Wall clock time and date at job start Tue Mar 31 2020 22:46:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.39836 * 126.45421 * 2 1 4 4 C 1.35456 * 107.86308 * 179.71877 * 3 2 1 5 5 N 1.35536 * 108.87160 * 0.43207 * 4 3 2 6 6 C 1.46498 * 125.67731 * 179.82578 * 5 4 3 7 7 C 1.37655 * 108.63977 * 359.56429 * 5 4 3 8 8 C 1.46679 * 126.22821 * 180.23956 * 7 5 4 9 9 O 1.21698 * 119.99848 * 99.34549 * 8 7 5 10 10 N 1.34771 * 120.00422 * 279.34685 * 8 7 5 11 11 C 1.46501 * 120.00327 * 185.15675 * 10 8 7 12 12 C 1.50702 * 109.47172 * 179.97438 * 11 10 8 13 13 C 1.38245 * 120.02029 * 89.99996 * 12 11 10 14 14 C 1.38149 * 119.96593 * 179.97438 * 13 12 11 15 15 C 1.38449 * 120.09914 * 359.97438 * 14 13 12 16 16 C 1.38067 * 119.93600 * 0.02562 * 15 14 13 17 17 C 1.38151 * 120.01716 * 269.72586 * 12 11 10 18 18 C 1.50769 * 108.86261 * 180.02562 * 16 15 14 19 19 N 1.46642 * 107.70207 * 359.97438 * 18 16 15 20 20 C 1.36933 * 126.56281 * 179.97438 * 19 18 16 21 21 H 1.08002 * 120.00442 * 0.02562 * 20 19 18 22 22 C 1.38816 * 119.99968 * 179.97438 * 20 19 18 23 23 N 1.31618 * 119.99710 * 0.02562 * 22 20 19 24 24 Si 1.86795 * 120.00307 * 180.02562 * 22 20 19 25 25 H 1.48502 * 109.47216 * 90.00127 * 24 22 20 26 26 H 1.48497 * 109.47344 * 210.00205 * 24 22 20 27 27 H 1.48498 * 109.47122 * 330.00714 * 24 22 20 28 28 C 1.46634 * 106.86954 * 0.02562 * 19 18 16 29 29 H 1.08998 * 109.46653 * 270.01973 * 1 2 3 30 30 H 1.08997 * 109.47169 * 30.01842 * 1 2 3 31 31 H 1.09003 * 109.47050 * 150.02545 * 1 2 3 32 32 H 1.07997 * 126.07180 * 359.97438 * 3 2 1 33 33 H 1.07998 * 125.56630 * 180.25991 * 4 3 2 34 34 H 1.08997 * 109.47381 * 264.60434 * 6 5 4 35 35 H 1.08999 * 109.46671 * 144.60951 * 6 5 4 36 36 H 1.09001 * 109.47035 * 24.61336 * 6 5 4 37 37 H 0.97008 * 119.99971 * 5.15402 * 10 8 7 38 38 H 1.08996 * 109.47370 * 300.00057 * 11 10 8 39 39 H 1.08998 * 109.46971 * 60.00066 * 11 10 8 40 40 H 1.08001 * 120.01882 * 359.97438 * 13 12 11 41 41 H 1.07993 * 119.94849 * 180.02562 * 14 13 12 42 42 H 1.07998 * 119.95248 * 359.97438 * 17 12 11 43 43 H 1.09008 * 109.81429 * 119.54630 * 18 16 15 44 44 H 1.09004 * 109.81658 * 240.45501 * 18 16 15 45 45 H 0.97000 * 120.00042 * 179.97438 * 23 22 20 46 46 H 1.09002 * 109.80809 * 240.44884 * 28 19 18 47 47 H 1.08998 * 109.81445 * 119.55090 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3379 1.1247 0.0000 4 6 3.6218 0.6929 0.0063 5 7 3.6285 -0.6624 0.0006 6 6 4.8227 -1.5110 0.0010 7 6 2.3263 -1.1088 0.0004 8 6 1.8900 -2.5092 0.0000 9 8 1.5455 -3.0395 1.0398 10 7 1.8706 -3.2087 -1.1518 11 6 1.3291 -4.5698 -1.1732 12 6 1.4224 -5.1257 -2.5708 13 6 2.5524 -5.8172 -2.9661 14 6 2.6366 -6.3268 -4.2474 15 6 1.5907 -6.1465 -5.1364 16 6 0.4622 -5.4559 -4.7417 17 6 0.3765 -4.9494 -3.4560 18 6 -0.5087 -5.4091 -5.8942 19 7 0.1037 -6.1184 -7.0222 20 6 -0.4459 -6.3078 -8.2620 21 1 -1.4272 -5.9149 -8.4835 22 6 0.2587 -7.0039 -9.2346 23 7 1.4548 -7.4824 -8.9648 24 14 -0.4907 -7.2617 -10.9261 25 1 -0.1114 -6.1326 -11.8129 26 1 0.0132 -8.5343 -11.5021 27 1 -1.9697 -7.3231 -10.8081 28 6 1.4167 -6.5870 -6.5678 29 1 -0.3632 0.0004 1.0277 30 1 -0.3633 0.8898 -0.5141 31 1 -0.3633 -0.8902 -0.5135 32 1 2.0136 2.1549 -0.0004 33 1 4.4972 1.3253 0.0119 34 1 5.0663 -1.7959 -1.0225 35 1 4.6316 -2.4068 0.5918 36 1 5.6586 -0.9616 0.4341 37 1 2.2152 -2.8110 -1.9667 38 1 1.9018 -5.1995 -0.4923 39 1 0.2855 -4.5506 -0.8592 40 1 3.3689 -5.9590 -2.2735 41 1 3.5192 -6.8672 -4.5557 42 1 -0.5081 -4.4134 -3.1455 43 1 -1.4411 -5.8984 -5.6120 44 1 -0.7034 -4.3731 -6.1716 45 1 1.9470 -7.9692 -9.6443 46 1 2.1998 -6.1490 -7.1867 47 1 1.4621 -7.6744 -6.6280 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054262503.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:46:15 Heat of formation + Delta-G solvation = 50.869550 kcal Electronic energy + Delta-G solvation = -28084.002887 eV Core-core repulsion = 24232.440984 eV Total energy + Delta-G solvation = -3851.561902 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.33058 -41.18752 -40.14237 -37.88901 -35.79994 -34.61663 -34.12096 -32.60879 -31.60635 -31.05784 -29.55271 -28.62838 -27.67650 -26.31174 -25.78298 -23.68785 -23.11524 -22.12075 -21.50544 -21.15895 -20.33665 -19.01279 -18.51305 -17.44340 -17.21462 -16.88887 -16.50617 -16.11961 -16.09315 -16.01346 -15.85136 -15.55067 -15.05603 -14.78340 -14.52018 -14.39830 -14.17080 -13.98087 -13.63139 -13.56918 -13.48624 -13.48372 -13.34625 -13.07871 -13.04433 -12.86599 -12.83023 -12.70929 -12.45746 -12.11337 -12.00695 -11.84418 -11.67002 -11.36873 -10.92535 -10.25234 -9.74171 -9.61753 -9.45002 -9.04502 -8.86374 -7.94719 -5.31588 0.23064 0.43189 0.92115 1.24207 1.45461 1.48033 1.56918 1.91808 1.97622 2.37183 2.43920 2.84530 3.27837 3.42466 3.52385 3.70723 3.82148 3.90373 3.95310 4.11500 4.23478 4.29254 4.35095 4.36772 4.42901 4.48334 4.62226 4.63383 4.69335 4.75770 4.81953 4.82478 4.86484 4.95162 5.12499 5.14988 5.15717 5.22195 5.28074 5.30491 5.42013 5.44408 5.50563 5.53859 5.84712 5.93220 6.02189 6.07745 6.08543 6.34955 6.39816 6.99322 7.01014 7.64063 8.31854 9.18496 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.018100 B = 0.002144 C = 0.002095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1546.629533 B =13059.387615 C =13359.573409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C -0.129 4.129 3 C -0.220 4.220 4 C 0.017 3.983 5 N -0.427 5.427 6 C 0.061 3.939 7 C -0.078 4.078 8 C 0.599 3.401 9 O -0.568 6.568 10 N -0.701 5.701 11 C 0.174 3.826 12 C -0.110 4.110 13 C -0.086 4.086 14 C -0.111 4.111 15 C -0.110 4.110 16 C -0.117 4.117 17 C -0.075 4.075 18 C 0.171 3.829 19 N -0.625 5.625 20 C -0.245 4.245 21 H 0.090 0.910 22 C -0.064 4.064 23 N -0.952 5.952 24 Si 0.988 3.012 25 H -0.283 1.283 26 H -0.292 1.292 27 H -0.266 1.266 28 C 0.221 3.779 29 H 0.064 0.936 30 H 0.082 0.918 31 H 0.049 0.951 32 H 0.157 0.843 33 H 0.203 0.797 34 H 0.090 0.910 35 H 0.072 0.928 36 H 0.118 0.882 37 H 0.411 0.589 38 H 0.087 0.913 39 H 0.079 0.921 40 H 0.156 0.844 41 H 0.132 0.868 42 H 0.140 0.860 43 H 0.041 0.959 44 H 0.042 0.958 45 H 0.251 0.749 46 H 0.025 0.975 47 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.172 14.919 20.180 26.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.137 4.137 3 C -0.244 4.244 4 C -0.117 4.117 5 N -0.102 5.102 6 C -0.079 4.079 7 C -0.191 4.191 8 C 0.385 3.615 9 O -0.446 6.446 10 N -0.352 5.352 11 C 0.051 3.949 12 C -0.110 4.110 13 C -0.104 4.104 14 C -0.129 4.129 15 C -0.111 4.111 16 C -0.118 4.118 17 C -0.094 4.094 18 C 0.046 3.954 19 N -0.351 5.351 20 C -0.373 4.373 21 H 0.108 0.892 22 C -0.257 4.257 23 N -0.601 5.601 24 Si 0.815 3.185 25 H -0.210 1.210 26 H -0.218 1.218 27 H -0.191 1.191 28 C 0.096 3.904 29 H 0.083 0.917 30 H 0.101 0.899 31 H 0.069 0.931 32 H 0.174 0.826 33 H 0.219 0.781 34 H 0.109 0.891 35 H 0.091 0.909 36 H 0.136 0.864 37 H 0.247 0.753 38 H 0.105 0.895 39 H 0.097 0.903 40 H 0.174 0.826 41 H 0.150 0.850 42 H 0.157 0.843 43 H 0.059 0.941 44 H 0.060 0.940 45 H 0.060 0.940 46 H 0.043 0.957 47 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges 7.243 14.152 20.706 26.105 hybrid contribution -0.165 -0.410 -1.745 1.800 sum 7.078 13.742 18.961 24.463 Atomic orbital electron populations 1.20218 0.89508 1.02496 1.01925 1.20113 0.96003 0.91665 1.05891 1.20988 0.92136 0.98912 1.12328 1.22502 1.00332 0.82280 1.06549 1.44075 1.04896 1.07033 1.54168 1.22382 0.85573 0.95317 1.04665 1.19976 0.85494 0.92820 1.20835 1.17234 0.77116 0.83954 0.83203 1.90822 1.50081 1.70658 1.33084 1.46126 1.62300 1.15542 1.11238 1.20137 1.00357 0.81882 0.92501 1.19596 0.94814 1.01464 0.95136 1.21152 0.97929 0.96410 0.94957 1.20692 0.97827 1.01085 0.93298 1.21204 0.95697 0.97643 0.96561 1.20564 0.96257 0.99597 0.95344 1.20510 0.99539 0.98928 0.90443 1.19810 0.94243 0.95880 0.85476 1.44260 1.16644 1.64336 1.09862 1.19406 1.00749 1.30152 0.87007 0.89197 1.25765 0.97264 1.00169 1.02548 1.70152 1.13433 1.42064 1.34409 0.84946 0.78072 0.76867 0.78628 1.20956 1.21850 1.19110 1.19281 0.87653 0.96204 0.87270 0.91739 0.89937 0.93147 0.82567 0.78053 0.89116 0.90869 0.86392 0.75264 0.89459 0.90310 0.82602 0.85003 0.84263 0.94128 0.94008 0.93998 0.95707 0.95814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.60 10.20 71.24 0.73 -0.87 16 2 C -0.13 -2.72 6.21 -19.56 -0.12 -2.84 16 3 C -0.22 -3.69 10.76 22.01 0.24 -3.45 16 4 C 0.02 0.23 11.37 83.48 0.95 1.18 16 5 N -0.43 -6.86 3.16 -534.32 -1.69 -8.55 16 6 C 0.06 0.57 10.89 127.77 1.39 1.96 16 7 C -0.08 -1.70 6.63 40.35 0.27 -1.44 16 8 C 0.60 14.25 6.75 86.45 0.58 14.84 16 9 O -0.57 -17.60 17.12 -4.34 -0.07 -17.68 16 10 N -0.70 -13.58 5.54 -470.82 -2.61 -16.19 16 11 C 0.17 3.40 5.81 85.63 0.50 3.90 16 12 C -0.11 -2.51 5.25 -19.88 -0.10 -2.61 16 13 C -0.09 -2.00 9.70 22.25 0.22 -1.78 16 14 C -0.11 -3.40 10.05 22.30 0.22 -3.17 16 15 C -0.11 -4.38 6.22 -19.83 -0.12 -4.51 16 16 C -0.12 -4.31 6.22 -19.83 -0.12 -4.43 16 17 C -0.08 -2.08 9.70 22.30 0.22 -1.87 16 18 C 0.17 7.35 7.25 85.63 0.62 7.97 16 19 N -0.62 -33.43 3.41 -709.70 -2.42 -35.84 16 20 C -0.25 -13.91 10.32 84.04 0.87 -13.04 16 21 H 0.09 4.81 7.83 -2.91 -0.02 4.79 16 22 C -0.06 -3.66 5.49 84.86 0.47 -3.20 16 23 N -0.95 -57.28 10.44 21.65 0.23 -57.06 16 24 Si 0.99 45.41 29.55 68.60 2.03 47.43 16 25 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 26 H -0.29 -13.45 7.11 99.48 0.71 -12.75 16 27 H -0.27 -11.55 7.11 99.48 0.71 -10.85 16 28 C 0.22 11.37 5.39 85.63 0.46 11.83 16 29 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 30 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 31 H 0.05 1.01 7.96 -2.39 -0.02 0.99 16 32 H 0.16 1.98 8.06 -2.91 -0.02 1.95 16 33 H 0.20 1.12 8.06 -2.91 -0.02 1.09 16 34 H 0.09 0.65 8.14 -2.39 -0.02 0.64 16 35 H 0.07 0.84 7.95 -2.39 -0.02 0.83 16 36 H 0.12 0.44 8.12 -2.39 -0.02 0.42 16 37 H 0.41 7.17 8.45 -92.70 -0.78 6.38 16 38 H 0.09 1.61 8.09 -2.39 -0.02 1.59 16 39 H 0.08 1.59 8.08 -2.39 -0.02 1.57 16 40 H 0.16 2.53 8.06 -2.91 -0.02 2.50 16 41 H 0.13 3.69 8.06 -2.91 -0.02 3.67 16 42 H 0.14 3.24 8.06 -2.91 -0.02 3.21 16 43 H 0.04 1.70 8.14 -2.38 -0.02 1.68 16 44 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 45 H 0.25 14.55 8.31 -92.71 -0.77 13.78 16 46 H 0.03 1.43 7.49 -2.39 -0.02 1.41 16 47 H 0.02 1.37 7.49 -2.39 -0.02 1.35 16 Total: -1.00 -75.90 395.51 2.91 -72.99 By element: Atomic # 1 Polarization: 16.22 SS G_CDS: 0.20 Total: 16.42 kcal Atomic # 6 Polarization: -8.78 SS G_CDS: 7.25 Total: -1.53 kcal Atomic # 7 Polarization: -111.15 SS G_CDS: -6.49 Total: -117.64 kcal Atomic # 8 Polarization: -17.60 SS G_CDS: -0.07 Total: -17.68 kcal Atomic # 14 Polarization: 45.41 SS G_CDS: 2.03 Total: 47.43 kcal Total: -75.90 2.91 -72.99 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054262503.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.857 kcal (2) G-P(sol) polarization free energy of solvation -75.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.987 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds