Wall clock time and date at job start Tue Mar 31 2020 22:57:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.39839 * 126.45986 * 2 1 4 4 C 1.35448 * 107.86279 * 180.30078 * 3 2 1 5 5 N 1.35534 * 108.87422 * 359.74142 * 4 3 2 6 6 H 0.97006 * 125.67699 * 180.02562 * 5 4 3 7 7 C 1.37652 * 108.64275 * 0.02562 * 5 4 3 8 8 C 1.46677 * 126.22891 * 180.02562 * 7 5 4 9 9 O 1.21694 * 119.99985 * 180.02562 * 8 7 5 10 10 N 1.34776 * 120.00390 * 0.02562 * 8 7 5 11 11 C 1.46496 * 119.99985 * 180.02562 * 10 8 7 12 12 C 1.53005 * 109.46977 * 179.97438 * 11 10 8 13 13 H 1.08997 * 109.77087 * 64.25283 * 12 11 10 14 14 C 1.52790 * 109.77374 * 184.99970 * 12 11 10 15 15 C 1.50604 * 110.85512 * 167.05645 * 14 12 11 16 16 C 1.38988 * 117.60973 * 160.40955 * 15 14 12 17 17 C 1.37901 * 120.58613 * 179.53904 * 16 15 14 18 18 C 1.38261 * 119.82747 * 359.95802 * 17 16 15 19 19 C 1.37960 * 119.71856 * 0.24177 * 18 17 16 20 20 C 1.37667 * 122.87835 * 340.30791 * 15 14 12 21 21 C 1.50811 * 122.35539 * 0.75736 * 20 15 14 22 22 N 1.46688 * 109.66674 * 348.91128 * 21 20 15 23 23 C 1.36933 * 121.34477 * 224.34921 * 22 21 20 24 24 H 1.08005 * 119.99758 * 152.09365 * 23 22 21 25 25 C 1.38812 * 120.00592 * 332.09714 * 23 22 21 26 26 N 1.31619 * 119.99623 * 349.00256 * 25 23 22 27 27 Si 1.86796 * 120.00363 * 169.00890 * 25 23 22 28 28 H 1.48507 * 109.46968 * 0.02562 * 27 25 23 29 29 H 1.48498 * 109.47371 * 119.99726 * 27 25 23 30 30 H 1.48494 * 109.47291 * 239.99868 * 27 25 23 31 31 H 1.08993 * 109.46893 * 270.13349 * 1 2 3 32 32 H 1.09000 * 109.46638 * 30.13778 * 1 2 3 33 33 H 1.09002 * 109.46756 * 150.13845 * 1 2 3 34 34 H 1.08000 * 126.06685 * 0.02562 * 3 2 1 35 35 H 1.08003 * 125.55807 * 179.70291 * 4 3 2 36 36 H 0.97003 * 119.99595 * 359.97438 * 10 8 7 37 37 H 1.09004 * 109.47114 * 60.00188 * 11 10 8 38 38 H 1.08997 * 109.47253 * 299.99995 * 11 10 8 39 39 H 1.09000 * 109.19922 * 287.41141 * 14 12 11 40 40 H 1.08994 * 109.20228 * 46.70600 * 14 12 11 41 41 H 1.08003 * 119.70479 * 359.55903 * 16 15 14 42 42 H 1.08000 * 120.08470 * 179.97438 * 17 16 15 43 43 H 1.08004 * 120.14285 * 180.25656 * 18 17 16 44 44 H 1.07988 * 119.74873 * 179.97438 * 19 18 17 45 45 H 1.08994 * 109.44044 * 228.84807 * 21 20 15 46 46 H 1.09004 * 109.43718 * 108.97278 * 21 20 15 47 47 H 0.97001 * 119.99798 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3380 1.1247 0.0000 4 6 3.6218 0.6927 -0.0068 5 7 3.6284 -0.6626 -0.0052 6 1 4.4191 -1.2245 -0.0087 7 6 2.3262 -1.1089 0.0021 8 6 1.8899 -2.5093 0.0065 9 8 0.7027 -2.7766 0.0125 10 7 2.8036 -3.5000 0.0039 11 6 2.3677 -4.8985 0.0078 12 6 3.5931 -5.8147 0.0032 13 1 4.1596 -5.6774 0.9242 14 6 3.1489 -7.2716 -0.1182 15 6 4.3187 -8.1638 -0.4402 16 6 4.1840 -9.5221 -0.1786 17 6 5.2132 -10.3961 -0.4586 18 6 6.3905 -9.9197 -1.0052 19 6 6.5287 -8.5713 -1.2621 20 6 5.4946 -7.6898 -0.9767 21 6 5.7153 -6.2275 -1.2723 22 7 4.4449 -5.5033 -1.1567 23 6 4.0665 -4.5755 -2.0899 24 1 3.0183 -4.3866 -2.2694 25 6 5.0298 -3.8777 -2.8054 26 7 6.2937 -3.9430 -2.4440 27 14 4.5325 -2.8457 -4.2809 28 1 3.0633 -2.9379 -4.4768 29 1 4.9119 -1.4296 -4.0451 30 1 5.2266 -3.3488 -5.4934 31 1 -0.3633 0.0024 1.0276 32 1 -0.3632 0.8888 -0.5160 33 1 -0.3633 -0.8913 -0.5117 34 1 2.0138 2.1549 0.0004 35 1 4.4972 1.3252 -0.0130 36 1 3.7500 -3.2868 -0.0012 37 1 1.7652 -5.0938 -0.8794 38 1 1.7729 -5.0913 0.9006 39 1 2.7037 -7.5902 0.8243 40 1 2.4057 -7.3549 -0.9111 41 1 3.2648 -9.8965 0.2475 42 1 5.1000 -11.4500 -0.2517 43 1 7.1983 -10.6002 -1.2304 44 1 7.4481 -8.1986 -1.6887 45 1 6.1052 -6.1168 -2.2841 46 1 6.4325 -5.8179 -0.5610 47 1 6.9670 -3.4557 -2.9442 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054042012.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:57:52 Heat of formation + Delta-G solvation = 37.895613 kcal Electronic energy + Delta-G solvation = -29817.280236 eV Core-core repulsion = 25965.155741 eV Total energy + Delta-G solvation = -3852.124494 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.20765 -40.84324 -39.91378 -38.07210 -35.46541 -34.57334 -33.37186 -32.97754 -31.89712 -30.88213 -30.14083 -27.98494 -27.39185 -26.57904 -24.57316 -23.30480 -22.90665 -22.39646 -21.39902 -20.71698 -20.11537 -19.47144 -18.11702 -17.74455 -17.05209 -16.69166 -16.43540 -16.26601 -16.03353 -15.81739 -15.53497 -15.18463 -14.85049 -14.63427 -14.56880 -14.48627 -14.04794 -13.88428 -13.74715 -13.60604 -13.53591 -13.29999 -13.14594 -13.12884 -12.83866 -12.64101 -12.57349 -12.50111 -12.29768 -12.18061 -11.91504 -11.62096 -11.33593 -10.90002 -10.71535 -9.97534 -9.66635 -9.54402 -9.27271 -9.04806 -8.70809 -7.91914 -5.35386 0.56138 0.58121 0.62076 1.33314 1.40979 1.47512 1.87377 2.23069 2.35018 2.43492 2.49342 2.97738 3.25952 3.47489 3.81083 4.01320 4.09724 4.21661 4.23444 4.25933 4.29501 4.38276 4.38521 4.42808 4.49652 4.65359 4.70871 4.80757 4.89490 4.90483 4.91031 4.93134 5.04275 5.18150 5.19898 5.21757 5.26422 5.39778 5.47972 5.50402 5.56990 5.66905 5.69937 5.73875 5.84781 6.00468 6.06036 6.26622 6.31805 6.53486 6.71280 7.10986 7.27906 7.75931 8.32001 9.14584 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.014032 B = 0.003761 C = 0.003244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1994.930685 B = 7443.522188 C = 8629.550390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C -0.099 4.099 3 C -0.224 4.224 4 C 0.034 3.966 5 N -0.535 5.535 6 H 0.423 0.577 7 C -0.086 4.086 8 C 0.578 3.422 9 O -0.578 6.578 10 N -0.695 5.695 11 C 0.143 3.857 12 C 0.160 3.840 13 H 0.044 0.956 14 C -0.085 4.085 15 C -0.084 4.084 16 C -0.128 4.128 17 C -0.131 4.131 18 C -0.127 4.127 19 C -0.137 4.137 20 C -0.109 4.109 21 C 0.223 3.777 22 N -0.598 5.598 23 C -0.227 4.227 24 H 0.058 0.942 25 C -0.025 4.025 26 N -0.922 5.922 27 Si 0.934 3.066 28 H -0.289 1.289 29 H -0.288 1.288 30 H -0.295 1.295 31 H 0.069 0.931 32 H 0.080 0.920 33 H 0.053 0.947 34 H 0.167 0.833 35 H 0.206 0.794 36 H 0.406 0.594 37 H 0.048 0.952 38 H 0.079 0.921 39 H 0.096 0.904 40 H 0.067 0.933 41 H 0.140 0.860 42 H 0.148 0.852 43 H 0.142 0.858 44 H 0.115 0.885 45 H 0.061 0.939 46 H 0.017 0.983 47 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.717 -1.047 7.504 7.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.108 4.108 3 C -0.248 4.248 4 C -0.103 4.103 5 N -0.130 5.130 6 H 0.261 0.739 7 C -0.198 4.198 8 C 0.367 3.633 9 O -0.460 6.460 10 N -0.343 5.343 11 C 0.019 3.981 12 C 0.054 3.946 13 H 0.062 0.938 14 C -0.124 4.124 15 C -0.084 4.084 16 C -0.145 4.145 17 C -0.149 4.149 18 C -0.145 4.145 19 C -0.156 4.156 20 C -0.110 4.110 21 C 0.098 3.902 22 N -0.322 5.322 23 C -0.357 4.357 24 H 0.076 0.924 25 C -0.222 4.222 26 N -0.568 5.568 27 Si 0.765 3.235 28 H -0.214 1.214 29 H -0.214 1.214 30 H -0.222 1.222 31 H 0.088 0.912 32 H 0.099 0.901 33 H 0.072 0.928 34 H 0.184 0.816 35 H 0.223 0.777 36 H 0.242 0.758 37 H 0.067 0.933 38 H 0.097 0.903 39 H 0.114 0.886 40 H 0.086 0.914 41 H 0.158 0.842 42 H 0.166 0.834 43 H 0.160 0.840 44 H 0.133 0.867 45 H 0.079 0.921 46 H 0.035 0.965 47 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -2.307 -1.314 7.427 7.887 hybrid contribution 1.031 0.478 -1.358 1.771 sum -1.275 -0.836 6.069 6.258 Atomic orbital electron populations 1.20267 0.89111 1.02393 1.02181 1.20289 0.96487 0.91482 1.02574 1.21068 0.91672 0.99154 1.12856 1.22680 1.00728 0.82570 1.04349 1.42147 1.06930 1.08158 1.55787 0.73913 1.20273 0.85031 0.93294 1.21243 1.17338 0.85563 0.84064 0.76376 1.90704 1.17179 1.84128 1.53978 1.45764 1.09900 1.05927 1.72755 1.21239 0.96005 0.79890 1.01003 1.20838 0.90665 0.92806 0.90308 0.93790 1.20821 0.95382 0.93962 1.02198 1.19650 0.94732 0.94847 0.99149 1.21437 1.00086 0.92143 1.00882 1.21324 0.93329 1.00568 0.99678 1.21309 0.98872 0.94753 0.99588 1.21228 0.98616 0.94244 1.01475 1.20779 0.94443 0.97702 0.98075 1.19355 0.87191 0.84255 0.99404 1.44151 1.19933 1.44313 1.23771 1.19080 0.91387 1.12230 1.13041 0.92429 1.25306 0.95907 0.99507 1.01440 1.70065 1.00221 1.45767 1.40748 0.85723 0.77005 0.79203 0.81605 1.21433 1.21429 1.22181 0.91197 0.90141 0.92797 0.81569 0.77748 0.75782 0.93349 0.90277 0.88578 0.91411 0.84237 0.83431 0.83985 0.86685 0.92092 0.96516 0.93989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.43 9.83 71.24 0.70 -1.73 16 2 C -0.10 -3.20 6.21 -19.56 -0.12 -3.33 16 3 C -0.22 -5.80 10.76 22.01 0.24 -5.56 16 4 C 0.03 0.82 11.89 83.48 0.99 1.82 16 5 N -0.53 -16.16 5.99 -183.62 -1.10 -17.26 16 6 H 0.42 12.38 8.19 -92.70 -0.76 11.62 16 7 C -0.09 -3.06 7.06 40.35 0.28 -2.77 16 8 C 0.58 23.09 7.79 86.45 0.67 23.76 16 9 O -0.58 -25.49 14.80 -4.33 -0.06 -25.55 16 10 N -0.69 -26.56 4.08 -467.08 -1.91 -28.47 16 11 C 0.14 5.21 4.43 86.38 0.38 5.59 16 12 C 0.16 5.87 2.99 44.78 0.13 6.00 16 13 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 14 C -0.08 -2.70 5.21 29.75 0.16 -2.54 16 15 C -0.08 -2.82 5.76 -19.85 -0.11 -2.94 16 16 C -0.13 -3.49 9.59 22.37 0.21 -3.27 16 17 C -0.13 -3.24 10.04 22.20 0.22 -3.02 16 18 C -0.13 -3.43 10.05 22.21 0.22 -3.21 16 19 C -0.14 -4.60 9.62 22.35 0.22 -4.39 16 20 C -0.11 -4.15 5.82 -19.82 -0.12 -4.27 16 21 C 0.22 10.05 4.80 85.63 0.41 10.47 16 22 N -0.60 -26.55 2.86 -680.30 -1.95 -28.50 16 23 C -0.23 -11.16 7.09 84.03 0.60 -10.56 16 24 H 0.06 3.00 6.18 -2.91 -0.02 2.99 16 25 C -0.03 -1.27 5.08 84.86 0.43 -0.84 16 26 N -0.92 -48.07 11.06 21.65 0.24 -47.83 16 27 Si 0.93 43.75 29.57 68.60 2.03 45.78 16 28 H -0.29 -13.97 7.11 99.48 0.71 -13.27 16 29 H -0.29 -13.29 7.11 99.48 0.71 -12.58 16 30 H -0.29 -14.02 7.11 99.48 0.71 -13.31 16 31 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 32 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 33 H 0.05 1.87 6.49 -2.39 -0.02 1.85 16 34 H 0.17 3.25 8.06 -2.91 -0.02 3.22 16 35 H 0.21 3.25 8.06 -2.91 -0.02 3.23 16 36 H 0.41 15.85 6.61 -92.71 -0.61 15.24 16 37 H 0.05 1.97 7.25 -2.38 -0.02 1.95 16 38 H 0.08 2.57 8.14 -2.39 -0.02 2.55 16 39 H 0.10 2.44 8.11 -2.39 -0.02 2.42 16 40 H 0.07 2.26 8.03 -2.39 -0.02 2.24 16 41 H 0.14 3.00 8.05 -2.91 -0.02 2.98 16 42 H 0.15 2.60 8.06 -2.91 -0.02 2.58 16 43 H 0.14 2.94 8.06 -2.91 -0.02 2.91 16 44 H 0.12 3.76 8.05 -2.92 -0.02 3.74 16 45 H 0.06 3.14 6.45 -2.39 -0.02 3.12 16 46 H 0.02 0.82 8.14 -2.38 -0.02 0.80 16 47 H 0.25 12.90 8.31 -92.71 -0.77 12.13 16 Total: -1.00 -63.24 378.39 2.41 -60.83 By element: Atomic # 1 Polarization: 42.16 SS G_CDS: -0.36 Total: 41.79 kcal Atomic # 6 Polarization: -6.31 SS G_CDS: 5.52 Total: -0.79 kcal Atomic # 7 Polarization: -117.34 SS G_CDS: -4.71 Total: -122.06 kcal Atomic # 8 Polarization: -25.49 SS G_CDS: -0.06 Total: -25.55 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 2.03 Total: 45.78 kcal Total: -63.24 2.41 -60.83 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054042012.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.723 kcal (2) G-P(sol) polarization free energy of solvation -63.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.828 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds