Wall clock time and date at job start Tue Mar 31 2020 22:43:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.34662 * 125.79794 * 2 1 4 4 H 0.96996 * 124.85130 * 0.02562 * 3 2 1 5 5 C 1.36450 * 110.29279 * 180.30048 * 3 2 1 6 6 C 1.34482 * 108.85577 * 359.73110 * 5 3 2 7 7 C 1.36764 * 125.80249 * 179.83310 * 2 1 3 8 8 C 1.47266 * 126.94048 * 359.97438 * 7 2 1 9 9 O 1.21618 * 120.00163 * 359.71365 * 8 7 2 10 10 N 1.34776 * 119.99654 * 179.70643 * 8 7 2 11 11 C 1.46498 * 119.99940 * 179.97438 * 10 8 7 12 12 C 1.52994 * 109.47260 * 180.02562 * 11 10 8 13 13 H 1.08997 * 109.77690 * 64.24888 * 12 11 10 14 14 C 1.52794 * 109.77851 * 184.99963 * 12 11 10 15 15 C 1.50600 * 110.86263 * 167.04774 * 14 12 11 16 16 C 1.38979 * 117.60901 * 160.40876 * 15 14 12 17 17 C 1.37908 * 120.58673 * 179.54089 * 16 15 14 18 18 C 1.38274 * 119.82294 * 359.96402 * 17 16 15 19 19 C 1.37954 * 119.71450 * 0.23349 * 18 17 16 20 20 C 1.37666 * 122.87602 * 340.31360 * 15 14 12 21 21 C 1.50821 * 122.35539 * 0.75350 * 20 15 14 22 22 N 1.46680 * 109.66798 * 348.91184 * 21 20 15 23 23 C 1.36937 * 121.34713 * 224.35685 * 22 21 20 24 24 H 1.08002 * 119.99823 * 152.11318 * 23 22 21 25 25 C 1.38812 * 120.00215 * 332.11305 * 23 22 21 26 26 N 1.31619 * 119.99623 * 349.00147 * 25 23 22 27 27 Si 1.86796 * 120.00363 * 169.00781 * 25 23 22 28 28 H 1.48502 * 109.47310 * 59.99720 * 27 25 23 29 29 H 1.48491 * 109.47508 * 179.97438 * 27 25 23 30 30 H 1.48502 * 109.46949 * 300.00089 * 27 25 23 31 31 H 1.08995 * 109.47125 * 270.16470 * 1 2 3 32 32 H 1.09002 * 109.47262 * 30.16378 * 1 2 3 33 33 H 1.08998 * 109.46890 * 150.16209 * 1 2 3 34 34 H 1.07999 * 125.56642 * 179.74932 * 5 3 2 35 35 H 1.08006 * 126.82775 * 180.02562 * 6 5 3 36 36 H 0.97002 * 120.00188 * 0.02562 * 10 8 7 37 37 H 1.08994 * 109.47073 * 60.00037 * 11 10 8 38 38 H 1.09007 * 109.46971 * 300.00306 * 11 10 8 39 39 H 1.08995 * 109.20243 * 287.41148 * 14 12 11 40 40 H 1.09003 * 109.19486 * 46.69611 * 14 12 11 41 41 H 1.07999 * 119.70697 * 359.56392 * 16 15 14 42 42 H 1.07992 * 120.08692 * 179.97438 * 17 16 15 43 43 H 1.07996 * 120.13801 * 180.26337 * 18 17 16 44 44 H 1.08000 * 119.74375 * 179.97438 * 19 18 17 45 45 H 1.09007 * 109.43263 * 228.84914 * 21 20 15 46 46 H 1.08993 * 109.43828 * 108.97497 * 21 20 15 47 47 H 0.97001 * 119.99798 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2947 1.0922 0.0000 4 1 1.9733 2.0074 0.0004 5 6 3.6096 0.7275 -0.0067 6 6 3.6882 -0.6151 -0.0052 7 6 2.3071 -1.1092 0.0032 8 6 1.8703 -2.5156 0.0079 9 8 0.6840 -2.7838 0.0144 10 7 2.7850 -3.5053 0.0047 11 6 2.3505 -4.9044 0.0098 12 6 3.5767 -5.8193 0.0054 13 1 4.1436 -5.6807 0.9261 14 6 3.1340 -7.2767 -0.1145 15 6 4.3044 -8.1681 -0.4365 16 6 4.1710 -9.5263 -0.1737 17 6 5.2010 -10.3996 -0.4536 18 6 6.3776 -9.9224 -1.0012 19 6 6.5143 -8.5741 -1.2592 20 6 5.4796 -7.6934 -0.9739 21 6 5.6987 -6.2311 -1.2708 22 7 4.4277 -5.5080 -1.1551 23 6 4.0478 -4.5813 -2.0889 24 1 2.9994 -4.3934 -2.2677 25 6 5.0101 -3.8834 -2.8058 26 7 6.2743 -3.9475 -2.4452 27 14 4.5109 -2.8533 -4.2819 28 1 3.5526 -1.8036 -3.8517 29 1 5.7152 -2.2129 -4.8687 30 1 3.8677 -3.7241 -5.2984 31 1 -0.3633 0.0030 1.0276 32 1 -0.3634 0.8885 -0.5164 33 1 -0.3633 -0.8914 -0.5113 34 1 4.4497 1.4061 -0.0120 35 1 4.5891 -1.2108 -0.0089 36 1 3.7311 -3.2913 -0.0003 37 1 1.7471 -5.1007 -0.8763 38 1 1.7569 -5.0972 0.9036 39 1 2.6895 -7.5952 0.8284 40 1 2.3903 -7.3613 -0.9070 41 1 3.2525 -9.9012 0.2531 42 1 5.0889 -11.4534 -0.2458 43 1 7.1859 -10.6023 -1.2263 44 1 7.4332 -8.2008 -1.6865 45 1 6.0880 -6.1208 -2.2830 46 1 6.4158 -5.8202 -0.5602 47 1 6.9469 -3.4602 -2.9463 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054036896.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:43:07 Heat of formation + Delta-G solvation = 54.399857 kcal Electronic energy + Delta-G solvation = -29748.916563 eV Core-core repulsion = 25897.507747 eV Total energy + Delta-G solvation = -3851.408817 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.89494 -39.35896 -38.34718 -36.40741 -33.59588 -32.83156 -31.40985 -31.27035 -30.90991 -29.96132 -28.82029 -26.34930 -25.55334 -25.13990 -22.80282 -22.02900 -21.50313 -20.85050 -20.20560 -19.18150 -18.65650 -17.40237 -16.43169 -16.17252 -15.40397 -15.23405 -15.04339 -14.66854 -14.50054 -14.23419 -14.10184 -13.61092 -13.48457 -13.30181 -12.90072 -12.81623 -12.63912 -12.55360 -12.45684 -12.38461 -12.32596 -12.01659 -11.59351 -11.49547 -11.26818 -11.03310 -10.81773 -10.79006 -10.65392 -10.46259 -10.14612 -9.94457 -9.64008 -9.13731 -8.69133 -8.53744 -8.21305 -8.11620 -7.81503 -7.80029 -6.74837 -5.84736 -3.28006 1.90145 1.97860 2.16363 2.78286 3.36481 3.39971 3.42673 3.48110 4.12894 4.26471 4.33160 4.46472 5.07279 5.21181 5.23235 5.29317 5.35885 5.39522 5.40992 5.50609 5.61925 5.66942 5.75295 5.78498 5.87852 5.96891 6.00936 6.09353 6.14392 6.20076 6.24243 6.24998 6.37495 6.41538 6.56893 6.61166 6.67270 6.89493 6.97617 7.00003 7.08728 7.18234 7.22649 7.23446 7.37161 7.54765 7.67692 7.68041 7.80765 8.32908 8.53629 9.13181 9.15340 9.74475 10.32465 11.24492 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.014031 B = 0.003726 C = 0.003219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1995.087533 B = 7512.441922 C = 8697.229439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C 0.090 3.910 3 N -0.558 5.558 4 H 0.410 0.590 5 C -0.030 4.030 6 C -0.152 4.152 7 C -0.221 4.221 8 C 0.585 3.415 9 O -0.577 6.577 10 N -0.689 5.689 11 C 0.138 3.862 12 C 0.157 3.843 13 H 0.041 0.959 14 C -0.090 4.090 15 C -0.067 4.067 16 C -0.128 4.128 17 C -0.141 4.141 18 C -0.131 4.131 19 C -0.124 4.124 20 C -0.077 4.077 21 C 0.208 3.792 22 N -0.587 5.587 23 C -0.241 4.241 24 H 0.071 0.929 25 C 0.011 3.989 26 N -0.907 5.907 27 Si 0.895 3.105 28 H -0.279 1.279 29 H -0.291 1.291 30 H -0.286 1.286 31 H 0.072 0.928 32 H 0.057 0.943 33 H 0.101 0.899 34 H 0.165 0.835 35 H 0.150 0.850 36 H 0.415 0.585 37 H 0.065 0.935 38 H 0.055 0.945 39 H 0.063 0.937 40 H 0.074 0.926 41 H 0.111 0.889 42 H 0.110 0.890 43 H 0.111 0.889 44 H 0.117 0.883 45 H 0.097 0.903 46 H 0.042 0.958 47 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.423 2.246 6.406 7.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.028 4.028 3 N -0.154 5.154 4 H 0.246 0.754 5 C -0.157 4.157 6 C -0.176 4.176 7 C -0.231 4.231 8 C 0.373 3.627 9 O -0.460 6.460 10 N -0.338 5.338 11 C 0.014 3.986 12 C 0.050 3.950 13 H 0.059 0.941 14 C -0.130 4.130 15 C -0.067 4.067 16 C -0.146 4.146 17 C -0.159 4.159 18 C -0.149 4.149 19 C -0.142 4.142 20 C -0.079 4.079 21 C 0.082 3.918 22 N -0.311 5.311 23 C -0.370 4.370 24 H 0.089 0.911 25 C -0.188 4.188 26 N -0.552 5.552 27 Si 0.725 3.275 28 H -0.205 1.205 29 H -0.217 1.217 30 H -0.212 1.212 31 H 0.091 0.909 32 H 0.076 0.924 33 H 0.120 0.880 34 H 0.183 0.817 35 H 0.167 0.833 36 H 0.252 0.748 37 H 0.083 0.917 38 H 0.074 0.926 39 H 0.081 0.919 40 H 0.092 0.908 41 H 0.129 0.871 42 H 0.128 0.872 43 H 0.129 0.871 44 H 0.135 0.865 45 H 0.115 0.885 46 H 0.059 0.941 47 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -4.092 2.279 6.319 7.866 hybrid contribution 0.455 0.921 -1.019 1.447 sum -3.637 3.200 5.300 7.180 Atomic orbital electron populations 1.20504 0.87385 1.03868 1.02933 1.20262 0.93489 0.85782 1.03229 1.41508 1.06281 1.08004 1.59582 0.75392 1.21650 0.85417 0.96548 1.12062 1.22211 0.96393 0.93521 1.05493 1.20252 0.93135 0.92434 1.17291 1.17279 0.85258 0.84178 0.75958 1.90644 1.16944 1.84705 1.53676 1.45639 1.10695 1.04990 1.72504 1.21191 0.96006 0.80700 1.00693 1.20718 0.91415 0.91207 0.91635 0.94111 1.20888 0.95563 0.95888 1.00662 1.19494 0.95285 0.93311 0.98624 1.21126 0.98565 0.93310 1.01602 1.20842 0.94375 0.98790 1.01892 1.20945 0.97575 0.95571 1.00831 1.21115 0.99032 0.93068 1.01008 1.21035 0.92422 0.99355 0.95041 1.19782 0.87920 0.81942 1.02118 1.44023 1.19479 1.44676 1.22876 1.19062 0.92180 1.12882 1.12921 0.91105 1.24960 0.95730 0.98076 1.00007 1.69950 1.00021 1.44976 1.40224 0.86451 0.77324 0.80524 0.83158 1.20523 1.21740 1.21219 0.90929 0.92447 0.88031 0.81731 0.83276 0.74773 0.91666 0.92635 0.91895 0.90808 0.87111 0.87180 0.87051 0.86503 0.88531 0.94060 0.93530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.16 9.88 36.01 0.36 -0.81 16 2 C 0.09 1.37 7.17 -81.88 -0.59 0.78 16 3 N -0.56 -6.82 5.90 -9.11 -0.05 -6.88 16 4 H 0.41 3.38 8.96 -40.82 -0.37 3.02 16 5 C -0.03 -0.41 11.89 -16.82 -0.20 -0.61 16 6 C -0.15 -2.56 10.56 -37.50 -0.40 -2.95 16 7 C -0.22 -4.05 6.29 -103.35 -0.65 -4.70 16 8 C 0.58 11.94 7.81 -12.59 -0.10 11.84 16 9 O -0.58 -12.62 14.82 5.26 0.08 -12.55 16 10 N -0.69 -13.78 4.08 -61.44 -0.25 -14.03 16 11 C 0.14 2.64 4.43 -4.05 -0.02 2.62 16 12 C 0.16 3.03 2.99 -67.64 -0.20 2.83 16 13 H 0.04 0.80 8.14 -51.93 -0.42 0.37 16 14 C -0.09 -1.57 5.21 -28.04 -0.15 -1.71 16 15 C -0.07 -1.22 5.76 -104.60 -0.60 -1.82 16 16 C -0.13 -2.04 9.59 -39.43 -0.38 -2.41 16 17 C -0.14 -2.10 10.05 -39.69 -0.40 -2.50 16 18 C -0.13 -2.02 10.05 -39.67 -0.40 -2.42 16 19 C -0.12 -2.17 9.62 -39.46 -0.38 -2.55 16 20 C -0.08 -1.51 5.82 -104.55 -0.61 -2.12 16 21 C 0.21 4.65 4.80 -5.04 -0.02 4.63 16 22 N -0.59 -13.25 2.86 -166.38 -0.48 -13.72 16 23 C -0.24 -5.99 7.09 -15.06 -0.11 -6.10 16 24 H 0.07 1.84 6.18 -52.49 -0.32 1.52 16 25 C 0.01 0.28 5.08 -17.43 -0.09 0.19 16 26 N -0.91 -23.86 11.06 55.49 0.61 -23.24 16 27 Si 0.90 21.39 29.57 -169.99 -5.03 16.37 16 28 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 29 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 30 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 31 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 32 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 33 H 0.10 1.58 6.47 -51.93 -0.34 1.24 16 34 H 0.17 1.66 8.06 -52.49 -0.42 1.23 16 35 H 0.15 2.58 7.70 -52.48 -0.40 2.17 16 36 H 0.41 8.65 6.61 -40.82 -0.27 8.38 16 37 H 0.07 1.35 7.25 -51.93 -0.38 0.97 16 38 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 39 H 0.06 0.93 8.11 -51.93 -0.42 0.51 16 40 H 0.07 1.31 8.03 -51.93 -0.42 0.89 16 41 H 0.11 1.51 8.05 -52.49 -0.42 1.08 16 42 H 0.11 1.34 8.06 -52.49 -0.42 0.91 16 43 H 0.11 1.42 8.06 -52.49 -0.42 0.99 16 44 H 0.12 1.93 8.05 -52.49 -0.42 1.51 16 45 H 0.10 2.43 6.45 -51.92 -0.33 2.09 16 46 H 0.04 0.98 8.14 -51.93 -0.42 0.56 16 47 H 0.25 6.65 8.31 -40.82 -0.34 6.31 16 LS Contribution 378.76 15.07 5.71 5.71 Total: -1.00 -29.87 378.76 -10.95 -40.82 By element: Atomic # 1 Polarization: 21.96 SS G_CDS: -6.61 Total: 15.35 kcal Atomic # 6 Polarization: -2.89 SS G_CDS: -4.93 Total: -7.82 kcal Atomic # 7 Polarization: -57.71 SS G_CDS: -0.17 Total: -57.88 kcal Atomic # 8 Polarization: -12.62 SS G_CDS: 0.08 Total: -12.55 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.03 Total: 16.37 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -29.87 -10.95 -40.82 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054036896.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.218 kcal (2) G-P(sol) polarization free energy of solvation -29.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.818 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds