Wall clock time and date at job start Tue Mar 31 2020 22:57:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.39833 * 126.46073 * 2 1 4 4 C 1.35444 * 107.86770 * 179.97438 * 3 2 1 5 5 N 1.35534 * 108.87336 * 0.02562 * 4 3 2 6 6 H 0.96999 * 125.68283 * 180.02562 * 5 4 3 7 7 C 1.37658 * 108.64331 * 359.74982 * 5 4 3 8 8 C 1.46670 * 126.23579 * 180.24656 * 7 5 4 9 9 O 1.21700 * 120.00386 * 180.17376 * 8 7 5 10 10 N 1.34782 * 120.00020 * 0.17678 * 8 7 5 11 11 C 1.46501 * 119.99885 * 179.97438 * 10 8 7 12 12 C 1.53002 * 109.46946 * 179.97438 * 11 10 8 13 13 H 1.09001 * 109.76708 * 295.00679 * 12 11 10 14 14 C 1.52788 * 109.77363 * 174.25838 * 12 11 10 15 15 C 1.50598 * 110.85310 * 192.91336 * 14 12 11 16 16 C 1.38985 * 117.62152 * 200.06174 * 15 14 12 17 17 C 1.37907 * 120.57971 * 180.47897 * 16 15 14 18 18 C 1.38268 * 119.82989 * 0.05164 * 17 16 15 19 19 C 1.37952 * 119.71455 * 359.75912 * 18 17 16 20 20 C 1.37667 * 122.86096 * 20.15230 * 15 14 12 21 21 C 1.50814 * 122.34676 * 358.58125 * 20 15 14 22 22 N 1.46680 * 109.71233 * 11.46863 * 21 20 15 23 23 C 1.36929 * 121.32701 * 135.64252 * 22 21 20 24 24 H 1.08002 * 120.00253 * 144.37570 * 23 22 21 25 25 C 1.38815 * 120.00044 * 324.37006 * 23 22 21 26 26 N 1.31623 * 120.00057 * 158.36639 * 25 23 22 27 27 Si 1.86800 * 120.00056 * 338.36965 * 25 23 22 28 28 H 1.48504 * 109.46973 * 95.36418 * 27 25 23 29 29 H 1.48500 * 109.46911 * 215.35973 * 27 25 23 30 30 H 1.48494 * 109.47044 * 335.36416 * 27 25 23 31 31 H 1.09001 * 109.47224 * 90.02668 * 1 2 3 32 32 H 1.08998 * 109.47495 * 330.02688 * 1 2 3 33 33 H 1.09004 * 109.47598 * 210.02128 * 1 2 3 34 34 H 1.08002 * 126.06300 * 0.02562 * 3 2 1 35 35 H 1.08002 * 125.56511 * 180.02562 * 4 3 2 36 36 H 0.97001 * 119.99724 * 0.02562 * 10 8 7 37 37 H 1.09001 * 109.47282 * 299.99993 * 11 10 8 38 38 H 1.09004 * 109.46919 * 60.00145 * 11 10 8 39 39 H 1.09009 * 109.19902 * 313.26233 * 14 12 11 40 40 H 1.08997 * 109.20353 * 72.55513 * 14 12 11 41 41 H 1.07995 * 119.70755 * 0.45410 * 16 15 14 42 42 H 1.07998 * 120.08535 * 180.02562 * 17 16 15 43 43 H 1.07995 * 120.14197 * 179.79336 * 18 17 16 44 44 H 1.08002 * 119.75067 * 179.97438 * 19 18 17 45 45 H 1.08995 * 109.43755 * 131.57943 * 21 20 15 46 46 H 1.09000 * 109.43443 * 251.49445 * 21 20 15 47 47 H 0.96998 * 120.00142 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3380 1.1246 0.0000 4 6 3.6217 0.6928 0.0006 5 7 3.6283 -0.6626 0.0004 6 1 4.4190 -1.2245 0.0010 7 6 2.3262 -1.1090 0.0053 8 6 1.8897 -2.5092 0.0119 9 8 0.7025 -2.7766 0.0127 10 7 2.8036 -3.4999 0.0172 11 6 2.3676 -4.8986 0.0243 12 6 3.5930 -5.8147 0.0286 13 1 4.1477 -5.6928 -0.9018 14 6 3.1505 -7.2692 0.1798 15 6 4.3244 -8.1562 0.5009 16 6 4.1901 -9.5173 0.2544 17 6 5.2234 -10.3865 0.5350 18 6 6.4040 -9.9023 1.0674 19 6 6.5416 -8.5512 1.3095 20 6 5.5039 -7.6745 1.0225 21 6 5.7293 -6.2070 1.2874 22 7 4.4591 -5.4826 1.1719 23 6 4.0930 -4.5365 2.0915 24 1 3.5478 -3.6592 1.7760 25 6 4.4224 -4.7050 3.4295 26 7 4.4689 -3.6628 4.2321 27 14 4.7997 -6.4107 4.0908 28 1 6.2678 -6.6339 4.0757 29 1 4.2962 -6.5242 5.4832 30 1 4.1352 -7.4298 3.2394 31 1 -0.3634 -0.0005 -1.0277 32 1 -0.3634 0.8902 0.5134 33 1 -0.3634 -0.8898 0.5142 34 1 2.0136 2.1548 0.0004 35 1 4.4972 1.3252 0.0011 36 1 3.7499 -3.2868 0.0170 37 1 1.7688 -5.0880 0.9152 38 1 1.7691 -5.0971 -0.8648 39 1 2.4178 -7.3392 0.9839 40 1 2.6927 -7.6034 -0.7512 41 1 3.2683 -9.8977 -0.1603 42 1 5.1105 -11.4427 0.3398 43 1 7.2152 -10.5789 1.2922 44 1 7.4634 -8.1724 1.7257 45 1 6.1312 -6.0773 2.2922 46 1 6.4379 -5.8117 0.5595 47 1 4.6995 -3.7804 5.1669 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054042011.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:57:48 Heat of formation + Delta-G solvation = 49.142867 kcal Electronic energy + Delta-G solvation = -29852.454336 eV Core-core repulsion = 26000.817560 eV Total energy + Delta-G solvation = -3851.636777 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.19626 -41.05207 -39.98075 -38.18703 -35.54362 -34.60106 -33.50416 -33.28007 -32.05378 -31.16177 -30.25453 -27.99785 -27.36270 -26.57103 -24.87713 -23.31338 -23.01241 -22.43937 -21.42889 -20.67040 -20.22039 -19.53850 -18.40871 -17.71346 -17.09346 -16.99831 -16.74155 -16.35237 -16.08445 -15.90899 -15.63528 -15.17501 -14.79335 -14.72883 -14.63177 -14.49440 -14.33628 -14.00616 -13.93656 -13.78793 -13.64321 -13.51938 -13.11841 -13.11065 -12.91864 -12.79061 -12.59969 -12.48054 -12.29211 -12.15633 -11.89084 -11.59565 -11.45787 -10.91745 -10.69524 -9.94093 -9.66035 -9.62197 -9.39879 -9.01283 -8.81861 -8.16297 -5.53797 0.47156 0.49119 0.58180 1.23184 1.38132 1.49941 1.91267 2.20705 2.36733 2.42224 2.50517 2.85633 3.05670 3.20041 3.72616 3.89442 4.00663 4.08964 4.14431 4.29865 4.30705 4.31224 4.35284 4.37779 4.46468 4.54046 4.60841 4.68184 4.80976 4.84281 4.86509 4.90653 4.92186 4.94147 5.07439 5.13796 5.16689 5.22005 5.31529 5.48279 5.55984 5.57387 5.60657 5.78859 5.86629 5.92717 6.08097 6.15393 6.24813 6.56837 6.69820 6.91551 7.26451 7.59274 8.06377 8.98988 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.015695 B = 0.003585 C = 0.003255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1783.553885 B = 7809.403741 C = 8600.601481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C -0.100 4.100 3 C -0.228 4.228 4 C 0.040 3.960 5 N -0.531 5.531 6 H 0.424 0.576 7 C -0.086 4.086 8 C 0.578 3.422 9 O -0.577 6.577 10 N -0.699 5.699 11 C 0.141 3.859 12 C 0.162 3.838 13 H 0.073 0.927 14 C -0.092 4.092 15 C -0.078 4.078 16 C -0.129 4.129 17 C -0.127 4.127 18 C -0.128 4.128 19 C -0.142 4.142 20 C -0.109 4.109 21 C 0.168 3.832 22 N -0.610 5.610 23 C -0.249 4.249 24 H 0.100 0.900 25 C -0.016 4.016 26 N -0.942 5.942 27 Si 0.915 3.085 28 H -0.283 1.283 29 H -0.328 1.328 30 H -0.256 1.256 31 H 0.070 0.930 32 H 0.078 0.922 33 H 0.051 0.949 34 H 0.165 0.835 35 H 0.210 0.790 36 H 0.408 0.592 37 H 0.043 0.957 38 H 0.084 0.916 39 H 0.059 0.941 40 H 0.102 0.898 41 H 0.141 0.859 42 H 0.150 0.850 43 H 0.146 0.854 44 H 0.121 0.879 45 H 0.050 0.950 46 H 0.059 0.941 47 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.693 -2.062 -12.921 13.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.109 4.109 3 C -0.251 4.251 4 C -0.097 4.097 5 N -0.127 5.127 6 H 0.263 0.737 7 C -0.199 4.199 8 C 0.368 3.632 9 O -0.458 6.458 10 N -0.349 5.349 11 C 0.018 3.982 12 C 0.056 3.944 13 H 0.091 0.909 14 C -0.131 4.131 15 C -0.078 4.078 16 C -0.147 4.147 17 C -0.145 4.145 18 C -0.146 4.146 19 C -0.160 4.160 20 C -0.111 4.111 21 C 0.044 3.956 22 N -0.335 5.335 23 C -0.379 4.379 24 H 0.117 0.883 25 C -0.212 4.212 26 N -0.587 5.587 27 Si 0.746 3.254 28 H -0.211 1.211 29 H -0.259 1.259 30 H -0.180 1.180 31 H 0.089 0.911 32 H 0.097 0.903 33 H 0.070 0.930 34 H 0.182 0.818 35 H 0.227 0.773 36 H 0.245 0.755 37 H 0.061 0.939 38 H 0.102 0.898 39 H 0.077 0.923 40 H 0.121 0.879 41 H 0.159 0.841 42 H 0.168 0.832 43 H 0.163 0.837 44 H 0.139 0.861 45 H 0.068 0.932 46 H 0.077 0.923 47 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 1.994 -2.361 -12.795 13.163 hybrid contribution 1.056 -1.001 1.516 2.101 sum 3.050 -3.362 -11.280 12.159 Atomic orbital electron populations 1.20268 0.89421 1.02281 1.02119 1.20281 0.96403 0.91718 1.02515 1.21070 0.91921 0.99061 1.13075 1.22689 1.00622 0.82567 1.03822 1.42042 1.06683 1.08109 1.55850 0.73694 1.20185 0.85285 0.93047 1.21393 1.17360 0.85579 0.84150 0.76125 1.90715 1.17415 1.84122 1.53584 1.45909 1.09809 1.06123 1.73080 1.21257 0.96248 0.79620 1.01107 1.21006 0.90262 0.91993 0.91108 0.90909 1.20898 0.95255 0.94671 1.02306 1.19656 0.94513 0.94983 0.98648 1.21476 1.00174 0.92165 1.00893 1.21380 0.93193 1.00716 0.99177 1.21338 0.98973 0.94754 0.99495 1.21298 0.98740 0.94527 1.01483 1.20343 0.94722 0.96664 0.99326 1.20057 0.88700 0.87463 0.99401 1.44534 1.16625 1.44750 1.27575 1.19455 1.33212 0.98777 0.86429 0.88332 1.25962 1.00332 0.97951 0.96949 1.69922 1.52983 1.30062 1.05757 0.86330 0.77384 0.85698 0.75964 1.21099 1.25873 1.18037 0.91116 0.90274 0.93039 0.81750 0.77311 0.75549 0.93897 0.89756 0.92258 0.87948 0.84113 0.83237 0.83667 0.86100 0.93224 0.92332 0.93446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.53 9.84 71.23 0.70 -1.83 16 2 C -0.10 -3.24 6.21 -19.57 -0.12 -3.36 16 3 C -0.23 -5.81 10.76 22.01 0.24 -5.57 16 4 C 0.04 0.91 11.89 83.48 0.99 1.90 16 5 N -0.53 -14.80 5.99 -183.62 -1.10 -15.90 16 6 H 0.42 10.51 8.19 -92.71 -0.76 9.75 16 7 C -0.09 -3.03 7.06 40.35 0.28 -2.74 16 8 C 0.58 22.91 7.77 86.44 0.67 23.59 16 9 O -0.58 -25.85 14.80 -4.35 -0.06 -25.91 16 10 N -0.70 -25.39 3.29 -467.06 -1.54 -26.92 16 11 C 0.14 5.01 4.54 86.38 0.39 5.40 16 12 C 0.16 5.43 3.01 44.78 0.13 5.56 16 13 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 14 C -0.09 -2.86 5.21 29.75 0.16 -2.71 16 15 C -0.08 -2.53 5.62 -19.85 -0.11 -2.64 16 16 C -0.13 -3.44 9.59 22.37 0.21 -3.23 16 17 C -0.13 -3.02 10.04 22.20 0.22 -2.79 16 18 C -0.13 -3.26 10.05 22.21 0.22 -3.03 16 19 C -0.14 -4.43 9.62 22.35 0.22 -4.22 16 20 C -0.11 -3.87 4.22 -19.82 -0.08 -3.95 16 21 C 0.17 6.61 5.13 85.63 0.44 7.05 16 22 N -0.61 -25.12 2.47 -680.35 -1.68 -26.80 16 23 C -0.25 -12.48 8.35 84.04 0.70 -11.78 16 24 H 0.10 5.14 4.92 -2.91 -0.01 5.13 16 25 C -0.02 -0.87 5.27 84.86 0.45 -0.42 16 26 N -0.94 -56.84 13.97 21.65 0.30 -56.53 16 27 Si 0.91 46.25 24.41 68.60 1.67 47.93 16 28 H -0.28 -13.81 6.70 99.48 0.67 -13.15 16 29 H -0.33 -17.71 7.11 99.48 0.71 -17.00 16 30 H -0.26 -12.71 6.21 99.48 0.62 -12.09 16 31 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 32 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 33 H 0.05 1.85 6.47 -2.38 -0.02 1.84 16 34 H 0.16 3.20 8.06 -2.91 -0.02 3.18 16 35 H 0.21 2.83 8.06 -2.91 -0.02 2.81 16 36 H 0.41 14.07 6.32 -92.71 -0.59 13.48 16 37 H 0.04 1.81 7.88 -2.39 -0.02 1.80 16 38 H 0.08 2.61 8.14 -2.38 -0.02 2.59 16 39 H 0.06 2.08 8.02 -2.38 -0.02 2.06 16 40 H 0.10 2.43 8.10 -2.39 -0.02 2.41 16 41 H 0.14 2.97 8.05 -2.91 -0.02 2.94 16 42 H 0.15 2.51 8.06 -2.91 -0.02 2.48 16 43 H 0.15 2.78 8.06 -2.91 -0.02 2.75 16 44 H 0.12 3.53 8.05 -2.91 -0.02 3.50 16 45 H 0.05 2.22 3.96 -2.39 -0.01 2.21 16 46 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 47 H 0.26 15.14 8.31 -92.71 -0.77 14.37 16 Total: -1.00 -72.62 370.36 2.85 -69.77 By element: Atomic # 1 Polarization: 39.61 SS G_CDS: -0.46 Total: 39.15 kcal Atomic # 6 Polarization: -10.49 SS G_CDS: 5.72 Total: -4.77 kcal Atomic # 7 Polarization: -122.14 SS G_CDS: -4.02 Total: -126.16 kcal Atomic # 8 Polarization: -25.85 SS G_CDS: -0.06 Total: -25.91 kcal Atomic # 14 Polarization: 46.25 SS G_CDS: 1.67 Total: 47.93 kcal Total: -72.62 2.85 -69.77 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054042011.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.910 kcal (2) G-P(sol) polarization free energy of solvation -72.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.767 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds