Wall clock time and date at job start Tue Mar 31 2020 22:43:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.34662 * 125.79794 * 2 1 4 4 H 0.96996 * 124.85130 * 0.02562 * 3 2 1 5 5 C 1.36450 * 110.29279 * 180.30048 * 3 2 1 6 6 C 1.34482 * 108.85577 * 359.73110 * 5 3 2 7 7 C 1.36764 * 125.80249 * 179.83310 * 2 1 3 8 8 C 1.47266 * 126.94048 * 359.97438 * 7 2 1 9 9 O 1.21618 * 120.00163 * 359.71365 * 8 7 2 10 10 N 1.34776 * 119.99654 * 179.70643 * 8 7 2 11 11 C 1.46498 * 119.99940 * 179.97438 * 10 8 7 12 12 C 1.52994 * 109.47260 * 180.02562 * 11 10 8 13 13 H 1.08997 * 109.77690 * 64.24888 * 12 11 10 14 14 C 1.52794 * 109.77851 * 184.99963 * 12 11 10 15 15 C 1.50600 * 110.86263 * 167.04774 * 14 12 11 16 16 C 1.38979 * 117.60901 * 160.40876 * 15 14 12 17 17 C 1.37908 * 120.58673 * 179.54089 * 16 15 14 18 18 C 1.38274 * 119.82294 * 359.96402 * 17 16 15 19 19 C 1.37954 * 119.71450 * 0.23349 * 18 17 16 20 20 C 1.37666 * 122.87602 * 340.31360 * 15 14 12 21 21 C 1.50821 * 122.35539 * 0.75350 * 20 15 14 22 22 N 1.46680 * 109.66798 * 348.91184 * 21 20 15 23 23 C 1.36937 * 121.34713 * 224.35685 * 22 21 20 24 24 H 1.08002 * 119.99823 * 152.11318 * 23 22 21 25 25 C 1.38812 * 120.00215 * 332.11305 * 23 22 21 26 26 N 1.31619 * 119.99623 * 349.00147 * 25 23 22 27 27 Si 1.86796 * 120.00363 * 169.00781 * 25 23 22 28 28 H 1.48502 * 109.47310 * 59.99720 * 27 25 23 29 29 H 1.48491 * 109.47508 * 179.97438 * 27 25 23 30 30 H 1.48502 * 109.46949 * 300.00089 * 27 25 23 31 31 H 1.08995 * 109.47125 * 270.16470 * 1 2 3 32 32 H 1.09002 * 109.47262 * 30.16378 * 1 2 3 33 33 H 1.08998 * 109.46890 * 150.16209 * 1 2 3 34 34 H 1.07999 * 125.56642 * 179.74932 * 5 3 2 35 35 H 1.08006 * 126.82775 * 180.02562 * 6 5 3 36 36 H 0.97002 * 120.00188 * 0.02562 * 10 8 7 37 37 H 1.08994 * 109.47073 * 60.00037 * 11 10 8 38 38 H 1.09007 * 109.46971 * 300.00306 * 11 10 8 39 39 H 1.08995 * 109.20243 * 287.41148 * 14 12 11 40 40 H 1.09003 * 109.19486 * 46.69611 * 14 12 11 41 41 H 1.07999 * 119.70697 * 359.56392 * 16 15 14 42 42 H 1.07992 * 120.08692 * 179.97438 * 17 16 15 43 43 H 1.07996 * 120.13801 * 180.26337 * 18 17 16 44 44 H 1.08000 * 119.74375 * 179.97438 * 19 18 17 45 45 H 1.09007 * 109.43263 * 228.84914 * 21 20 15 46 46 H 1.08993 * 109.43828 * 108.97497 * 21 20 15 47 47 H 0.97001 * 119.99798 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2947 1.0922 0.0000 4 1 1.9733 2.0074 0.0004 5 6 3.6096 0.7275 -0.0067 6 6 3.6882 -0.6151 -0.0052 7 6 2.3071 -1.1092 0.0032 8 6 1.8703 -2.5156 0.0079 9 8 0.6840 -2.7838 0.0144 10 7 2.7850 -3.5053 0.0047 11 6 2.3505 -4.9044 0.0098 12 6 3.5767 -5.8193 0.0054 13 1 4.1436 -5.6807 0.9261 14 6 3.1340 -7.2767 -0.1145 15 6 4.3044 -8.1681 -0.4365 16 6 4.1710 -9.5263 -0.1737 17 6 5.2010 -10.3996 -0.4536 18 6 6.3776 -9.9224 -1.0012 19 6 6.5143 -8.5741 -1.2592 20 6 5.4796 -7.6934 -0.9739 21 6 5.6987 -6.2311 -1.2708 22 7 4.4277 -5.5080 -1.1551 23 6 4.0478 -4.5813 -2.0889 24 1 2.9994 -4.3934 -2.2677 25 6 5.0101 -3.8834 -2.8058 26 7 6.2743 -3.9475 -2.4452 27 14 4.5109 -2.8533 -4.2819 28 1 3.5526 -1.8036 -3.8517 29 1 5.7152 -2.2129 -4.8687 30 1 3.8677 -3.7241 -5.2984 31 1 -0.3633 0.0030 1.0276 32 1 -0.3634 0.8885 -0.5164 33 1 -0.3633 -0.8914 -0.5113 34 1 4.4497 1.4061 -0.0120 35 1 4.5891 -1.2108 -0.0089 36 1 3.7311 -3.2913 -0.0003 37 1 1.7471 -5.1007 -0.8763 38 1 1.7569 -5.0972 0.9036 39 1 2.6895 -7.5952 0.8284 40 1 2.3903 -7.3613 -0.9070 41 1 3.2525 -9.9012 0.2531 42 1 5.0889 -11.4534 -0.2458 43 1 7.1859 -10.6023 -1.2263 44 1 7.4332 -8.2008 -1.6865 45 1 6.0880 -6.1208 -2.2830 46 1 6.4158 -5.8202 -0.5602 47 1 6.9469 -3.4602 -2.9463 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054036896.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:43:06 Heat of formation + Delta-G solvation = 37.834754 kcal Electronic energy + Delta-G solvation = -29749.634880 eV Core-core repulsion = 25897.507747 eV Total energy + Delta-G solvation = -3852.127133 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.08678 -40.80845 -39.85244 -37.98298 -35.27133 -34.44984 -32.95712 -32.41953 -32.21500 -31.45187 -30.35338 -27.60057 -27.32468 -26.48646 -24.51918 -23.42528 -22.87351 -22.29448 -21.41766 -20.72273 -20.19524 -18.56838 -18.12703 -17.69199 -16.93120 -16.71945 -16.51252 -16.13529 -15.97488 -15.80655 -15.54165 -15.14619 -14.94711 -14.58771 -14.53893 -14.20662 -14.03336 -13.91310 -13.74945 -13.58065 -13.53644 -13.36914 -13.22909 -13.07283 -12.74268 -12.59990 -12.51353 -12.41641 -12.25906 -12.14616 -11.84884 -11.58538 -11.27244 -10.70877 -10.62448 -9.90486 -9.57892 -9.51432 -9.24148 -9.04659 -8.62998 -7.83708 -5.26624 0.60824 0.64865 0.85409 1.43008 1.44223 1.49979 1.57370 2.26843 2.49616 2.67506 2.79349 3.00755 3.35361 3.54702 3.87861 3.97702 4.12299 4.18554 4.25561 4.26816 4.34811 4.35622 4.42243 4.45237 4.54460 4.68387 4.72636 4.74848 4.76647 4.85368 4.94247 4.94955 5.04177 5.10972 5.22462 5.25393 5.29292 5.34985 5.46473 5.54163 5.69821 5.72426 5.77055 5.79630 5.83840 6.02916 6.04463 6.29932 6.39108 6.72359 6.92281 7.18990 7.54171 7.83911 8.39606 9.23538 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.014031 B = 0.003726 C = 0.003219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1995.087533 B = 7512.441922 C = 8697.229439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.097 3.903 3 N -0.535 5.535 4 H 0.434 0.566 5 C -0.005 4.005 6 C -0.190 4.190 7 C -0.269 4.269 8 C 0.577 3.423 9 O -0.600 6.600 10 N -0.693 5.693 11 C 0.144 3.856 12 C 0.159 3.841 13 H 0.040 0.960 14 C -0.084 4.084 15 C -0.084 4.084 16 C -0.127 4.127 17 C -0.131 4.131 18 C -0.127 4.127 19 C -0.137 4.137 20 C -0.108 4.108 21 C 0.224 3.776 22 N -0.598 5.598 23 C -0.227 4.227 24 H 0.058 0.942 25 C -0.027 4.027 26 N -0.925 5.925 27 Si 0.940 3.060 28 H -0.286 1.286 29 H -0.291 1.291 30 H -0.291 1.291 31 H 0.086 0.914 32 H 0.093 0.907 33 H 0.072 0.928 34 H 0.205 0.795 35 H 0.131 0.869 36 H 0.408 0.592 37 H 0.045 0.955 38 H 0.074 0.926 39 H 0.095 0.905 40 H 0.068 0.932 41 H 0.140 0.860 42 H 0.149 0.851 43 H 0.143 0.857 44 H 0.115 0.885 45 H 0.061 0.939 46 H 0.014 0.986 47 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.328 1.807 7.382 8.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.023 4.023 3 N -0.133 5.133 4 H 0.275 0.725 5 C -0.132 4.132 6 C -0.214 4.214 7 C -0.279 4.279 8 C 0.368 3.632 9 O -0.485 6.485 10 N -0.341 5.341 11 C 0.020 3.980 12 C 0.053 3.947 13 H 0.058 0.942 14 C -0.123 4.123 15 C -0.084 4.084 16 C -0.145 4.145 17 C -0.149 4.149 18 C -0.145 4.145 19 C -0.156 4.156 20 C -0.110 4.110 21 C 0.098 3.902 22 N -0.321 5.321 23 C -0.357 4.357 24 H 0.075 0.925 25 C -0.223 4.223 26 N -0.572 5.572 27 Si 0.770 3.230 28 H -0.213 1.213 29 H -0.217 1.217 30 H -0.218 1.218 31 H 0.104 0.896 32 H 0.111 0.889 33 H 0.091 0.909 34 H 0.222 0.778 35 H 0.149 0.851 36 H 0.245 0.755 37 H 0.064 0.936 38 H 0.092 0.908 39 H 0.114 0.886 40 H 0.086 0.914 41 H 0.158 0.842 42 H 0.166 0.834 43 H 0.161 0.839 44 H 0.133 0.867 45 H 0.079 0.921 46 H 0.032 0.968 47 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -5.010 1.853 7.306 9.051 hybrid contribution 0.719 1.019 -1.272 1.781 sum -4.291 2.872 6.035 7.942 Atomic orbital electron populations 1.20511 0.85788 1.04156 1.03892 1.20527 0.94551 0.85762 1.01445 1.41476 1.05563 1.08615 1.57656 0.72539 1.22131 0.86713 0.95739 1.08634 1.22182 0.95398 0.95239 1.08589 1.20336 0.94669 0.92123 1.20730 1.17711 0.84953 0.85268 0.75317 1.90607 1.17604 1.85291 1.54980 1.45698 1.10327 1.05444 1.72650 1.21170 0.95789 0.80495 1.00557 1.20831 0.90788 0.92865 0.90199 0.94208 1.20816 0.95381 0.93955 1.02124 1.19655 0.94731 0.94884 0.99115 1.21432 1.00112 0.92080 1.00896 1.21327 0.93303 1.00558 0.99696 1.21306 0.98898 0.94685 0.99604 1.21225 0.98570 0.94270 1.01501 1.20787 0.94491 0.97654 0.98039 1.19341 0.87184 0.84318 0.99317 1.44139 1.19895 1.44441 1.23673 1.18985 0.91346 1.12501 1.12891 0.92469 1.25354 0.95892 0.99350 1.01741 1.70064 1.00348 1.45873 1.40878 0.85762 0.76593 0.79277 0.81319 1.21287 1.21661 1.21806 0.89571 0.88877 0.90916 0.77815 0.85118 0.75537 0.93619 0.90754 0.88632 0.91399 0.84202 0.83357 0.83922 0.86704 0.92076 0.96835 0.94152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.11 9.88 71.24 0.70 -1.41 16 2 C 0.10 2.84 7.17 41.78 0.30 3.14 16 3 N -0.54 -11.66 5.90 -182.72 -1.08 -12.74 16 4 H 0.43 5.43 8.96 -92.71 -0.83 4.60 16 5 C 0.00 -0.11 11.89 83.11 0.99 0.87 16 6 C -0.19 -6.53 10.56 23.62 0.25 -6.28 16 7 C -0.27 -10.07 6.29 -19.04 -0.12 -10.19 16 8 C 0.58 24.62 7.81 86.62 0.68 25.29 16 9 O -0.60 -27.21 14.82 -4.09 -0.06 -27.27 16 10 N -0.69 -29.27 4.08 -466.54 -1.90 -31.17 16 11 C 0.14 5.69 4.43 86.38 0.38 6.08 16 12 C 0.16 6.31 2.99 44.78 0.13 6.45 16 13 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 14 C -0.08 -2.84 5.21 29.75 0.16 -2.68 16 15 C -0.08 -2.97 5.76 -19.85 -0.11 -3.08 16 16 C -0.13 -3.64 9.59 22.37 0.21 -3.42 16 17 C -0.13 -3.37 10.05 22.20 0.22 -3.15 16 18 C -0.13 -3.56 10.05 22.21 0.22 -3.34 16 19 C -0.14 -4.80 9.62 22.35 0.21 -4.59 16 20 C -0.11 -4.35 5.82 -19.82 -0.12 -4.46 16 21 C 0.22 10.66 4.80 85.64 0.41 11.07 16 22 N -0.60 -28.36 2.86 -680.30 -1.95 -30.31 16 23 C -0.23 -11.86 7.09 84.03 0.60 -11.26 16 24 H 0.06 3.13 6.18 -2.91 -0.02 3.12 16 25 C -0.03 -1.46 5.08 84.86 0.43 -1.03 16 26 N -0.93 -51.33 11.06 21.65 0.24 -51.09 16 27 Si 0.94 45.70 29.57 68.60 2.03 47.73 16 28 H -0.29 -14.13 7.11 99.48 0.71 -13.42 16 29 H -0.29 -13.99 7.11 99.48 0.71 -13.28 16 30 H -0.29 -14.27 7.11 99.48 0.71 -13.56 16 31 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 32 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 33 H 0.07 2.26 6.47 -2.39 -0.02 2.25 16 34 H 0.21 3.38 8.06 -2.91 -0.02 3.36 16 35 H 0.13 4.86 7.70 -2.91 -0.02 4.83 16 36 H 0.41 18.25 6.61 -92.71 -0.61 17.64 16 37 H 0.05 1.97 7.25 -2.39 -0.02 1.96 16 38 H 0.07 2.63 8.14 -2.38 -0.02 2.61 16 39 H 0.10 2.60 8.11 -2.39 -0.02 2.58 16 40 H 0.07 2.38 8.03 -2.39 -0.02 2.37 16 41 H 0.14 3.16 8.05 -2.91 -0.02 3.14 16 42 H 0.15 2.73 8.06 -2.91 -0.02 2.71 16 43 H 0.14 3.08 8.06 -2.91 -0.02 3.05 16 44 H 0.11 3.92 8.05 -2.91 -0.02 3.90 16 45 H 0.06 3.29 6.45 -2.38 -0.02 3.28 16 46 H 0.01 0.71 8.14 -2.39 -0.02 0.69 16 47 H 0.25 13.65 8.31 -92.71 -0.77 12.88 16 Total: -1.00 -69.54 378.76 2.40 -67.15 By element: Atomic # 1 Polarization: 40.13 SS G_CDS: -0.44 Total: 39.70 kcal Atomic # 6 Polarization: -7.54 SS G_CDS: 5.55 Total: -1.99 kcal Atomic # 7 Polarization: -120.63 SS G_CDS: -4.69 Total: -125.32 kcal Atomic # 8 Polarization: -27.21 SS G_CDS: -0.06 Total: -27.27 kcal Atomic # 14 Polarization: 45.70 SS G_CDS: 2.03 Total: 47.73 kcal Total: -69.54 2.40 -67.15 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054036896.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.982 kcal (2) G-P(sol) polarization free energy of solvation -69.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.147 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds