Wall clock time and date at job start Tue Mar 31 2020 23:09:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.34488 * 126.83708 * 2 1 4 4 N 1.36456 * 108.85405 * 180.25275 * 3 2 1 5 5 H 0.97003 * 124.84778 * 179.77043 * 4 3 2 6 6 C 1.34652 * 110.29780 * 359.75165 * 4 3 2 7 7 C 1.36769 * 108.40056 * 359.97438 * 6 4 3 8 8 C 1.47265 * 126.94254 * 179.97438 * 7 6 4 9 9 O 1.21633 * 119.99943 * 180.02562 * 8 7 6 10 10 N 1.34776 * 119.99942 * 0.02562 * 8 7 6 11 11 C 1.46504 * 119.99660 * 179.97438 * 10 8 7 12 12 C 1.53003 * 109.46733 * 180.02562 * 11 10 8 13 13 H 1.09007 * 109.76224 * 294.25802 * 12 11 10 14 14 C 1.52786 * 109.81330 * 173.49664 * 12 11 10 15 15 C 1.50597 * 110.85154 * 192.79707 * 14 12 11 16 16 C 1.38965 * 117.64038 * 199.98672 * 15 14 12 17 17 C 1.37908 * 120.58297 * 181.14132 * 16 15 14 18 18 C 1.38268 * 119.82649 * 0.02562 * 17 16 15 19 19 C 1.37959 * 119.71701 * 359.74507 * 18 17 16 20 20 C 1.37679 * 122.83881 * 20.63093 * 15 14 12 21 21 C 1.50811 * 122.33362 * 357.89056 * 20 15 14 22 22 N 1.46684 * 109.68905 * 11.94364 * 21 20 15 23 23 C 1.36939 * 121.31642 * 135.58923 * 22 21 20 24 24 H 1.07995 * 119.99691 * 208.12394 * 23 22 21 25 25 C 1.38811 * 120.00133 * 28.12296 * 23 22 21 26 26 N 1.31627 * 119.99716 * 10.87670 * 25 23 22 27 27 Si 1.86798 * 120.00424 * 190.87677 * 25 23 22 28 28 H 1.48501 * 109.46957 * 59.99611 * 27 25 23 29 29 H 1.48500 * 109.47259 * 180.02562 * 27 25 23 30 30 H 1.48512 * 109.46687 * 300.00049 * 27 25 23 31 31 H 1.09001 * 109.46914 * 270.15206 * 1 2 3 32 32 H 1.09008 * 109.46555 * 30.14473 * 1 2 3 33 33 H 1.08992 * 109.47617 * 150.14632 * 1 2 3 34 34 H 1.07991 * 125.57227 * 0.04221 * 3 2 1 35 35 H 1.08006 * 125.79675 * 180.02562 * 6 4 3 36 36 H 0.96999 * 119.99955 * 0.02562 * 10 8 7 37 37 H 1.08996 * 109.47018 * 60.00013 * 11 10 8 38 38 H 1.09000 * 109.47081 * 299.99984 * 11 10 8 39 39 H 1.09006 * 109.20288 * 72.44597 * 14 12 11 40 40 H 1.08999 * 109.20539 * 313.15234 * 14 12 11 41 41 H 1.08004 * 119.70794 * 1.11266 * 16 15 14 42 42 H 1.07998 * 120.08988 * 179.97438 * 17 16 15 43 43 H 1.07994 * 120.14201 * 179.76796 * 18 17 16 44 44 H 1.08004 * 119.74906 * 180.02562 * 19 18 17 45 45 H 1.08999 * 109.43759 * 132.01185 * 21 20 15 46 46 H 1.09003 * 109.43549 * 251.92521 * 21 20 15 47 47 H 0.97001 * 119.99365 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3133 1.0764 0.0000 4 7 3.6112 0.6551 -0.0057 5 1 4.3841 1.2412 -0.0101 6 6 3.6656 -0.6903 -0.0040 7 6 2.3863 -1.1741 0.0036 8 6 1.9748 -2.5881 0.0073 9 8 0.7935 -2.8777 0.0136 10 7 2.9072 -3.5613 0.0038 11 6 2.4978 -4.9680 0.0081 12 6 3.7403 -5.8607 0.0034 13 1 4.2810 -5.7350 -0.9347 14 6 3.3284 -7.3225 0.1707 15 6 4.5240 -8.1843 0.4803 16 6 4.4125 -9.5495 0.2463 17 6 5.4619 -10.3981 0.5304 18 6 6.6361 -9.8886 1.0532 19 6 6.7513 -8.5330 1.2821 20 6 5.6979 -7.6771 0.9904 21 6 5.8993 -6.2032 1.2385 22 7 4.6140 -5.5042 1.1333 23 6 4.2418 -4.5571 2.0497 24 1 3.1953 -4.3833 2.2518 25 6 5.2096 -3.8205 2.7187 26 7 6.4651 -3.8739 2.3268 27 14 4.7305 -2.7535 4.1752 28 1 4.1299 -3.6030 5.2348 29 1 5.9380 -2.0741 4.7096 30 1 3.7423 -1.7345 3.7383 31 1 -0.3633 0.0027 1.0277 32 1 -0.3633 0.8888 -0.5161 33 1 -0.3634 -0.8912 -0.5115 34 1 1.9869 2.1058 0.0006 35 1 4.5664 -1.2862 -0.0071 36 1 3.8493 -3.3303 -0.0009 37 1 1.8981 -5.1745 -0.8783 38 1 1.9077 -5.1718 0.9016 39 1 2.8639 -7.6718 -0.7515 40 1 2.6089 -7.4013 0.9857 41 1 3.4958 -9.9497 -0.1612 42 1 5.3665 -11.4579 0.3458 43 1 7.4597 -10.5489 1.2811 44 1 7.6685 -8.1344 1.6901 45 1 6.3113 -6.0564 2.2369 46 1 6.5912 -5.8020 0.4980 47 1 7.1413 -3.3589 2.7942 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054061178.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:09:59 Heat of formation + Delta-G solvation = 54.779234 kcal Electronic energy + Delta-G solvation = -29749.014710 eV Core-core repulsion = 25897.622344 eV Total energy + Delta-G solvation = -3851.392366 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.82838 -39.39368 -38.34717 -36.43551 -33.60781 -32.88601 -32.11503 -31.42007 -30.51615 -29.47262 -28.65031 -26.26432 -25.62986 -25.33565 -22.86266 -22.28631 -21.53569 -20.92260 -19.45495 -19.16370 -18.62763 -18.02080 -16.46358 -16.19703 -15.56479 -15.33039 -14.93564 -14.53861 -14.49553 -14.20729 -14.09465 -13.63735 -13.51599 -13.33921 -13.10743 -12.89520 -12.61048 -12.56993 -12.42344 -12.36627 -12.06829 -12.01315 -11.61700 -11.53336 -11.13793 -11.02433 -10.87225 -10.83972 -10.69411 -10.51078 -10.18790 -10.00025 -9.69115 -9.13078 -8.75627 -8.38474 -8.23716 -8.05435 -7.93879 -7.84506 -6.80946 -5.92080 -3.35671 1.87364 1.94893 2.23252 2.68453 3.33654 3.36414 3.43384 3.47454 4.05699 4.24763 4.29953 4.39541 5.16001 5.18619 5.23826 5.30231 5.35458 5.37289 5.46722 5.47887 5.58966 5.67242 5.75499 5.86372 5.97034 5.98113 6.08004 6.10897 6.13857 6.17519 6.21621 6.33613 6.35214 6.45975 6.55734 6.58844 6.64183 6.85830 6.94968 6.96427 7.10487 7.14448 7.19073 7.20093 7.32917 7.51060 7.64156 7.69322 7.74618 8.26351 8.50684 9.08072 9.13147 9.67471 10.25735 11.16615 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.014223 B = 0.003721 C = 0.003210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1968.124169 B = 7522.617989 C = 8720.866694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C -0.115 4.115 3 C -0.037 4.037 4 N -0.554 5.554 5 H 0.414 0.586 6 C 0.056 3.944 7 C -0.219 4.219 8 C 0.583 3.417 9 O -0.569 6.569 10 N -0.694 5.694 11 C 0.139 3.861 12 C 0.158 3.842 13 H 0.041 0.959 14 C -0.091 4.091 15 C -0.067 4.067 16 C -0.128 4.128 17 C -0.140 4.140 18 C -0.131 4.131 19 C -0.124 4.124 20 C -0.077 4.077 21 C 0.208 3.792 22 N -0.588 5.588 23 C -0.240 4.240 24 H 0.073 0.927 25 C 0.008 3.992 26 N -0.908 5.908 27 Si 0.893 3.107 28 H -0.284 1.284 29 H -0.292 1.292 30 H -0.279 1.279 31 H 0.060 0.940 32 H 0.052 0.948 33 H 0.078 0.922 34 H 0.163 0.837 35 H 0.176 0.824 36 H 0.412 0.588 37 H 0.056 0.944 38 H 0.065 0.935 39 H 0.063 0.937 40 H 0.074 0.926 41 H 0.111 0.889 42 H 0.110 0.890 43 H 0.112 0.888 44 H 0.117 0.883 45 H 0.096 0.904 46 H 0.042 0.958 47 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.459 1.447 -6.223 6.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.122 4.122 3 C -0.164 4.164 4 N -0.148 5.148 5 H 0.250 0.750 6 C -0.080 4.080 7 C -0.230 4.230 8 C 0.371 3.629 9 O -0.450 6.450 10 N -0.345 5.345 11 C 0.014 3.986 12 C 0.051 3.949 13 H 0.059 0.941 14 C -0.130 4.130 15 C -0.067 4.067 16 C -0.146 4.146 17 C -0.159 4.159 18 C -0.149 4.149 19 C -0.142 4.142 20 C -0.079 4.079 21 C 0.082 3.918 22 N -0.311 5.311 23 C -0.369 4.369 24 H 0.090 0.910 25 C -0.190 4.190 26 N -0.553 5.553 27 Si 0.723 3.277 28 H -0.210 1.210 29 H -0.218 1.218 30 H -0.204 1.204 31 H 0.078 0.922 32 H 0.071 0.929 33 H 0.097 0.903 34 H 0.180 0.820 35 H 0.193 0.807 36 H 0.250 0.750 37 H 0.074 0.926 38 H 0.083 0.917 39 H 0.081 0.919 40 H 0.092 0.908 41 H 0.129 0.871 42 H 0.128 0.872 43 H 0.130 0.870 44 H 0.135 0.865 45 H 0.114 0.886 46 H 0.060 0.940 47 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -2.057 1.453 -6.136 6.633 hybrid contribution 0.905 0.742 1.061 1.580 sum -1.152 2.195 -5.075 5.648 Atomic orbital electron populations 1.20140 0.89713 1.02103 1.01661 1.20525 0.95419 0.90634 1.05573 1.21452 0.82711 0.98844 1.13372 1.41462 1.08019 1.06826 1.58503 0.74997 1.22136 0.99195 0.83492 1.03146 1.20441 0.92409 0.93160 1.16953 1.17340 0.85361 0.84087 0.76084 1.90663 1.17521 1.84004 1.52831 1.45740 1.10385 1.05219 1.73112 1.21182 0.96008 0.80577 1.00793 1.20721 0.91153 0.91189 0.91876 0.94086 1.20887 0.95277 0.96010 1.00835 1.19498 0.95269 0.93244 0.98734 1.21127 0.98472 0.93367 1.01608 1.20848 0.94235 0.98848 1.01926 1.20948 0.97617 0.95404 1.00937 1.21113 0.98892 0.93178 1.01045 1.21021 0.92408 0.99390 0.95078 1.19778 0.87765 0.82012 1.02198 1.44032 1.17503 1.43746 1.25859 1.19117 0.92507 1.10725 1.14554 0.90973 1.24978 0.95877 0.98139 0.99997 1.69965 1.00387 1.43955 1.41008 0.86484 0.77247 0.80726 0.83242 1.21027 1.21774 1.20447 0.92176 0.92925 0.90345 0.81951 0.80669 0.75031 0.92562 0.91718 0.91858 0.90767 0.87079 0.87152 0.87035 0.86511 0.88581 0.94043 0.93539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.16 9.97 36.00 0.36 -0.80 16 2 C -0.11 -1.86 6.35 -102.54 -0.65 -2.51 16 3 C -0.04 -0.48 11.82 -16.82 -0.20 -0.67 16 4 N -0.55 -6.90 5.90 -12.85 -0.08 -6.97 16 5 H 0.41 3.63 8.96 -40.82 -0.37 3.26 16 6 C 0.06 0.88 11.40 -16.85 -0.19 0.69 16 7 C -0.22 -4.00 6.29 -103.35 -0.65 -4.65 16 8 C 0.58 11.90 7.81 -12.59 -0.10 11.80 16 9 O -0.57 -12.85 15.32 5.25 0.08 -12.77 16 10 N -0.69 -13.52 4.00 -61.43 -0.25 -13.76 16 11 C 0.14 2.60 4.46 -4.04 -0.02 2.58 16 12 C 0.16 2.97 3.02 -67.65 -0.20 2.76 16 13 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 14 C -0.09 -1.54 5.21 -28.04 -0.15 -1.69 16 15 C -0.07 -1.21 5.76 -104.61 -0.60 -1.81 16 16 C -0.13 -2.00 9.59 -39.43 -0.38 -2.38 16 17 C -0.14 -2.07 10.04 -39.69 -0.40 -2.46 16 18 C -0.13 -1.99 10.05 -39.67 -0.40 -2.39 16 19 C -0.12 -2.14 9.62 -39.46 -0.38 -2.52 16 20 C -0.08 -1.50 5.82 -104.55 -0.61 -2.11 16 21 C 0.21 4.55 4.80 -5.04 -0.02 4.53 16 22 N -0.59 -12.94 2.85 -166.40 -0.47 -13.41 16 23 C -0.24 -5.80 6.95 -15.06 -0.10 -5.90 16 24 H 0.07 1.84 6.18 -52.49 -0.32 1.51 16 25 C 0.01 0.21 5.08 -17.43 -0.09 0.12 16 26 N -0.91 -23.15 11.06 55.49 0.61 -22.53 16 27 Si 0.89 20.84 29.57 -169.99 -5.03 15.81 16 28 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 29 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 30 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 31 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 32 H 0.05 0.61 8.14 -51.92 -0.42 0.19 16 33 H 0.08 1.30 6.86 -51.93 -0.36 0.95 16 34 H 0.16 1.53 8.06 -52.49 -0.42 1.11 16 35 H 0.18 2.63 7.45 -52.48 -0.39 2.24 16 36 H 0.41 8.17 6.28 -40.82 -0.26 7.92 16 37 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 38 H 0.06 1.32 7.32 -51.93 -0.38 0.94 16 39 H 0.06 0.92 8.10 -51.93 -0.42 0.50 16 40 H 0.07 1.30 8.02 -51.93 -0.42 0.89 16 41 H 0.11 1.49 8.05 -52.48 -0.42 1.07 16 42 H 0.11 1.32 8.06 -52.49 -0.42 0.90 16 43 H 0.11 1.39 8.06 -52.49 -0.42 0.97 16 44 H 0.12 1.89 8.05 -52.48 -0.42 1.47 16 45 H 0.10 2.37 6.45 -51.93 -0.34 2.03 16 46 H 0.04 0.96 8.14 -51.93 -0.42 0.54 16 47 H 0.25 6.45 8.31 -40.82 -0.34 6.11 16 LS Contribution 379.02 15.07 5.71 5.71 Total: -1.00 -29.67 379.02 -10.81 -40.48 By element: Atomic # 1 Polarization: 21.47 SS G_CDS: -6.61 Total: 14.86 kcal Atomic # 6 Polarization: -2.62 SS G_CDS: -4.78 Total: -7.41 kcal Atomic # 7 Polarization: -56.50 SS G_CDS: -0.18 Total: -56.68 kcal Atomic # 8 Polarization: -12.85 SS G_CDS: 0.08 Total: -12.77 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.03 Total: 15.81 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -29.67 -10.81 -40.48 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054061178.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.255 kcal (2) G-P(sol) polarization free energy of solvation -29.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.476 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds