Wall clock time and date at job start Tue Mar 31 2020 22:39:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.35460 * 125.56652 * 2 1 4 4 C 1.39834 * 107.86485 * 179.97438 * 3 2 1 5 5 C 1.37871 * 107.08597 * 359.97438 * 4 3 2 6 6 C 1.46687 * 126.23446 * 180.02562 * 5 4 3 7 7 O 1.21688 * 119.99927 * 175.01996 * 6 5 4 8 8 N 1.34771 * 119.99719 * 355.02480 * 6 5 4 9 9 C 1.46501 * 120.00108 * 185.08655 * 8 6 5 10 10 C 1.50693 * 109.47336 * 179.97438 * 9 8 6 11 11 C 1.38261 * 120.01851 * 90.00111 * 10 9 8 12 12 C 1.38144 * 119.96347 * 180.02562 * 11 10 9 13 13 C 1.38449 * 120.10309 * 359.97438 * 12 11 10 14 14 C 1.38068 * 119.93370 * 0.02562 * 13 12 11 15 15 C 1.38142 * 120.02248 * 269.72282 * 10 9 8 16 16 C 1.50776 * 108.86104 * 180.02562 * 14 13 12 17 17 N 1.46633 * 107.70249 * 0.02562 * 16 14 13 18 18 C 1.36936 * 126.56258 * 179.97438 * 17 16 14 19 19 H 1.08002 * 120.00387 * 0.02562 * 18 17 16 20 20 C 1.38811 * 119.99811 * 179.97438 * 18 17 16 21 21 N 1.31619 * 120.00189 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 120.00040 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.46921 * 90.00218 * 22 20 18 24 24 H 1.48503 * 109.47312 * 210.00171 * 22 20 18 25 25 H 1.48501 * 109.47089 * 330.00647 * 22 20 18 26 26 C 1.46637 * 106.87373 * 359.97438 * 17 16 14 27 27 N 1.35539 * 125.56384 * 179.68882 * 2 1 3 28 28 C 1.46501 * 125.67357 * 0.02562 * 27 2 1 29 29 H 1.08998 * 109.47398 * 90.02371 * 1 2 3 30 30 H 1.08998 * 109.47190 * 210.02812 * 1 2 3 31 31 H 1.09000 * 109.46891 * 330.02785 * 1 2 3 32 32 H 1.07997 * 126.06519 * 359.92153 * 3 2 1 33 33 H 1.07996 * 126.45724 * 180.02562 * 4 3 2 34 34 H 0.97006 * 120.00018 * 5.07756 * 8 6 5 35 35 H 1.09004 * 109.46617 * 299.99942 * 9 8 6 36 36 H 1.09001 * 109.47126 * 59.99115 * 9 8 6 37 37 H 1.07999 * 120.01909 * 359.97311 * 11 10 9 38 38 H 1.07999 * 119.94831 * 179.97438 * 12 11 10 39 39 H 1.08006 * 119.94683 * 0.02562 * 15 10 9 40 40 H 1.09007 * 109.80872 * 119.55218 * 16 14 13 41 41 H 1.09000 * 109.81690 * 240.45067 * 16 14 13 42 42 H 0.97000 * 119.99942 * 179.97438 * 21 20 18 43 43 H 1.08995 * 109.81377 * 240.45208 * 26 17 16 44 44 H 1.09001 * 109.80909 * 119.54440 * 26 17 16 45 45 H 1.09000 * 109.46626 * 95.47372 * 28 27 2 46 46 H 1.09000 * 109.46698 * 215.46849 * 28 27 2 47 47 H 1.08995 * 109.47189 * 335.47120 * 28 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2948 1.1019 0.0000 4 6 3.6270 0.6767 0.0006 5 6 3.6122 -0.7019 0.0015 6 6 4.7860 -1.5816 0.0029 7 8 4.6431 -2.7866 0.0952 8 7 6.0226 -1.0553 -0.0978 9 6 7.1872 -1.9371 -0.2087 10 6 8.4397 -1.1051 -0.3079 11 6 9.1180 -0.7366 0.8392 12 6 10.2657 0.0266 0.7469 13 6 10.7384 0.4228 -0.4926 14 6 10.0611 0.0549 -1.6381 15 6 8.9140 -0.7149 -1.5453 16 6 10.7875 0.6146 -2.8349 17 7 11.9567 1.3501 -2.3430 18 6 12.8837 2.0114 -3.1036 19 1 12.7902 2.0234 -4.1795 20 6 13.9431 2.6672 -2.4917 21 7 14.0569 2.6530 -1.1805 22 14 15.2081 3.5687 -3.5293 23 1 14.7752 4.9755 -3.7259 24 1 16.5220 3.5472 -2.8374 25 1 15.3328 2.9000 -4.8494 26 6 11.9433 1.2420 -0.8807 27 7 2.2952 -1.1025 0.0060 28 6 1.8240 -2.4897 0.0130 29 1 -0.3634 -0.0004 -1.0276 30 1 -0.3633 -0.8897 0.5143 31 1 -0.3633 0.8902 0.5134 32 1 1.9545 2.1268 -0.0012 33 1 4.5024 1.3091 0.0011 34 1 6.1415 -0.0926 -0.0970 35 1 7.2440 -2.5764 0.6724 36 1 7.0907 -2.5559 -1.1008 37 1 8.7502 -1.0446 1.8068 38 1 10.7951 0.3146 1.6431 39 1 8.3863 -1.0063 -2.4414 40 1 11.1097 -0.1989 -3.4851 41 1 10.1303 1.2891 -3.3838 42 1 14.7975 3.1110 -0.7530 43 1 11.8733 2.2353 -0.4374 44 1 12.8521 0.7469 -0.5385 45 1 1.8004 -2.8704 -1.0081 46 1 2.4995 -3.0998 0.6127 47 1 0.8218 -2.5308 0.4395 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054255592.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:39:51 Heat of formation + Delta-G solvation = 67.227186 kcal Electronic energy + Delta-G solvation = -27741.475718 eV Core-core repulsion = 23890.623136 eV Total energy + Delta-G solvation = -3850.852582 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.69757 -39.84598 -39.04667 -36.36893 -34.65859 -33.13781 -32.33677 -32.00907 -31.12507 -29.78105 -27.98338 -26.76352 -26.65380 -25.82796 -24.32063 -22.24209 -22.00584 -20.48951 -20.43338 -20.20140 -19.34424 -17.95464 -17.03175 -16.21090 -16.06478 -15.68359 -15.44681 -15.18107 -14.65292 -14.46728 -14.36022 -14.19070 -14.10877 -13.67532 -13.57008 -13.35669 -13.22511 -13.07356 -13.02467 -12.54901 -12.28549 -12.18106 -12.09443 -11.95575 -11.84964 -11.67743 -11.56078 -11.09235 -10.85330 -10.49314 -10.25406 -10.19115 -10.12806 -9.81276 -9.25566 -8.98630 -8.96910 -8.42969 -8.28175 -8.03794 -6.87140 -5.83217 -3.16507 1.24726 1.54530 1.73694 2.41249 2.45556 3.22754 3.29619 3.36495 3.41187 3.43435 4.13072 4.39500 4.46476 4.49847 4.58410 4.73357 4.77902 4.92894 4.97012 5.12292 5.19449 5.23978 5.24780 5.30622 5.32539 5.41671 5.47370 5.48752 5.56839 5.64136 5.84175 5.85612 5.93675 6.01506 6.09758 6.23973 6.48604 6.53033 6.54319 6.56443 6.74866 6.76033 6.77971 6.94329 7.04106 7.31322 7.32759 7.38946 7.51197 7.67333 8.03660 8.11577 9.09672 9.69535 10.36520 11.30900 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.021614 B = 0.001947 C = 0.001869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1295.135408 B =14380.219287 C =14974.902244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C 0.039 3.961 3 C -0.205 4.205 4 C -0.135 4.135 5 C -0.054 4.054 6 C 0.589 3.411 7 O -0.555 6.555 8 N -0.711 5.711 9 C 0.174 3.826 10 C -0.133 4.133 11 C -0.102 4.102 12 C -0.112 4.112 13 C -0.080 4.080 14 C -0.107 4.107 15 C -0.082 4.082 16 C 0.175 3.825 17 N -0.601 5.601 18 C -0.226 4.226 19 H 0.084 0.916 20 C -0.007 4.007 21 N -0.923 5.923 22 Si 0.918 3.082 23 H -0.287 1.287 24 H -0.289 1.289 25 H -0.280 1.280 26 C 0.205 3.795 27 N -0.408 5.408 28 C 0.067 3.933 29 H 0.074 0.926 30 H 0.064 0.936 31 H 0.083 0.917 32 H 0.142 0.858 33 H 0.145 0.855 34 H 0.406 0.594 35 H 0.076 0.924 36 H 0.074 0.926 37 H 0.119 0.881 38 H 0.121 0.879 39 H 0.117 0.883 40 H 0.037 0.963 41 H 0.037 0.963 42 H 0.255 0.745 43 H 0.065 0.935 44 H 0.065 0.935 45 H 0.075 0.925 46 H 0.101 0.899 47 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.229 -7.172 4.982 26.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.078 4.078 3 C -0.229 4.229 4 C -0.162 4.162 5 C -0.167 4.167 6 C 0.377 3.623 7 O -0.436 6.436 8 N -0.362 5.362 9 C 0.051 3.949 10 C -0.134 4.134 11 C -0.121 4.121 12 C -0.131 4.131 13 C -0.081 4.081 14 C -0.107 4.107 15 C -0.101 4.101 16 C 0.050 3.950 17 N -0.327 5.327 18 C -0.353 4.353 19 H 0.102 0.898 20 C -0.204 4.204 21 N -0.570 5.570 22 Si 0.748 3.252 23 H -0.214 1.214 24 H -0.216 1.216 25 H -0.205 1.205 26 C 0.081 3.919 27 N -0.082 5.082 28 C -0.075 4.075 29 H 0.093 0.907 30 H 0.083 0.917 31 H 0.102 0.898 32 H 0.160 0.840 33 H 0.163 0.837 34 H 0.241 0.759 35 H 0.094 0.906 36 H 0.092 0.908 37 H 0.137 0.863 38 H 0.139 0.861 39 H 0.135 0.865 40 H 0.054 0.946 41 H 0.054 0.946 42 H 0.065 0.935 43 H 0.082 0.918 44 H 0.082 0.918 45 H 0.094 0.906 46 H 0.119 0.881 47 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -25.189 -8.313 5.041 27.000 hybrid contribution 0.801 0.968 -0.463 1.339 sum -24.387 -7.345 4.579 25.877 Atomic orbital electron populations 1.20390 0.87786 1.03398 1.02898 1.20576 0.93770 0.85876 1.07575 1.20627 0.92446 0.97799 1.12032 1.21386 0.98033 0.91974 1.04783 1.19993 0.84254 0.93565 1.18914 1.16977 0.82316 0.86732 0.76282 1.90770 1.86418 1.14957 1.51430 1.45810 1.05039 1.11062 1.74306 1.20110 0.81037 0.91089 1.02623 1.19435 0.97456 1.02930 0.93552 1.20829 0.95422 0.98440 0.97380 1.20501 0.96581 0.99224 0.96765 1.21558 0.97752 0.95821 0.92955 1.20722 0.95151 0.97678 0.97183 1.20305 0.95445 0.97732 0.96664 1.19707 0.88912 0.94306 0.92100 1.43955 1.26086 1.60994 1.01675 1.18979 1.01313 1.25190 0.89865 0.89846 1.24842 0.98869 1.00651 0.96034 1.69921 1.32514 1.47275 1.07293 0.86021 0.80598 0.79568 0.78985 1.21438 1.21552 1.20546 1.19744 0.90617 0.96570 0.84986 1.43733 1.04619 1.06558 1.53268 1.22223 1.01328 0.79724 1.04180 0.90706 0.91667 0.89812 0.83996 0.83698 0.75891 0.90625 0.90764 0.86287 0.86089 0.86518 0.94589 0.94576 0.93456 0.91753 0.91773 0.90640 0.88065 0.89991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.45 10.07 36.00 0.36 -0.09 16 2 C 0.04 0.35 6.87 -81.95 -0.56 -0.22 16 3 C -0.21 -1.93 10.71 -39.98 -0.43 -2.35 16 4 C -0.14 -1.40 10.35 -39.12 -0.41 -1.80 16 5 C -0.05 -0.63 6.89 -81.98 -0.56 -1.20 16 6 C 0.59 7.52 7.77 -12.85 -0.10 7.42 16 7 O -0.56 -8.36 14.78 5.20 0.08 -8.28 16 8 N -0.71 -8.05 5.53 -62.80 -0.35 -8.39 16 9 C 0.17 2.05 5.81 -5.20 -0.03 2.02 16 10 C -0.13 -1.79 5.25 -104.65 -0.55 -2.34 16 11 C -0.10 -1.40 9.70 -39.61 -0.38 -1.79 16 12 C -0.11 -1.83 10.05 -39.54 -0.40 -2.23 16 13 C -0.08 -1.58 6.22 -104.57 -0.65 -2.23 16 14 C -0.11 -2.00 6.22 -104.57 -0.65 -2.65 16 15 C -0.08 -1.25 9.70 -39.54 -0.38 -1.63 16 16 C 0.18 3.72 7.25 -5.08 -0.04 3.69 16 17 N -0.60 -15.45 3.41 -175.67 -0.60 -16.05 16 18 C -0.23 -6.22 10.32 -15.06 -0.16 -6.38 16 19 H 0.08 2.19 7.83 -52.49 -0.41 1.78 16 20 C -0.01 -0.21 5.49 -17.43 -0.10 -0.30 16 21 N -0.92 -26.54 10.44 55.49 0.58 -25.96 16 22 Si 0.92 21.69 29.55 -169.99 -5.02 16.67 16 23 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 24 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 25 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 26 C 0.21 4.99 5.39 -5.08 -0.03 4.96 16 27 N -0.41 -4.20 3.16 -115.62 -0.37 -4.57 16 28 C 0.07 0.53 10.32 59.85 0.62 1.15 16 29 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.06 0.27 6.91 -51.93 -0.36 -0.09 16 31 H 0.08 0.34 8.14 -51.93 -0.42 -0.09 16 32 H 0.14 1.05 8.06 -52.49 -0.42 0.63 16 33 H 0.15 1.24 7.45 -52.49 -0.39 0.85 16 34 H 0.41 4.09 7.36 -40.82 -0.30 3.79 16 35 H 0.08 0.88 8.09 -51.93 -0.42 0.46 16 36 H 0.07 0.88 8.08 -51.93 -0.42 0.46 16 37 H 0.12 1.35 8.06 -52.49 -0.42 0.93 16 38 H 0.12 1.79 8.06 -52.49 -0.42 1.37 16 39 H 0.12 1.55 8.06 -52.48 -0.42 1.13 16 40 H 0.04 0.75 8.14 -51.92 -0.42 0.33 16 41 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 42 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 43 H 0.06 1.71 7.49 -51.93 -0.39 1.32 16 44 H 0.06 1.71 7.49 -51.93 -0.39 1.32 16 45 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 46 H 0.10 0.97 6.55 -51.93 -0.34 0.63 16 47 H 0.08 0.42 6.80 -51.93 -0.35 0.07 16 LS Contribution 387.88 15.07 5.85 5.85 Total: -1.00 -32.55 387.88 -10.99 -43.53 By element: Atomic # 1 Polarization: 9.88 SS G_CDS: -6.71 Total: 3.17 kcal Atomic # 6 Polarization: -1.52 SS G_CDS: -4.44 Total: -5.96 kcal Atomic # 7 Polarization: -54.24 SS G_CDS: -0.73 Total: -54.97 kcal Atomic # 8 Polarization: -8.36 SS G_CDS: 0.08 Total: -8.28 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -32.55 -10.99 -43.53 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054255592.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.762 kcal (2) G-P(sol) polarization free energy of solvation -32.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.535 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds