.45 -52.48 -0.39 0.88 16 35 H 0.40 4.75 7.41 -40.82 -0.30 4.44 16 36 H 0.07 0.93 7.99 -51.93 -0.41 0.52 16 37 H 0.08 1.14 6.34 -51.93 -0.33 0.81 16 38 H 0.11 1.34 8.03 -52.49 -0.42 0.92 16 39 H 0.11 1.36 8.06 -52.48 -0.42 0.93 16 40 H 0.12 1.90 8.05 -52.49 -0.42 1.48 16 41 H 0.06 1.02 6.25 -51.93 -0.32 0.70 16 42 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 43 H 0.03 0.55 8.14 -51.93 -0.42 0.12 16 44 H 0.06 1.21 7.96 -51.93 -0.41 0.80 16 45 H 0.25 6.91 8.31 -40.82 -0.34 6.57 16 46 H 0.04 1.01 8.14 -51.93 -0.42 0.59 16 47 H 0.10 2.48 6.34 -51.93 -0.33 2.15 16 LS Contribution 382.57 15.07 5.77 5.77 Total: -1.00 -32.60 382.57 -10.89 -43.49 By element: Atomic # 1 Polarization: 13.79 SS G_CDS: -6.58 Total: 7.21 kcal Atomic # 6 Polarization: -4.10 SS G_CDS: -4.81 Total: -8.91 kcal Atomic # 7 Polarization: -53.73 SS G_CDS: -0.32 Total: -54.05 kcal Atomic # 8 Polarization: -9.71 SS G_CDS: 0.08 Total: -9.63 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.03 Total: 16.12 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -32.60 -10.89 -43.49 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001051306606.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.960 kcal (2) G-P(sol) polarization free energy of solvation -32.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.490 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds