Wall clock time and date at job start Tue Mar 31 2020 23:09:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.34488 * 126.83708 * 2 1 4 4 N 1.36456 * 108.85405 * 180.25275 * 3 2 1 5 5 H 0.97003 * 124.84778 * 179.77043 * 4 3 2 6 6 C 1.34652 * 110.29780 * 359.75165 * 4 3 2 7 7 C 1.36769 * 108.40056 * 359.97438 * 6 4 3 8 8 C 1.47265 * 126.94254 * 179.97438 * 7 6 4 9 9 O 1.21633 * 119.99943 * 180.02562 * 8 7 6 10 10 N 1.34776 * 119.99942 * 0.02562 * 8 7 6 11 11 C 1.46504 * 119.99660 * 179.97438 * 10 8 7 12 12 C 1.53003 * 109.46733 * 180.02562 * 11 10 8 13 13 H 1.09007 * 109.76224 * 294.25802 * 12 11 10 14 14 C 1.52786 * 109.81330 * 173.49664 * 12 11 10 15 15 C 1.50597 * 110.85154 * 192.79707 * 14 12 11 16 16 C 1.38965 * 117.64038 * 199.98672 * 15 14 12 17 17 C 1.37908 * 120.58297 * 181.14132 * 16 15 14 18 18 C 1.38268 * 119.82649 * 0.02562 * 17 16 15 19 19 C 1.37959 * 119.71701 * 359.74507 * 18 17 16 20 20 C 1.37679 * 122.83881 * 20.63093 * 15 14 12 21 21 C 1.50811 * 122.33362 * 357.89056 * 20 15 14 22 22 N 1.46684 * 109.68905 * 11.94364 * 21 20 15 23 23 C 1.36939 * 121.31642 * 135.58923 * 22 21 20 24 24 H 1.07995 * 119.99691 * 208.12394 * 23 22 21 25 25 C 1.38811 * 120.00133 * 28.12296 * 23 22 21 26 26 N 1.31627 * 119.99716 * 10.87670 * 25 23 22 27 27 Si 1.86798 * 120.00424 * 190.87677 * 25 23 22 28 28 H 1.48501 * 109.46957 * 59.99611 * 27 25 23 29 29 H 1.48500 * 109.47259 * 180.02562 * 27 25 23 30 30 H 1.48512 * 109.46687 * 300.00049 * 27 25 23 31 31 H 1.09001 * 109.46914 * 270.15206 * 1 2 3 32 32 H 1.09008 * 109.46555 * 30.14473 * 1 2 3 33 33 H 1.08992 * 109.47617 * 150.14632 * 1 2 3 34 34 H 1.07991 * 125.57227 * 0.04221 * 3 2 1 35 35 H 1.08006 * 125.79675 * 180.02562 * 6 4 3 36 36 H 0.96999 * 119.99955 * 0.02562 * 10 8 7 37 37 H 1.08996 * 109.47018 * 60.00013 * 11 10 8 38 38 H 1.09000 * 109.47081 * 299.99984 * 11 10 8 39 39 H 1.09006 * 109.20288 * 72.44597 * 14 12 11 40 40 H 1.08999 * 109.20539 * 313.15234 * 14 12 11 41 41 H 1.08004 * 119.70794 * 1.11266 * 16 15 14 42 42 H 1.07998 * 120.08988 * 179.97438 * 17 16 15 43 43 H 1.07994 * 120.14201 * 179.76796 * 18 17 16 44 44 H 1.08004 * 119.74906 * 180.02562 * 19 18 17 45 45 H 1.08999 * 109.43759 * 132.01185 * 21 20 15 46 46 H 1.09003 * 109.43549 * 251.92521 * 21 20 15 47 47 H 0.97001 * 119.99365 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3133 1.0764 0.0000 4 7 3.6112 0.6551 -0.0057 5 1 4.3841 1.2412 -0.0101 6 6 3.6656 -0.6903 -0.0040 7 6 2.3863 -1.1741 0.0036 8 6 1.9748 -2.5881 0.0073 9 8 0.7935 -2.8777 0.0136 10 7 2.9072 -3.5613 0.0038 11 6 2.4978 -4.9680 0.0081 12 6 3.7403 -5.8607 0.0034 13 1 4.2810 -5.7350 -0.9347 14 6 3.3284 -7.3225 0.1707 15 6 4.5240 -8.1843 0.4803 16 6 4.4125 -9.5495 0.2463 17 6 5.4619 -10.3981 0.5304 18 6 6.6361 -9.8886 1.0532 19 6 6.7513 -8.5330 1.2821 20 6 5.6979 -7.6771 0.9904 21 6 5.8993 -6.2032 1.2385 22 7 4.6140 -5.5042 1.1333 23 6 4.2418 -4.5571 2.0497 24 1 3.1953 -4.3833 2.2518 25 6 5.2096 -3.8205 2.7187 26 7 6.4651 -3.8739 2.3268 27 14 4.7305 -2.7535 4.1752 28 1 4.1299 -3.6030 5.2348 29 1 5.9380 -2.0741 4.7096 30 1 3.7423 -1.7345 3.7383 31 1 -0.3633 0.0027 1.0277 32 1 -0.3633 0.8888 -0.5161 33 1 -0.3634 -0.8912 -0.5115 34 1 1.9869 2.1058 0.0006 35 1 4.5664 -1.2862 -0.0071 36 1 3.8493 -3.3303 -0.0009 37 1 1.8981 -5.1745 -0.8783 38 1 1.9077 -5.1718 0.9016 39 1 2.8639 -7.6718 -0.7515 40 1 2.6089 -7.4013 0.9857 41 1 3.4958 -9.9497 -0.1612 42 1 5.3665 -11.4579 0.3458 43 1 7.4597 -10.5489 1.2811 44 1 7.6685 -8.1344 1.6901 45 1 6.3113 -6.0564 2.2369 46 1 6.5912 -5.8020 0.4980 47 1 7.1413 -3.3589 2.7942 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054061178.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:09:58 Heat of formation + Delta-G solvation = 38.743225 kcal Electronic energy + Delta-G solvation = -29749.710083 eV Core-core repulsion = 25897.622344 eV Total energy + Delta-G solvation = -3852.087739 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.01372 -40.81536 -39.85172 -37.99011 -35.26482 -34.47529 -33.27886 -32.95473 -31.94750 -30.93489 -30.04695 -27.38614 -27.34528 -26.77761 -24.52934 -23.69490 -22.87721 -22.36670 -20.80386 -20.56780 -20.07069 -19.18066 -18.14224 -17.68094 -17.07706 -16.81268 -16.40009 -16.10324 -15.99290 -15.70438 -15.47376 -15.12364 -14.85886 -14.73104 -14.54079 -14.33696 -14.00705 -13.95061 -13.72271 -13.54525 -13.53070 -13.26113 -13.19976 -13.08155 -12.76440 -12.60171 -12.51944 -12.26957 -12.25444 -12.14971 -11.85832 -11.58780 -11.28578 -10.71872 -10.63958 -9.86623 -9.52284 -9.40690 -9.24479 -9.12580 -8.63920 -7.85327 -5.28637 0.60404 0.64429 0.88304 1.41360 1.43632 1.50286 1.55113 2.38474 2.47601 2.62680 2.75747 3.00229 3.32937 3.53940 3.87307 4.05724 4.12139 4.19829 4.25377 4.26399 4.33452 4.41904 4.43363 4.48735 4.56454 4.68179 4.72958 4.79992 4.86111 4.94446 4.95332 4.96477 4.99063 5.19353 5.22738 5.24938 5.29103 5.38528 5.46190 5.53794 5.69098 5.72167 5.76602 5.79085 5.90578 6.01431 6.03750 6.29404 6.37932 6.72251 6.92040 7.17619 7.55101 7.82234 8.38188 9.21332 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.014223 B = 0.003721 C = 0.003210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1968.124169 B = 7522.617989 C = 8720.866694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.153 4.153 3 C -0.008 4.008 4 N -0.536 5.536 5 H 0.435 0.565 6 C 0.058 3.942 7 C -0.261 4.261 8 C 0.576 3.424 9 O -0.600 6.600 10 N -0.694 5.694 11 C 0.144 3.856 12 C 0.161 3.839 13 H 0.044 0.956 14 C -0.085 4.085 15 C -0.084 4.084 16 C -0.128 4.128 17 C -0.132 4.132 18 C -0.127 4.127 19 C -0.137 4.137 20 C -0.108 4.108 21 C 0.224 3.776 22 N -0.598 5.598 23 C -0.227 4.227 24 H 0.057 0.943 25 C -0.024 4.024 26 N -0.923 5.923 27 Si 0.936 3.064 28 H -0.294 1.294 29 H -0.290 1.290 30 H -0.285 1.285 31 H 0.053 0.947 32 H 0.086 0.914 33 H 0.049 0.951 34 H 0.209 0.791 35 H 0.176 0.824 36 H 0.409 0.591 37 H 0.073 0.927 38 H 0.044 0.956 39 H 0.095 0.905 40 H 0.066 0.934 41 H 0.139 0.861 42 H 0.148 0.852 43 H 0.143 0.857 44 H 0.116 0.884 45 H 0.061 0.939 46 H 0.017 0.983 47 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.500 0.952 -7.173 7.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.159 4.159 3 C -0.136 4.136 4 N -0.131 5.131 5 H 0.274 0.726 6 C -0.080 4.080 7 C -0.272 4.272 8 C 0.366 3.634 9 O -0.484 6.484 10 N -0.343 5.343 11 C 0.020 3.980 12 C 0.055 3.945 13 H 0.061 0.939 14 C -0.124 4.124 15 C -0.084 4.084 16 C -0.146 4.146 17 C -0.149 4.149 18 C -0.145 4.145 19 C -0.155 4.155 20 C -0.110 4.110 21 C 0.098 3.902 22 N -0.322 5.322 23 C -0.357 4.357 24 H 0.075 0.925 25 C -0.220 4.220 26 N -0.570 5.570 27 Si 0.767 3.233 28 H -0.222 1.222 29 H -0.216 1.216 30 H -0.211 1.211 31 H 0.072 0.928 32 H 0.104 0.896 33 H 0.068 0.932 34 H 0.225 0.775 35 H 0.193 0.807 36 H 0.246 0.754 37 H 0.091 0.909 38 H 0.062 0.938 39 H 0.113 0.887 40 H 0.085 0.915 41 H 0.157 0.843 42 H 0.166 0.834 43 H 0.160 0.840 44 H 0.134 0.866 45 H 0.079 0.921 46 H 0.035 0.965 47 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -2.075 0.962 -7.098 7.457 hybrid contribution 0.923 0.839 1.324 1.819 sum -1.151 1.801 -5.774 6.157 Atomic orbital electron populations 1.20076 0.89272 1.02335 1.01344 1.20852 0.96291 0.90908 1.07884 1.22050 0.81952 0.99941 1.09650 1.41498 1.09039 1.05916 1.56656 0.72552 1.22060 0.98261 0.84951 1.02761 1.20544 0.94298 0.92583 1.19737 1.17799 0.84975 0.85280 0.75357 1.90624 1.18624 1.84683 1.54497 1.45760 1.10109 1.05494 1.72913 1.21161 0.95907 0.80471 1.00507 1.20820 0.90415 0.92610 0.90700 0.93876 1.20821 0.95150 0.94298 1.02093 1.19654 0.94738 0.94745 0.99267 1.21430 1.00007 0.92211 1.00921 1.21322 0.93218 1.00612 0.99776 1.21307 0.98955 0.94541 0.99715 1.21229 0.98445 0.94376 1.01495 1.20800 0.94372 0.97780 0.98009 1.19354 0.87079 0.84281 0.99455 1.44138 1.17942 1.43511 1.26573 1.19012 0.91623 1.10515 1.14584 0.92507 1.25303 0.96004 0.99278 1.01440 1.70063 1.00639 1.44667 1.41618 0.85833 0.76538 0.79494 0.81466 1.22165 1.21623 1.21125 0.92776 0.89566 0.93155 0.77451 0.80736 0.75366 0.90867 0.93803 0.88701 0.91536 0.84290 0.83433 0.83958 0.86632 0.92069 0.96503 0.94049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.13 9.97 71.24 0.71 -1.42 16 2 C -0.15 -4.84 6.35 -18.51 -0.12 -4.96 16 3 C -0.01 -0.18 11.82 83.12 0.98 0.80 16 4 N -0.54 -12.14 5.90 -194.56 -1.15 -13.28 16 5 H 0.43 6.32 8.96 -92.71 -0.83 5.49 16 6 C 0.06 1.79 11.40 83.92 0.96 2.74 16 7 C -0.26 -9.69 6.29 -19.04 -0.12 -9.81 16 8 C 0.58 24.52 7.81 86.62 0.68 25.19 16 9 O -0.60 -28.40 15.32 -4.13 -0.06 -28.47 16 10 N -0.69 -28.19 4.00 -466.51 -1.87 -30.05 16 11 C 0.14 5.56 4.46 86.38 0.38 5.95 16 12 C 0.16 6.16 3.02 44.79 0.14 6.29 16 13 H 0.04 1.66 8.14 -2.38 -0.02 1.64 16 14 C -0.08 -2.81 5.21 29.74 0.16 -2.66 16 15 C -0.08 -2.91 5.76 -19.85 -0.11 -3.03 16 16 C -0.13 -3.60 9.59 22.37 0.21 -3.38 16 17 C -0.13 -3.33 10.04 22.20 0.22 -3.11 16 18 C -0.13 -3.49 10.05 22.21 0.22 -3.27 16 19 C -0.14 -4.68 9.62 22.35 0.22 -4.46 16 20 C -0.11 -4.23 5.82 -19.82 -0.12 -4.35 16 21 C 0.22 10.28 4.80 85.63 0.41 10.69 16 22 N -0.60 -27.34 2.85 -680.36 -1.94 -29.28 16 23 C -0.23 -11.43 6.95 84.03 0.58 -10.84 16 24 H 0.06 3.03 6.18 -2.91 -0.02 3.01 16 25 C -0.02 -1.23 5.08 84.86 0.43 -0.80 16 26 N -0.92 -48.86 11.06 21.65 0.24 -48.62 16 27 Si 0.94 44.09 29.57 68.60 2.03 46.12 16 28 H -0.29 -14.26 7.11 99.48 0.71 -13.55 16 29 H -0.29 -13.51 7.11 99.48 0.71 -12.81 16 30 H -0.28 -13.60 7.11 99.48 0.71 -12.89 16 31 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 32 H 0.09 1.84 8.14 -2.38 -0.02 1.82 16 33 H 0.05 1.73 6.86 -2.39 -0.02 1.71 16 34 H 0.21 2.84 8.06 -2.92 -0.02 2.82 16 35 H 0.18 5.35 7.45 -2.91 -0.02 5.33 16 36 H 0.41 17.01 6.28 -92.71 -0.58 16.42 16 37 H 0.07 2.57 8.14 -2.39 -0.02 2.55 16 38 H 0.04 1.87 7.32 -2.39 -0.02 1.86 16 39 H 0.09 2.54 8.10 -2.38 -0.02 2.52 16 40 H 0.07 2.31 8.02 -2.39 -0.02 2.30 16 41 H 0.14 3.11 8.05 -2.91 -0.02 3.09 16 42 H 0.15 2.68 8.06 -2.91 -0.02 2.66 16 43 H 0.14 3.00 8.06 -2.91 -0.02 2.98 16 44 H 0.12 3.83 8.05 -2.91 -0.02 3.81 16 45 H 0.06 3.19 6.45 -2.39 -0.02 3.18 16 46 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 47 H 0.25 13.08 8.31 -92.71 -0.77 12.31 16 Total: -1.00 -68.08 379.02 2.68 -65.40 By element: Atomic # 1 Polarization: 39.01 SS G_CDS: -0.40 Total: 38.60 kcal Atomic # 6 Polarization: -6.26 SS G_CDS: 5.84 Total: -0.42 kcal Atomic # 7 Polarization: -116.52 SS G_CDS: -4.72 Total: -121.24 kcal Atomic # 8 Polarization: -28.40 SS G_CDS: -0.06 Total: -28.47 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 2.03 Total: 46.12 kcal Total: -68.08 2.68 -65.40 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054061178.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.142 kcal (2) G-P(sol) polarization free energy of solvation -68.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.398 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds